Wall clock time and date at job start Mon Mar 30 2020 01:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47592 * 239.99805 * 2 1 3 5 5 C 1.52997 * 109.47592 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47165 * 60.00300 * 5 4 2 7 7 C 1.50697 * 109.47240 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00304 * 120.00020 * 7 6 5 9 9 N 1.34776 * 119.99862 * 299.99251 * 7 6 5 10 10 C 1.46505 * 120.00167 * 180.02562 * 9 7 6 11 11 C 1.52993 * 109.47021 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.47021 * 179.97438 * 11 10 9 13 13 C 1.36936 * 120.00076 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99880 * 359.97438 * 13 12 11 15 15 C 1.38817 * 119.99910 * 180.02562 * 13 12 11 16 16 N 1.31618 * 119.99567 * 179.97438 * 15 13 12 17 17 Si 1.86793 * 119.99974 * 359.97438 * 15 13 12 18 18 H 1.48506 * 109.46881 * 90.00451 * 17 15 13 19 19 H 1.48501 * 109.47362 * 210.00280 * 17 15 13 20 20 H 1.48500 * 109.47519 * 330.00612 * 17 15 13 21 21 C 1.53002 * 109.46972 * 300.00293 * 6 5 4 22 22 C 1.52997 * 109.47415 * 59.99860 * 21 6 5 23 23 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 24 24 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 25 25 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 28 28 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 29 29 H 1.09000 * 109.47160 * 300.00333 * 4 2 1 30 30 H 1.09002 * 109.46719 * 60.00054 * 4 2 1 31 31 H 1.09000 * 109.47140 * 300.00346 * 5 4 2 32 32 H 1.09001 * 109.47375 * 180.02562 * 5 4 2 33 33 H 1.08996 * 109.47134 * 59.99508 * 6 5 4 34 34 H 0.97000 * 120.00221 * 0.02562 * 9 7 6 35 35 H 1.09004 * 109.46876 * 300.00152 * 10 9 7 36 36 H 1.08992 * 109.46802 * 60.00049 * 10 9 7 37 37 H 1.09000 * 109.47250 * 300.00014 * 11 10 9 38 38 H 1.09002 * 109.47722 * 60.00088 * 11 10 9 39 39 H 0.96994 * 119.99585 * 359.97438 * 12 11 10 40 40 H 0.97001 * 119.99377 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.46986 * 299.99742 * 21 6 5 42 42 H 1.09001 * 109.47601 * 180.02562 * 21 6 5 43 43 H 1.09001 * 109.46922 * 180.02562 * 22 21 6 44 44 H 1.09000 * 109.47140 * 59.99976 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7207 -1.2495 6 6 4.0806 -1.4416 -0.0003 7 6 5.5875 -1.4405 -0.0003 8 8 6.1936 -0.9149 0.9093 9 7 6.2618 -2.0237 -1.0110 10 6 7.7269 -2.0232 -1.0108 11 6 8.2373 -2.7435 -2.2603 12 7 9.7023 -2.7425 -2.2604 13 6 10.3874 -3.3340 -3.2879 14 1 9.8477 -3.8018 -4.0981 15 6 11.7756 -3.3335 -3.2877 16 7 12.4340 -3.9025 -4.2751 17 14 12.7090 -2.5251 -1.8861 18 1 12.9568 -3.5240 -0.8154 19 1 14.0064 -2.0067 -2.3893 20 1 11.9059 -1.4022 -1.3391 21 6 3.5705 -0.7204 1.2490 22 6 2.0405 -0.7209 1.2493 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2492 30 1 1.6768 -0.2074 -2.1392 31 1 3.9330 0.3071 -1.2497 32 1 3.9334 -1.2342 -2.1397 33 1 3.7176 -2.4693 0.0000 34 1 5.7772 -2.4439 -1.7387 35 1 8.0898 -0.9954 -1.0106 36 1 8.0902 -2.5370 -0.1209 37 1 7.8743 -3.7713 -2.2610 38 1 7.8740 -2.2294 -3.1501 39 1 10.1870 -2.3221 -1.5330 40 1 13.4040 -3.9018 -4.2751 41 1 3.9335 0.3074 1.2488 42 1 3.9345 -1.2336 2.1390 43 1 1.6772 -0.2067 2.1391 44 1 1.6776 -1.7487 1.2495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152843774.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:55 Heat of formation + Delta-G solvation = -57.753613 kcal Electronic energy + Delta-G solvation = -20689.564163 eV Core-core repulsion = 17640.763283 eV Total energy + Delta-G solvation = -3048.800881 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.54161 -38.73622 -35.86299 -34.00849 -33.50194 -31.45050 -31.02250 -28.52230 -27.62991 -26.80870 -23.59984 -22.95689 -22.03852 -21.47980 -19.99812 -18.71638 -17.84157 -16.98439 -15.95202 -15.60267 -15.14575 -15.12496 -14.48589 -14.33832 -14.09608 -13.94480 -13.73314 -13.43947 -12.92967 -12.70915 -12.64068 -12.50969 -12.20874 -12.00292 -11.72198 -11.57538 -11.50781 -11.26850 -11.22053 -10.94213 -10.85606 -10.70052 -10.46101 -10.23340 -10.16908 -9.67416 -9.59726 -9.02463 -8.87694 -7.31409 -5.81129 -3.18452 2.69622 3.22750 3.37771 3.41562 3.45438 4.28736 4.34636 4.40976 4.56715 4.71819 4.77599 4.88373 5.05018 5.09939 5.19776 5.24390 5.31371 5.34904 5.37794 5.44012 5.50370 5.53198 5.60125 5.62499 5.64675 5.65999 5.75749 5.77669 5.82659 5.91585 5.96673 6.00377 6.03681 6.14252 6.29021 6.40939 6.58368 6.63858 7.57898 7.92418 8.29574 8.37103 9.14749 9.87117 10.05580 11.36752 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.044163 B = 0.003061 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.856694 B = 9144.171962 C = 9451.289370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.068 4.068 3 C -0.147 4.147 4 C -0.106 4.106 5 C -0.114 4.114 6 C -0.104 4.104 7 C 0.513 3.487 8 O -0.543 6.543 9 N -0.723 5.723 10 C 0.107 3.893 11 C 0.149 3.851 12 N -0.753 5.753 13 C -0.249 4.249 14 H 0.091 0.909 15 C 0.007 3.993 16 N -0.932 5.932 17 Si 0.885 3.115 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.276 1.276 21 C -0.101 4.101 22 C -0.108 4.108 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.400 0.600 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.033 0.967 38 H 0.032 0.968 39 H 0.363 0.637 40 H 0.261 0.739 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.125 7.477 8.883 28.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.068 4.068 3 C -0.204 4.204 4 C -0.143 4.143 5 C -0.152 4.152 6 C -0.126 4.126 7 C 0.299 3.701 8 O -0.421 6.421 9 N -0.375 5.375 10 C -0.017 4.017 11 C 0.021 3.979 12 N -0.399 5.399 13 C -0.378 4.378 14 H 0.109 0.891 15 C -0.190 4.190 16 N -0.579 5.579 17 Si 0.715 3.285 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.202 1.202 21 C -0.139 4.139 22 C -0.145 4.145 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.234 0.766 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.196 0.804 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -25.609 7.730 9.317 28.327 hybrid contribution 0.649 0.254 0.499 0.857 sum -24.960 7.984 9.816 27.984 Atomic orbital electron populations 1.21862 0.94672 1.01651 1.01656 1.20567 0.95107 0.95727 0.95351 1.21994 1.01797 0.95147 1.01474 1.21585 0.94713 1.00654 0.97390 1.21590 0.96111 1.01374 0.96087 1.21341 0.91368 1.01990 0.97863 1.20672 0.89942 0.77805 0.81661 1.90694 1.70488 1.44958 1.35914 1.45943 1.07717 1.58540 1.25267 1.21584 0.78718 1.01526 0.99893 1.20728 0.85803 0.97461 0.93906 1.42540 1.00335 1.69865 1.27175 1.19011 0.89556 1.29076 1.00190 0.89098 1.24676 0.96125 1.00365 0.97787 1.69702 1.07122 1.48860 1.32244 0.86538 0.79764 0.79576 0.82632 1.20911 1.21578 1.20176 1.21383 0.94649 1.01543 0.96309 1.21622 0.95281 1.00399 0.97229 0.92743 0.92726 0.92718 0.91810 0.92837 0.92833 0.91682 0.91586 0.90966 0.91284 0.88647 0.76555 0.91472 0.91457 0.94941 0.94993 0.80393 0.92934 0.90852 0.91314 0.91729 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 8.48 37.16 0.31 -0.52 16 2 C -0.07 -0.46 0.77 -154.51 -0.12 -0.58 16 3 C -0.15 -1.07 7.78 37.16 0.29 -0.78 16 4 C -0.11 -0.71 4.73 -26.73 -0.13 -0.84 16 5 C -0.11 -0.91 4.82 -26.73 -0.13 -1.04 16 6 C -0.10 -0.99 2.53 -91.77 -0.23 -1.22 16 7 C 0.51 6.92 7.15 -10.99 -0.08 6.84 16 8 O -0.54 -9.58 15.98 5.56 0.09 -9.49 16 9 N -0.72 -9.36 5.45 -60.30 -0.33 -9.69 16 10 C 0.11 1.74 5.79 -4.04 -0.02 1.72 16 11 C 0.15 2.78 6.37 -4.04 -0.03 2.76 16 12 N -0.75 -18.03 5.41 -59.91 -0.32 -18.35 16 13 C -0.25 -7.06 10.47 -15.06 -0.16 -7.22 16 14 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 15 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 16 N -0.93 -29.28 13.97 55.49 0.78 -28.51 16 17 Si 0.88 22.31 27.74 -169.99 -4.71 17.59 16 18 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 20 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 21 C -0.10 -0.96 4.22 -26.73 -0.11 -1.08 16 22 C -0.11 -0.79 4.73 -26.73 -0.13 -0.92 16 23 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.53 4.81 -51.93 -0.25 0.28 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.65 6.43 -51.93 -0.33 0.32 16 32 H 0.07 0.50 7.57 -51.93 -0.39 0.11 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.40 4.07 7.89 -40.82 -0.32 3.75 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.36 8.57 5.53 -40.82 -0.23 8.35 16 40 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 41 H 0.07 0.79 6.38 -51.93 -0.33 0.46 16 42 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 339.67 15.07 5.12 5.12 Total: -1.00 -33.09 339.67 -7.79 -40.88 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -7.79 Total: 5.20 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -0.62 Total: -2.76 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 0.12 Total: -56.55 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.71 Total: 17.59 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.09 -7.79 -40.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152843774.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.874 kcal (2) G-P(sol) polarization free energy of solvation -33.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds