Wall clock time and date at job start Mon Mar 30 2020 01:33:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52997 * 109.47232 * 2 1
4 4 C 1.52999 * 109.47592 * 239.99805 * 2 1 3
5 5 C 1.52997 * 109.47592 * 179.97438 * 4 2 1
6 6 C 1.52996 * 109.47165 * 60.00300 * 5 4 2
7 7 C 1.50697 * 109.47240 * 180.02562 * 6 5 4
8 8 O 1.21277 * 120.00304 * 120.00020 * 7 6 5
9 9 N 1.34776 * 119.99862 * 299.99251 * 7 6 5
10 10 C 1.46505 * 120.00167 * 180.02562 * 9 7 6
11 11 C 1.52993 * 109.47021 * 180.02562 * 10 9 7
12 12 N 1.46505 * 109.47021 * 179.97438 * 11 10 9
13 13 C 1.36936 * 120.00076 * 180.02562 * 12 11 10
14 14 H 1.08005 * 119.99880 * 359.97438 * 13 12 11
15 15 C 1.38817 * 119.99910 * 180.02562 * 13 12 11
16 16 N 1.31618 * 119.99567 * 179.97438 * 15 13 12
17 17 Si 1.86793 * 119.99974 * 359.97438 * 15 13 12
18 18 H 1.48506 * 109.46881 * 90.00451 * 17 15 13
19 19 H 1.48501 * 109.47362 * 210.00280 * 17 15 13
20 20 H 1.48500 * 109.47519 * 330.00612 * 17 15 13
21 21 C 1.53002 * 109.46972 * 300.00293 * 6 5 4
22 22 C 1.52997 * 109.47415 * 59.99860 * 21 6 5
23 23 H 1.09001 * 109.47375 * 299.99867 * 1 2 3
24 24 H 1.09002 * 109.46777 * 60.00422 * 1 2 3
25 25 H 1.09000 * 109.47140 * 179.97438 * 1 2 3
26 26 H 1.09004 * 109.47261 * 179.97438 * 3 2 1
27 27 H 1.09002 * 109.47153 * 299.99992 * 3 2 1
28 28 H 1.09001 * 109.47289 * 60.00075 * 3 2 1
29 29 H 1.09000 * 109.47160 * 300.00333 * 4 2 1
30 30 H 1.09002 * 109.46719 * 60.00054 * 4 2 1
31 31 H 1.09000 * 109.47140 * 300.00346 * 5 4 2
32 32 H 1.09001 * 109.47375 * 180.02562 * 5 4 2
33 33 H 1.08996 * 109.47134 * 59.99508 * 6 5 4
34 34 H 0.97000 * 120.00221 * 0.02562 * 9 7 6
35 35 H 1.09004 * 109.46876 * 300.00152 * 10 9 7
36 36 H 1.08992 * 109.46802 * 60.00049 * 10 9 7
37 37 H 1.09000 * 109.47250 * 300.00014 * 11 10 9
38 38 H 1.09002 * 109.47722 * 60.00088 * 11 10 9
39 39 H 0.96994 * 119.99585 * 359.97438 * 12 11 10
40 40 H 0.97001 * 119.99377 * 179.97438 * 16 15 13
41 41 H 1.09000 * 109.46986 * 299.99742 * 21 6 5
42 42 H 1.09001 * 109.47601 * 180.02562 * 21 6 5
43 43 H 1.09001 * 109.46922 * 180.02562 * 22 21 6
44 44 H 1.09000 * 109.47140 * 59.99976 * 22 21 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0401 -0.7213 -1.2492
5 6 3.5701 -0.7207 -1.2495
6 6 4.0806 -1.4416 -0.0003
7 6 5.5875 -1.4405 -0.0003
8 8 6.1936 -0.9149 0.9093
9 7 6.2618 -2.0237 -1.0110
10 6 7.7269 -2.0232 -1.0108
11 6 8.2373 -2.7435 -2.2603
12 7 9.7023 -2.7425 -2.2604
13 6 10.3874 -3.3340 -3.2879
14 1 9.8477 -3.8018 -4.0981
15 6 11.7756 -3.3335 -3.2877
16 7 12.4340 -3.9025 -4.2751
17 14 12.7090 -2.5251 -1.8861
18 1 12.9568 -3.5240 -0.8154
19 1 14.0064 -2.0067 -2.3893
20 1 11.9059 -1.4022 -1.3391
21 6 3.5705 -0.7204 1.2490
22 6 2.0405 -0.7209 1.2493
23 1 -0.3634 0.5138 0.8900
24 1 -0.3633 0.5138 -0.8901
25 1 -0.3633 -1.0277 -0.0005
26 1 3.1300 1.4425 0.0005
27 1 1.6767 1.9563 -0.8900
28 1 1.6767 1.9563 0.8900
29 1 1.6767 -1.7489 -1.2492
30 1 1.6768 -0.2074 -2.1392
31 1 3.9330 0.3071 -1.2497
32 1 3.9334 -1.2342 -2.1397
33 1 3.7176 -2.4693 0.0000
34 1 5.7772 -2.4439 -1.7387
35 1 8.0898 -0.9954 -1.0106
36 1 8.0902 -2.5370 -0.1209
37 1 7.8743 -3.7713 -2.2610
38 1 7.8740 -2.2294 -3.1501
39 1 10.1870 -2.3221 -1.5330
40 1 13.4040 -3.9018 -4.2751
41 1 3.9335 0.3074 1.2488
42 1 3.9345 -1.2336 2.1390
43 1 1.6772 -0.2067 2.1391
44 1 1.6776 -1.7487 1.2495
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001152843774.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:33:55
Heat of formation + Delta-G solvation = -57.753613 kcal
Electronic energy + Delta-G solvation = -20689.564163 eV
Core-core repulsion = 17640.763283 eV
Total energy + Delta-G solvation = -3048.800881 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-40.54161 -38.73622 -35.86299 -34.00849 -33.50194 -31.45050 -31.02250 -28.52230
-27.62991 -26.80870 -23.59984 -22.95689 -22.03852 -21.47980 -19.99812 -18.71638
-17.84157 -16.98439 -15.95202 -15.60267 -15.14575 -15.12496 -14.48589 -14.33832
-14.09608 -13.94480 -13.73314 -13.43947 -12.92967 -12.70915 -12.64068 -12.50969
-12.20874 -12.00292 -11.72198 -11.57538 -11.50781 -11.26850 -11.22053 -10.94213
-10.85606 -10.70052 -10.46101 -10.23340 -10.16908 -9.67416 -9.59726 -9.02463
-8.87694 -7.31409 -5.81129 -3.18452 2.69622 3.22750 3.37771 3.41562
3.45438 4.28736 4.34636 4.40976 4.56715 4.71819 4.77599 4.88373
5.05018 5.09939 5.19776 5.24390 5.31371 5.34904 5.37794 5.44012
5.50370 5.53198 5.60125 5.62499 5.64675 5.65999 5.75749 5.77669
5.82659 5.91585 5.96673 6.00377 6.03681 6.14252 6.29021 6.40939
6.58368 6.63858 7.57898 7.92418 8.29574 8.37103 9.14749 9.87117
10.05580 11.36752
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.044163 B = 0.003061 C = 0.002962
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 633.856694 B = 9144.171962 C = 9451.289370
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.068 4.068
3 C -0.147 4.147
4 C -0.106 4.106
5 C -0.114 4.114
6 C -0.104 4.104
7 C 0.513 3.487
8 O -0.543 6.543
9 N -0.723 5.723
10 C 0.107 3.893
11 C 0.149 3.851
12 N -0.753 5.753
13 C -0.249 4.249
14 H 0.091 0.909
15 C 0.007 3.993
16 N -0.932 5.932
17 Si 0.885 3.115
18 H -0.283 1.283
19 H -0.289 1.289
20 H -0.276 1.276
21 C -0.101 4.101
22 C -0.108 4.108
23 H 0.053 0.947
24 H 0.054 0.946
25 H 0.054 0.946
26 H 0.063 0.937
27 H 0.053 0.947
28 H 0.053 0.947
29 H 0.064 0.936
30 H 0.065 0.935
31 H 0.072 0.928
32 H 0.068 0.932
33 H 0.095 0.905
34 H 0.400 0.600
35 H 0.067 0.933
36 H 0.067 0.933
37 H 0.033 0.967
38 H 0.032 0.968
39 H 0.363 0.637
40 H 0.261 0.739
41 H 0.073 0.927
42 H 0.068 0.932
43 H 0.064 0.936
44 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.125 7.477 8.883 28.589
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.068 4.068
3 C -0.204 4.204
4 C -0.143 4.143
5 C -0.152 4.152
6 C -0.126 4.126
7 C 0.299 3.701
8 O -0.421 6.421
9 N -0.375 5.375
10 C -0.017 4.017
11 C 0.021 3.979
12 N -0.399 5.399
13 C -0.378 4.378
14 H 0.109 0.891
15 C -0.190 4.190
16 N -0.579 5.579
17 Si 0.715 3.285
18 H -0.209 1.209
19 H -0.216 1.216
20 H -0.202 1.202
21 C -0.139 4.139
22 C -0.145 4.145
23 H 0.073 0.927
24 H 0.073 0.927
25 H 0.073 0.927
26 H 0.082 0.918
27 H 0.072 0.928
28 H 0.072 0.928
29 H 0.083 0.917
30 H 0.084 0.916
31 H 0.090 0.910
32 H 0.087 0.913
33 H 0.114 0.886
34 H 0.234 0.766
35 H 0.085 0.915
36 H 0.085 0.915
37 H 0.051 0.949
38 H 0.050 0.950
39 H 0.196 0.804
40 H 0.071 0.929
41 H 0.091 0.909
42 H 0.087 0.913
43 H 0.083 0.917
44 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -25.609 7.730 9.317 28.327
hybrid contribution 0.649 0.254 0.499 0.857
sum -24.960 7.984 9.816 27.984
Atomic orbital electron populations
1.21862 0.94672 1.01651 1.01656 1.20567 0.95107 0.95727 0.95351
1.21994 1.01797 0.95147 1.01474 1.21585 0.94713 1.00654 0.97390
1.21590 0.96111 1.01374 0.96087 1.21341 0.91368 1.01990 0.97863
1.20672 0.89942 0.77805 0.81661 1.90694 1.70488 1.44958 1.35914
1.45943 1.07717 1.58540 1.25267 1.21584 0.78718 1.01526 0.99893
1.20728 0.85803 0.97461 0.93906 1.42540 1.00335 1.69865 1.27175
1.19011 0.89556 1.29076 1.00190 0.89098 1.24676 0.96125 1.00365
0.97787 1.69702 1.07122 1.48860 1.32244 0.86538 0.79764 0.79576
0.82632 1.20911 1.21578 1.20176 1.21383 0.94649 1.01543 0.96309
1.21622 0.95281 1.00399 0.97229 0.92743 0.92726 0.92718 0.91810
0.92837 0.92833 0.91682 0.91586 0.90966 0.91284 0.88647 0.76555
0.91472 0.91457 0.94941 0.94993 0.80393 0.92934 0.90852 0.91314
0.91729 0.91919
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.83 8.48 37.16 0.31 -0.52 16
2 C -0.07 -0.46 0.77 -154.51 -0.12 -0.58 16
3 C -0.15 -1.07 7.78 37.16 0.29 -0.78 16
4 C -0.11 -0.71 4.73 -26.73 -0.13 -0.84 16
5 C -0.11 -0.91 4.82 -26.73 -0.13 -1.04 16
6 C -0.10 -0.99 2.53 -91.77 -0.23 -1.22 16
7 C 0.51 6.92 7.15 -10.99 -0.08 6.84 16
8 O -0.54 -9.58 15.98 5.56 0.09 -9.49 16
9 N -0.72 -9.36 5.45 -60.30 -0.33 -9.69 16
10 C 0.11 1.74 5.79 -4.04 -0.02 1.72 16
11 C 0.15 2.78 6.37 -4.04 -0.03 2.76 16
12 N -0.75 -18.03 5.41 -59.91 -0.32 -18.35 16
13 C -0.25 -7.06 10.47 -15.06 -0.16 -7.22 16
14 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16
15 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16
16 N -0.93 -29.28 13.97 55.49 0.78 -28.51 16
17 Si 0.88 22.31 27.74 -169.99 -4.71 17.59 16
18 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16
19 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16
20 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16
21 C -0.10 -0.96 4.22 -26.73 -0.11 -1.08 16
22 C -0.11 -0.79 4.73 -26.73 -0.13 -0.92 16
23 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16
24 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16
25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16
26 H 0.06 0.53 4.81 -51.93 -0.25 0.28 16
27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16
28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16
29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
31 H 0.07 0.65 6.43 -51.93 -0.33 0.32 16
32 H 0.07 0.50 7.57 -51.93 -0.39 0.11 16
33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16
34 H 0.40 4.07 7.89 -40.82 -0.32 3.75 16
35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16
36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16
37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16
38 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16
39 H 0.36 8.57 5.53 -40.82 -0.23 8.35 16
40 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16
41 H 0.07 0.79 6.38 -51.93 -0.33 0.46 16
42 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16
43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
LS Contribution 339.67 15.07 5.12 5.12
Total: -1.00 -33.09 339.67 -7.79 -40.88
By element:
Atomic # 1 Polarization: 12.99 SS G_CDS: -7.79 Total: 5.20 kcal
Atomic # 6 Polarization: -2.14 SS G_CDS: -0.62 Total: -2.76 kcal
Atomic # 7 Polarization: -56.67 SS G_CDS: 0.12 Total: -56.55 kcal
Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal
Atomic # 14 Polarization: 22.31 SS G_CDS: -4.71 Total: 17.59 kcal
Total LS contribution 5.12 Total: 5.12 kcal
Total: -33.09 -7.79 -40.88 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001152843774.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -16.874 kcal
(2) G-P(sol) polarization free energy of solvation -33.087 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.961 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.880 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.754 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds