Wall clock time and date at job start Mon Mar 30 2020 01:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47592 * 239.99805 * 2 1 3 5 5 C 1.52997 * 109.47592 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47165 * 60.00300 * 5 4 2 7 7 C 1.50697 * 109.47240 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00304 * 120.00020 * 7 6 5 9 9 N 1.34776 * 119.99862 * 299.99251 * 7 6 5 10 10 C 1.46505 * 120.00167 * 180.02562 * 9 7 6 11 11 C 1.52993 * 109.47021 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.47021 * 179.97438 * 11 10 9 13 13 C 1.36936 * 120.00076 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99880 * 359.97438 * 13 12 11 15 15 C 1.38817 * 119.99910 * 180.02562 * 13 12 11 16 16 N 1.31618 * 119.99567 * 179.97438 * 15 13 12 17 17 Si 1.86793 * 119.99974 * 359.97438 * 15 13 12 18 18 H 1.48506 * 109.46881 * 90.00451 * 17 15 13 19 19 H 1.48501 * 109.47362 * 210.00280 * 17 15 13 20 20 H 1.48500 * 109.47519 * 330.00612 * 17 15 13 21 21 C 1.53002 * 109.46972 * 300.00293 * 6 5 4 22 22 C 1.52997 * 109.47415 * 59.99860 * 21 6 5 23 23 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 24 24 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 25 25 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 28 28 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 29 29 H 1.09000 * 109.47160 * 300.00333 * 4 2 1 30 30 H 1.09002 * 109.46719 * 60.00054 * 4 2 1 31 31 H 1.09000 * 109.47140 * 300.00346 * 5 4 2 32 32 H 1.09001 * 109.47375 * 180.02562 * 5 4 2 33 33 H 1.08996 * 109.47134 * 59.99508 * 6 5 4 34 34 H 0.97000 * 120.00221 * 0.02562 * 9 7 6 35 35 H 1.09004 * 109.46876 * 300.00152 * 10 9 7 36 36 H 1.08992 * 109.46802 * 60.00049 * 10 9 7 37 37 H 1.09000 * 109.47250 * 300.00014 * 11 10 9 38 38 H 1.09002 * 109.47722 * 60.00088 * 11 10 9 39 39 H 0.96994 * 119.99585 * 359.97438 * 12 11 10 40 40 H 0.97001 * 119.99377 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.46986 * 299.99742 * 21 6 5 42 42 H 1.09001 * 109.47601 * 180.02562 * 21 6 5 43 43 H 1.09001 * 109.46922 * 180.02562 * 22 21 6 44 44 H 1.09000 * 109.47140 * 59.99976 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7207 -1.2495 6 6 4.0806 -1.4416 -0.0003 7 6 5.5875 -1.4405 -0.0003 8 8 6.1936 -0.9149 0.9093 9 7 6.2618 -2.0237 -1.0110 10 6 7.7269 -2.0232 -1.0108 11 6 8.2373 -2.7435 -2.2603 12 7 9.7023 -2.7425 -2.2604 13 6 10.3874 -3.3340 -3.2879 14 1 9.8477 -3.8018 -4.0981 15 6 11.7756 -3.3335 -3.2877 16 7 12.4340 -3.9025 -4.2751 17 14 12.7090 -2.5251 -1.8861 18 1 12.9568 -3.5240 -0.8154 19 1 14.0064 -2.0067 -2.3893 20 1 11.9059 -1.4022 -1.3391 21 6 3.5705 -0.7204 1.2490 22 6 2.0405 -0.7209 1.2493 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2492 30 1 1.6768 -0.2074 -2.1392 31 1 3.9330 0.3071 -1.2497 32 1 3.9334 -1.2342 -2.1397 33 1 3.7176 -2.4693 0.0000 34 1 5.7772 -2.4439 -1.7387 35 1 8.0898 -0.9954 -1.0106 36 1 8.0902 -2.5370 -0.1209 37 1 7.8743 -3.7713 -2.2610 38 1 7.8740 -2.2294 -3.1501 39 1 10.1870 -2.3221 -1.5330 40 1 13.4040 -3.9018 -4.2751 41 1 3.9335 0.3074 1.2488 42 1 3.9345 -1.2336 2.1390 43 1 1.6772 -0.2067 2.1391 44 1 1.6776 -1.7487 1.2495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152843774.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:54 Heat of formation + Delta-G solvation = -79.959145 kcal Electronic energy + Delta-G solvation = -20690.527067 eV Core-core repulsion = 17640.763283 eV Total energy + Delta-G solvation = -3049.763785 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.42851 -39.60734 -37.46186 -35.55415 -34.33479 -33.38887 -31.71360 -29.99321 -28.15942 -27.67862 -25.29146 -23.59369 -23.28304 -22.84308 -21.01899 -19.85243 -19.30199 -18.10679 -17.16379 -16.70538 -16.42399 -16.01860 -15.69802 -15.68244 -15.30791 -15.03564 -14.82270 -14.65372 -14.14046 -13.78288 -13.47056 -13.38194 -13.16835 -13.14244 -12.77820 -12.71851 -12.63815 -12.53132 -12.29022 -12.09950 -11.86402 -11.85271 -11.83577 -11.37972 -11.07807 -11.04818 -10.83669 -10.67705 -10.14102 -9.37927 -8.06553 -5.41874 1.38135 1.39712 1.46986 1.62340 2.11867 2.45526 3.25230 3.55293 3.67843 3.77600 3.79903 3.94785 4.09071 4.12685 4.19034 4.22666 4.42383 4.47444 4.53264 4.57940 4.62176 4.73193 4.87844 4.93793 4.98020 5.00459 5.07776 5.08898 5.12239 5.16977 5.18081 5.24646 5.29872 5.37153 5.38903 5.52575 5.56100 5.67834 5.71140 6.16570 6.54320 7.01797 7.23890 7.76399 7.94009 9.14256 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.044163 B = 0.003061 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.856694 B = 9144.171962 C = 9451.289370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.067 4.067 3 C -0.147 4.147 4 C -0.102 4.102 5 C -0.111 4.111 6 C -0.094 4.094 7 C 0.511 3.489 8 O -0.588 6.588 9 N -0.712 5.712 10 C 0.122 3.878 11 C 0.151 3.849 12 N -0.760 5.760 13 C -0.238 4.238 14 H 0.064 0.936 15 C -0.060 4.060 16 N -0.980 5.980 17 Si 0.952 3.048 18 H -0.277 1.277 19 H -0.293 1.293 20 H -0.255 1.255 21 C -0.100 4.100 22 C -0.102 4.102 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.119 0.881 34 H 0.416 0.584 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.042 0.958 38 H 0.041 0.959 39 H 0.366 0.634 40 H 0.260 0.740 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.066 0.934 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.220 7.749 9.592 30.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.067 4.067 3 C -0.204 4.204 4 C -0.140 4.140 5 C -0.149 4.149 6 C -0.115 4.115 7 C 0.299 3.701 8 O -0.468 6.468 9 N -0.365 5.365 10 C -0.003 4.003 11 C 0.024 3.976 12 N -0.406 5.406 13 C -0.369 4.369 14 H 0.082 0.918 15 C -0.252 4.252 16 N -0.630 5.630 17 Si 0.780 3.220 18 H -0.203 1.203 19 H -0.220 1.220 20 H -0.180 1.180 21 C -0.138 4.138 22 C -0.139 4.139 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.137 0.863 34 H 0.253 0.747 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.199 0.801 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -27.778 8.003 10.023 30.597 hybrid contribution 1.216 0.156 0.241 1.249 sum -26.562 8.159 10.264 29.623 Atomic orbital electron populations 1.21829 0.93620 1.02195 1.01912 1.20574 0.95874 0.95112 0.95135 1.21989 1.00803 0.95892 1.01731 1.21582 0.93356 1.01505 0.97535 1.21597 0.97274 1.00497 0.95547 1.21365 0.88050 1.03526 0.98606 1.21428 0.91553 0.76489 0.80638 1.90677 1.71695 1.46842 1.37631 1.45800 1.06322 1.58480 1.25889 1.21207 0.80703 1.00301 0.98136 1.20830 0.83001 0.98354 0.95376 1.42571 1.02463 1.69463 1.26096 1.19013 0.89797 1.27862 1.00187 0.91790 1.25485 0.97278 1.01779 1.00640 1.69867 1.07308 1.51088 1.34695 0.85450 0.78119 0.79152 0.79329 1.20343 1.21954 1.17984 1.21350 0.96349 1.00261 0.95795 1.21590 0.93317 1.01272 0.97766 0.92684 0.92356 0.92013 0.93326 0.92370 0.92822 0.90396 0.90844 0.92294 0.90147 0.86336 0.74654 0.92518 0.92325 0.94007 0.94120 0.80092 0.93156 0.92646 0.92775 0.91515 0.90733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.48 71.98 0.61 -0.65 16 2 C -0.07 -0.76 0.77 -52.18 -0.04 -0.80 16 3 C -0.15 -1.96 7.78 71.98 0.56 -1.40 16 4 C -0.10 -1.07 4.73 30.59 0.14 -0.93 16 5 C -0.11 -1.53 4.82 30.59 0.15 -1.38 16 6 C -0.09 -1.61 2.53 -11.54 -0.03 -1.64 16 7 C 0.51 13.18 7.15 87.66 0.63 13.81 16 8 O -0.59 -20.69 15.98 -3.02 -0.05 -20.74 16 9 N -0.71 -17.16 5.45 -463.08 -2.52 -19.68 16 10 C 0.12 3.79 5.79 86.38 0.50 4.29 16 11 C 0.15 5.41 6.37 86.38 0.55 5.96 16 12 N -0.76 -35.49 5.41 -343.44 -1.86 -37.34 16 13 C -0.24 -13.50 10.47 84.03 0.88 -12.62 16 14 H 0.06 3.91 8.06 -2.91 -0.02 3.89 16 15 C -0.06 -3.53 5.50 84.86 0.47 -3.06 16 16 N -0.98 -62.56 13.97 21.65 0.30 -62.25 16 17 Si 0.95 45.90 27.74 68.60 1.90 47.80 16 18 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 19 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 20 H -0.26 -11.29 6.52 99.48 0.65 -10.64 16 21 C -0.10 -1.81 4.22 30.59 0.13 -1.68 16 22 C -0.10 -1.29 4.73 30.60 0.14 -1.15 16 23 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 24 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.05 0.80 4.81 -2.38 -0.01 0.79 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.99 6.43 -2.39 -0.02 0.97 16 32 H 0.08 0.93 7.57 -2.39 -0.02 0.91 16 33 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.42 7.36 7.89 -92.71 -0.73 6.63 16 35 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.37 16.63 5.53 -92.71 -0.51 16.12 16 40 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 41 H 0.05 1.20 6.38 -2.39 -0.02 1.19 16 42 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 43 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -71.62 339.67 2.14 -69.48 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -0.33 Total: 23.99 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 4.69 Total: -1.25 kcal Atomic # 7 Polarization: -115.20 SS G_CDS: -4.08 Total: -119.28 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.05 Total: -20.74 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.90 Total: 47.80 kcal Total: -71.62 2.14 -69.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152843774.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.483 kcal (2) G-P(sol) polarization free energy of solvation -71.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds