Wall clock time and date at job start Mon Mar 30 2020 01:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46965 * 2 1 4 4 C 1.53005 * 109.46733 * 240.00506 * 2 1 3 5 5 C 1.52999 * 109.47159 * 299.99162 * 4 2 1 6 6 C 1.52997 * 109.47317 * 300.00546 * 5 4 2 7 7 C 1.53000 * 109.47060 * 59.99960 * 6 5 4 8 8 C 1.52997 * 109.47457 * 120.00135 * 2 1 3 9 9 H 1.09002 * 109.46695 * 179.97438 * 8 2 1 10 10 C 1.50693 * 109.46989 * 299.99936 * 8 2 1 11 11 O 1.21279 * 120.00474 * 0.02562 * 10 8 2 12 12 N 1.34780 * 119.99572 * 179.97438 * 10 8 2 13 13 C 1.46505 * 119.99795 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.46958 * 180.02562 * 13 12 10 15 15 N 1.46505 * 109.46958 * 179.97438 * 14 13 12 16 16 C 1.36939 * 119.99776 * 180.02562 * 15 14 13 17 17 H 1.07993 * 120.00126 * 359.97438 * 16 15 14 18 18 C 1.38817 * 119.99653 * 180.02562 * 16 15 14 19 19 N 1.31620 * 119.99966 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99527 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47030 * 89.99810 * 20 18 16 22 22 H 1.48503 * 109.46658 * 209.99521 * 20 18 16 23 23 H 1.48490 * 109.47315 * 329.99517 * 20 18 16 24 24 H 1.09004 * 109.46976 * 299.99579 * 1 2 3 25 25 H 1.09000 * 109.47380 * 59.99705 * 1 2 3 26 26 H 1.09001 * 109.46989 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47067 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47312 * 300.00337 * 3 2 1 29 29 H 1.09004 * 109.46930 * 60.00393 * 3 2 1 30 30 H 1.09000 * 109.47360 * 59.99776 * 4 2 1 31 31 H 1.09002 * 109.46935 * 179.97438 * 4 2 1 32 32 H 1.08996 * 109.46929 * 179.97438 * 5 4 2 33 33 H 1.09002 * 109.46716 * 60.00455 * 5 4 2 34 34 H 1.09002 * 109.47153 * 299.99641 * 6 5 4 35 35 H 1.09001 * 109.46832 * 179.97438 * 6 5 4 36 36 H 1.08992 * 109.47399 * 59.99823 * 7 6 5 37 37 H 1.09004 * 109.46724 * 180.02562 * 7 6 5 38 38 H 0.96996 * 120.00598 * 0.02562 * 12 10 8 39 39 H 1.09001 * 109.47372 * 300.00184 * 13 12 10 40 40 H 1.09002 * 109.47068 * 60.00271 * 13 12 10 41 41 H 1.08998 * 109.47387 * 300.00672 * 14 13 12 42 42 H 1.09002 * 109.46838 * 60.00668 * 14 13 12 43 43 H 0.97004 * 119.99657 * 0.02562 * 15 14 13 44 44 H 0.96993 * 119.99705 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.5300 -2.1637 -1.2494 6 6 2.0401 -2.8850 -0.0002 7 6 1.5301 -2.1638 1.2491 8 6 2.0400 -0.7213 1.2492 9 1 3.1301 -0.7216 1.2488 10 6 1.5378 -0.0109 2.4796 11 8 0.8401 0.9749 2.3685 12 7 1.8631 -0.4717 3.7037 13 6 1.3743 0.2185 4.8999 14 6 1.8845 -0.5027 6.1491 15 7 1.3963 0.1879 7.3454 16 6 1.7278 -0.2797 8.5891 17 1 2.3487 -1.1577 8.6881 18 6 1.2647 0.3744 9.7225 19 7 0.5075 1.4442 9.6018 20 14 1.7163 -0.2638 11.4190 21 1 2.9787 0.3759 11.8687 22 1 0.6283 0.0616 12.3760 23 1 1.9006 -1.7361 11.3611 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8901 30 1 1.6765 -0.2073 -2.1393 31 1 3.1299 -0.7208 -1.2496 32 1 1.8929 -2.6773 -2.1396 33 1 0.4400 -2.1637 -1.2493 34 1 3.1301 -2.8849 -0.0003 35 1 1.6764 -3.9125 0.0000 36 1 0.4402 -2.1638 1.2491 37 1 1.8939 -2.6774 2.1390 38 1 2.4207 -1.2603 3.7927 39 1 1.7375 1.2462 4.9004 40 1 0.2843 0.2184 4.8996 41 1 1.5218 -1.5306 6.1489 42 1 2.9746 -0.5021 6.1492 43 1 0.8382 0.9763 7.2564 44 1 0.1842 1.9014 10.3938 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152910400.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:20 Heat of formation + Delta-G solvation = -52.044772 kcal Electronic energy + Delta-G solvation = -21116.848939 eV Core-core repulsion = 18068.295612 eV Total energy + Delta-G solvation = -3048.553327 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.84045 -38.15939 -35.69839 -34.04558 -33.05200 -31.72617 -30.83596 -27.91541 -27.27644 -26.46332 -23.96847 -23.16850 -21.58391 -21.24163 -20.32330 -18.59967 -17.29645 -16.89179 -15.75164 -15.48848 -14.98701 -14.80091 -14.55702 -14.48645 -14.05995 -13.95738 -13.27579 -13.16908 -13.11445 -12.98400 -12.53522 -12.01835 -11.90484 -11.61238 -11.57390 -11.28534 -11.19858 -11.10764 -10.97386 -10.80719 -10.80199 -10.72453 -10.31584 -10.20609 -10.11125 -9.79483 -9.21732 -8.96270 -8.75899 -6.99661 -5.79940 -3.10627 2.77139 3.32183 3.42048 3.47319 3.49034 4.36322 4.46367 4.51362 4.59331 4.89019 4.94824 5.04629 5.13431 5.16080 5.22500 5.30994 5.45565 5.50058 5.55467 5.60026 5.72333 5.74428 5.78542 5.82777 5.84053 5.88128 5.91779 5.96969 6.01939 6.04029 6.15144 6.16844 6.24613 6.42690 6.51692 6.63419 6.71159 6.81433 7.65421 7.68223 8.37375 8.41972 9.48981 10.03943 10.38710 11.42693 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.040405 B = 0.003238 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.824910 B = 8645.737955 C = 9056.119426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.039 4.039 3 C -0.155 4.155 4 C -0.109 4.109 5 C -0.124 4.124 6 C -0.116 4.116 7 C -0.114 4.114 8 C -0.097 4.097 9 H 0.093 0.907 10 C 0.515 3.485 11 O -0.532 6.532 12 N -0.724 5.724 13 C 0.111 3.889 14 C 0.145 3.855 15 N -0.730 5.730 16 C -0.244 4.244 17 H 0.072 0.928 18 C -0.012 4.012 19 N -0.931 5.931 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 H 0.084 0.916 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.398 0.602 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.386 0.614 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.882 -7.505 -23.243 24.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.040 4.040 3 C -0.212 4.212 4 C -0.146 4.146 5 C -0.161 4.161 6 C -0.154 4.154 7 C -0.152 4.152 8 C -0.118 4.118 9 H 0.111 0.889 10 C 0.301 3.699 11 O -0.410 6.410 12 N -0.375 5.375 13 C -0.013 4.013 14 C 0.016 3.984 15 N -0.375 5.375 16 C -0.375 4.375 17 H 0.090 0.910 18 C -0.208 4.208 19 N -0.579 5.579 20 Si 0.741 3.259 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 H 0.103 0.897 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.232 0.768 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.220 0.780 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.432 -6.882 -23.159 24.402 hybrid contribution 0.412 -0.455 1.028 1.197 sum 3.844 -7.337 -22.131 23.630 Atomic orbital electron populations 1.22205 0.94168 1.01554 1.03407 1.20224 0.96430 0.94971 0.92345 1.22123 0.99876 0.95602 1.03603 1.21631 1.00355 0.95276 0.97366 1.21605 1.01274 0.95671 0.97544 1.21511 1.00788 0.98812 0.94269 1.21590 1.01860 0.93211 0.98542 1.21383 1.01573 0.95776 0.93093 0.88857 1.20563 0.80340 0.84560 0.84431 1.90575 1.37719 1.26407 1.86261 1.46010 1.53531 1.31993 1.05937 1.21556 0.99556 0.96691 0.83475 1.20756 0.96659 0.95005 0.85935 1.42197 1.61566 1.33562 1.00152 1.19195 1.26138 1.08969 0.83231 0.91048 1.24782 1.00222 0.97847 0.97982 1.69667 1.38910 1.20744 1.28561 0.86148 0.77488 0.78103 0.84178 1.21623 1.21680 1.20697 0.89696 0.93361 0.92982 0.93676 0.93187 0.89547 0.91848 0.92113 0.92211 0.91540 0.91856 0.91758 0.90918 0.91417 0.76834 0.91396 0.91384 0.95873 0.95888 0.78012 0.93355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 7.48 37.16 0.28 -1.46 16 2 C -0.04 -0.40 0.51 -154.51 -0.08 -0.48 16 3 C -0.16 -1.74 8.18 37.16 0.30 -1.43 16 4 C -0.11 -0.88 4.73 -26.73 -0.13 -1.01 16 5 C -0.12 -0.90 5.65 -26.73 -0.15 -1.05 16 6 C -0.12 -0.83 5.92 -26.73 -0.16 -0.99 16 7 C -0.11 -0.98 4.83 -26.73 -0.13 -1.11 16 8 C -0.10 -0.98 1.84 -91.78 -0.17 -1.15 16 9 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 10 C 0.51 7.03 6.57 -10.99 -0.07 6.96 16 11 O -0.53 -9.00 11.35 5.56 0.06 -8.94 16 12 N -0.72 -9.76 5.45 -60.29 -0.33 -10.09 16 13 C 0.11 1.90 5.79 -4.04 -0.02 1.88 16 14 C 0.14 2.84 6.37 -4.04 -0.03 2.82 16 15 N -0.73 -18.65 5.60 -59.90 -0.34 -18.99 16 16 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 17 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 20 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H 0.08 1.19 5.51 -51.93 -0.29 0.90 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.53 4.81 -51.93 -0.25 0.28 16 27 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 1.21 5.51 -51.93 -0.29 0.92 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.51 6.43 -51.93 -0.33 0.18 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.70 6.43 -51.93 -0.33 0.36 16 37 H 0.07 0.53 7.56 -51.93 -0.39 0.14 16 38 H 0.40 4.32 7.89 -40.82 -0.32 3.99 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.39 10.45 7.67 -40.82 -0.31 10.14 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 333.49 15.07 5.03 5.03 Total: -1.00 -31.43 333.49 -8.03 -39.46 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -7.56 Total: 8.33 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -0.60 Total: -4.48 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: 0.06 Total: -56.72 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.06 Total: -8.94 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.43 -8.03 -39.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152910400.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.584 kcal (2) G-P(sol) polarization free energy of solvation -31.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds