Wall clock time and date at job start Mon Mar 30 2020 01:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46965 * 2 1 4 4 C 1.53005 * 109.46733 * 240.00506 * 2 1 3 5 5 C 1.52999 * 109.47159 * 299.99162 * 4 2 1 6 6 C 1.52997 * 109.47317 * 300.00546 * 5 4 2 7 7 C 1.53000 * 109.47060 * 59.99960 * 6 5 4 8 8 C 1.52997 * 109.47457 * 120.00135 * 2 1 3 9 9 H 1.09002 * 109.46695 * 179.97438 * 8 2 1 10 10 C 1.50693 * 109.46989 * 299.99936 * 8 2 1 11 11 O 1.21279 * 120.00474 * 0.02562 * 10 8 2 12 12 N 1.34780 * 119.99572 * 179.97438 * 10 8 2 13 13 C 1.46505 * 119.99795 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.46958 * 180.02562 * 13 12 10 15 15 N 1.46505 * 109.46958 * 179.97438 * 14 13 12 16 16 C 1.36939 * 119.99776 * 180.02562 * 15 14 13 17 17 H 1.07993 * 120.00126 * 359.97438 * 16 15 14 18 18 C 1.38817 * 119.99653 * 180.02562 * 16 15 14 19 19 N 1.31620 * 119.99966 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99527 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47030 * 89.99810 * 20 18 16 22 22 H 1.48503 * 109.46658 * 209.99521 * 20 18 16 23 23 H 1.48490 * 109.47315 * 329.99517 * 20 18 16 24 24 H 1.09004 * 109.46976 * 299.99579 * 1 2 3 25 25 H 1.09000 * 109.47380 * 59.99705 * 1 2 3 26 26 H 1.09001 * 109.46989 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47067 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47312 * 300.00337 * 3 2 1 29 29 H 1.09004 * 109.46930 * 60.00393 * 3 2 1 30 30 H 1.09000 * 109.47360 * 59.99776 * 4 2 1 31 31 H 1.09002 * 109.46935 * 179.97438 * 4 2 1 32 32 H 1.08996 * 109.46929 * 179.97438 * 5 4 2 33 33 H 1.09002 * 109.46716 * 60.00455 * 5 4 2 34 34 H 1.09002 * 109.47153 * 299.99641 * 6 5 4 35 35 H 1.09001 * 109.46832 * 179.97438 * 6 5 4 36 36 H 1.08992 * 109.47399 * 59.99823 * 7 6 5 37 37 H 1.09004 * 109.46724 * 180.02562 * 7 6 5 38 38 H 0.96996 * 120.00598 * 0.02562 * 12 10 8 39 39 H 1.09001 * 109.47372 * 300.00184 * 13 12 10 40 40 H 1.09002 * 109.47068 * 60.00271 * 13 12 10 41 41 H 1.08998 * 109.47387 * 300.00672 * 14 13 12 42 42 H 1.09002 * 109.46838 * 60.00668 * 14 13 12 43 43 H 0.97004 * 119.99657 * 0.02562 * 15 14 13 44 44 H 0.96993 * 119.99705 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.5300 -2.1637 -1.2494 6 6 2.0401 -2.8850 -0.0002 7 6 1.5301 -2.1638 1.2491 8 6 2.0400 -0.7213 1.2492 9 1 3.1301 -0.7216 1.2488 10 6 1.5378 -0.0109 2.4796 11 8 0.8401 0.9749 2.3685 12 7 1.8631 -0.4717 3.7037 13 6 1.3743 0.2185 4.8999 14 6 1.8845 -0.5027 6.1491 15 7 1.3963 0.1879 7.3454 16 6 1.7278 -0.2797 8.5891 17 1 2.3487 -1.1577 8.6881 18 6 1.2647 0.3744 9.7225 19 7 0.5075 1.4442 9.6018 20 14 1.7163 -0.2638 11.4190 21 1 2.9787 0.3759 11.8687 22 1 0.6283 0.0616 12.3760 23 1 1.9006 -1.7361 11.3611 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8901 30 1 1.6765 -0.2073 -2.1393 31 1 3.1299 -0.7208 -1.2496 32 1 1.8929 -2.6773 -2.1396 33 1 0.4400 -2.1637 -1.2493 34 1 3.1301 -2.8849 -0.0003 35 1 1.6764 -3.9125 0.0000 36 1 0.4402 -2.1638 1.2491 37 1 1.8939 -2.6774 2.1390 38 1 2.4207 -1.2603 3.7927 39 1 1.7375 1.2462 4.9004 40 1 0.2843 0.2184 4.8996 41 1 1.5218 -1.5306 6.1489 42 1 2.9746 -0.5021 6.1492 43 1 0.8382 0.9763 7.2564 44 1 0.1842 1.9014 10.3938 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152910400.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:20 Heat of formation + Delta-G solvation = -72.591706 kcal Electronic energy + Delta-G solvation = -21117.739921 eV Core-core repulsion = 18068.295612 eV Total energy + Delta-G solvation = -3049.444309 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.78636 -39.14906 -37.26815 -35.60208 -33.93634 -33.22409 -32.04538 -29.40397 -28.20835 -27.40439 -25.60861 -24.24040 -23.10560 -22.02335 -21.39066 -19.53246 -19.17426 -17.98573 -16.94411 -16.70053 -16.50552 -15.87194 -15.75451 -15.42261 -15.18374 -15.11467 -14.99527 -14.70163 -13.99862 -13.92452 -13.45107 -13.21362 -13.04011 -12.78642 -12.75010 -12.53974 -12.48388 -12.34631 -12.15901 -12.08920 -12.00361 -11.87257 -11.75052 -11.50962 -11.01616 -10.99490 -10.90077 -10.27068 -10.03704 -9.07787 -7.97749 -5.29370 1.47994 1.50502 1.58975 1.68437 2.15936 2.57973 3.36506 3.57230 3.71980 3.76840 4.01379 4.11994 4.17593 4.20951 4.24894 4.35534 4.42545 4.46272 4.53272 4.57886 4.59680 4.77138 4.88050 4.91625 5.01144 5.02951 5.10819 5.12918 5.17480 5.18430 5.25422 5.26267 5.35459 5.40271 5.46306 5.48915 5.50124 5.66555 5.74887 6.23043 6.60778 7.29112 7.33595 8.00953 8.24065 9.26023 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.040405 B = 0.003238 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.824910 B = 8645.737955 C = 9056.119426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.040 4.040 3 C -0.153 4.153 4 C -0.103 4.103 5 C -0.123 4.123 6 C -0.112 4.112 7 C -0.113 4.113 8 C -0.089 4.089 9 H 0.113 0.887 10 C 0.510 3.490 11 O -0.568 6.568 12 N -0.714 5.714 13 C 0.130 3.870 14 C 0.149 3.851 15 N -0.748 5.748 16 C -0.249 4.249 17 H 0.083 0.917 18 C -0.077 4.077 19 N -0.971 5.971 20 Si 0.980 3.020 21 H -0.286 1.286 22 H -0.296 1.296 23 H -0.265 1.265 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.414 0.586 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.037 0.963 42 H 0.036 0.964 43 H 0.373 0.627 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.558 -9.834 -24.455 26.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.041 4.041 3 C -0.211 4.211 4 C -0.141 4.141 5 C -0.161 4.161 6 C -0.149 4.149 7 C -0.151 4.151 8 C -0.110 4.110 9 H 0.131 0.869 10 C 0.298 3.702 11 O -0.447 6.447 12 N -0.367 5.367 13 C 0.005 3.995 14 C 0.022 3.978 15 N -0.391 5.391 16 C -0.381 4.381 17 H 0.101 0.899 18 C -0.269 4.269 19 N -0.622 5.622 20 Si 0.808 3.192 21 H -0.212 1.212 22 H -0.223 1.223 23 H -0.190 1.190 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.251 0.749 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.205 0.795 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.148 -9.270 -24.412 26.615 hybrid contribution -0.118 0.283 1.314 1.350 sum 5.030 -8.987 -23.097 25.289 Atomic orbital electron populations 1.22139 0.95258 1.01669 1.01927 1.20259 0.95566 0.94623 0.93624 1.22074 1.00491 0.96248 1.02242 1.21588 1.00961 0.95569 0.95948 1.21613 1.00927 0.95140 0.98371 1.21505 1.01487 0.98967 0.92990 1.21611 1.01098 0.92180 1.00166 1.21422 1.02532 0.96248 0.90774 0.86875 1.21330 0.79536 0.84141 0.85195 1.90589 1.39235 1.28120 1.86764 1.45847 1.53686 1.32314 1.04828 1.21088 0.98328 0.95914 0.84207 1.20848 0.97089 0.95077 0.84747 1.42443 1.61634 1.33610 1.01419 1.19662 1.25259 1.08855 0.84300 0.89892 1.25685 1.00802 0.98398 1.02032 1.69839 1.40695 1.22388 1.29236 0.85051 0.76779 0.78274 0.79091 1.21249 1.22290 1.18957 0.93000 0.92933 0.92053 0.92574 0.92633 0.92793 0.91518 0.90994 0.90688 0.92199 0.90642 0.90733 0.92242 0.90362 0.74945 0.93172 0.93173 0.94549 0.94585 0.79510 0.93885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 7.48 71.98 0.54 -2.84 16 2 C -0.04 -0.76 0.51 -52.18 -0.03 -0.79 16 3 C -0.15 -3.36 8.18 71.98 0.59 -2.77 16 4 C -0.10 -1.39 4.73 30.60 0.14 -1.25 16 5 C -0.12 -1.41 5.65 30.59 0.17 -1.24 16 6 C -0.11 -1.21 5.92 30.59 0.18 -1.03 16 7 C -0.11 -1.67 4.83 30.60 0.15 -1.52 16 8 C -0.09 -1.64 1.84 -11.54 -0.02 -1.66 16 9 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 10 C 0.51 13.77 6.57 87.65 0.58 14.35 16 11 O -0.57 -19.93 11.35 -3.03 -0.03 -19.96 16 12 N -0.71 -18.66 5.45 -463.05 -2.52 -21.19 16 13 C 0.13 4.50 5.79 86.38 0.50 5.00 16 14 C 0.15 5.75 6.37 86.38 0.55 6.30 16 15 N -0.75 -38.47 5.60 -343.44 -1.92 -40.39 16 16 C -0.25 -13.88 9.99 84.03 0.84 -13.04 16 17 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 18 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 19 N -0.97 -60.33 13.06 21.65 0.28 -60.04 16 20 Si 0.98 45.85 29.55 68.60 2.03 47.87 16 21 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 22 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 23 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 24 H 0.05 1.51 5.51 -2.38 -0.01 1.50 16 25 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.06 1.21 4.81 -2.39 -0.01 1.20 16 27 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.05 1.56 5.51 -2.38 -0.01 1.55 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.78 6.43 -2.39 -0.02 0.76 16 34 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 1.05 6.43 -2.39 -0.02 1.04 16 37 H 0.08 1.00 7.56 -2.39 -0.02 0.98 16 38 H 0.41 8.11 7.89 -92.71 -0.73 7.37 16 39 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.37 20.80 7.67 -92.71 -0.71 20.09 16 44 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -68.62 333.49 2.03 -66.59 By element: Atomic # 1 Polarization: 32.05 SS G_CDS: -0.45 Total: 31.59 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 4.66 Total: -4.47 kcal Atomic # 7 Polarization: -117.46 SS G_CDS: -4.16 Total: -121.62 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.03 Total: -19.96 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -68.62 2.03 -66.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152910400.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.004 kcal (2) G-P(sol) polarization free energy of solvation -68.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds