Wall clock time and date at job start Mon Mar 30 2020 01:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47346 * 2 1 4 4 C 1.53000 * 109.47328 * 239.99600 * 2 1 3 5 5 C 1.52996 * 109.47518 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47131 * 59.99828 * 5 4 2 7 7 C 1.53005 * 109.47452 * 300.00126 * 6 5 4 8 8 C 1.52996 * 109.46543 * 59.99968 * 7 6 5 9 9 H 1.08992 * 109.47546 * 60.00592 * 8 7 6 10 10 C 1.50701 * 109.46668 * 180.02562 * 8 7 6 11 11 O 1.21288 * 120.00292 * 119.99996 * 10 8 7 12 12 N 1.34777 * 120.00115 * 299.99906 * 10 8 7 13 13 C 1.46500 * 120.00376 * 180.02562 * 12 10 8 14 14 C 1.52997 * 109.47473 * 180.02562 * 13 12 10 15 15 N 1.46505 * 109.47212 * 179.97438 * 14 13 12 16 16 C 1.36936 * 119.99992 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99834 * 0.02562 * 16 15 14 18 18 C 1.38801 * 120.00093 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00176 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00265 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46968 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47299 * 119.99957 * 20 18 16 23 23 H 1.48495 * 109.47075 * 240.00117 * 20 18 16 24 24 H 1.09004 * 109.47108 * 300.00289 * 1 2 3 25 25 H 1.09000 * 109.46870 * 60.00183 * 1 2 3 26 26 H 1.09001 * 109.47367 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47070 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.46986 * 299.99746 * 3 2 1 29 29 H 1.08993 * 109.47662 * 59.99968 * 3 2 1 30 30 H 1.09001 * 109.46741 * 300.00193 * 4 2 1 31 31 H 1.09000 * 109.46968 * 60.00277 * 4 2 1 32 32 H 1.08992 * 109.47534 * 180.02562 * 5 4 2 33 33 H 1.09001 * 109.46997 * 300.00254 * 5 4 2 34 34 H 1.08998 * 109.47533 * 60.00505 * 6 5 4 35 35 H 1.09002 * 109.47153 * 180.02562 * 6 5 4 36 36 H 1.09001 * 109.46812 * 300.00216 * 7 6 5 37 37 H 1.08992 * 109.47061 * 179.97438 * 7 6 5 38 38 H 0.97004 * 120.00228 * 0.02562 * 12 10 8 39 39 H 1.09002 * 109.47129 * 59.99747 * 13 12 10 40 40 H 1.08998 * 109.46845 * 300.00553 * 13 12 10 41 41 H 1.09002 * 109.47153 * 59.99757 * 14 13 12 42 42 H 1.09001 * 109.46832 * 299.99948 * 14 13 12 43 43 H 0.96996 * 119.99606 * 0.02562 * 15 14 13 44 44 H 0.97001 * 120.00803 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0004 7 6 3.5695 -0.7221 1.2497 8 6 2.0396 -0.7216 1.2493 9 1 1.6758 -1.7490 1.2492 10 6 1.5372 -0.0106 2.4794 11 8 0.8403 0.9758 2.3677 12 7 1.8624 -0.4707 3.7037 13 6 1.3737 0.2201 4.8996 14 6 1.8838 -0.5005 6.1492 15 7 1.3955 0.1908 7.3451 16 6 1.7260 -0.2767 8.5890 17 1 2.3470 -1.1548 8.6885 18 6 1.2630 0.3779 9.7220 19 7 0.5058 1.4476 9.6008 20 14 1.7144 -0.2594 11.4190 21 1 2.5692 -1.4661 11.2833 22 1 2.4564 0.7913 12.1611 23 1 0.4770 -0.6096 12.1615 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9564 0.8899 30 1 1.6766 -1.7490 -1.2491 31 1 1.6767 -0.2075 -2.1392 32 1 3.9333 -1.2354 -2.1390 33 1 3.9337 0.3056 -1.2487 34 1 3.7159 -2.4709 0.0003 35 1 5.1695 -1.4434 0.0008 36 1 3.9332 0.3055 1.2497 37 1 3.9321 -1.2364 2.1396 38 1 2.4201 -1.2594 3.7932 39 1 0.2837 0.2201 4.8993 40 1 1.7369 1.2478 4.8994 41 1 2.9738 -0.5001 6.1493 42 1 1.5208 -1.5283 6.1495 43 1 0.8375 0.9791 7.2556 44 1 0.1819 1.9049 10.3926 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152910401.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:23 Heat of formation + Delta-G solvation = -52.104311 kcal Electronic energy + Delta-G solvation = -21117.105561 eV Core-core repulsion = 18068.549653 eV Total energy + Delta-G solvation = -3048.555909 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.84054 -38.15912 -35.69989 -34.04780 -33.05242 -31.72717 -30.83704 -27.91670 -27.27730 -26.46376 -23.97032 -23.17047 -21.58545 -21.24207 -20.32371 -18.60030 -17.29793 -16.89229 -15.75267 -15.48912 -14.98822 -14.80160 -14.55718 -14.48640 -14.06088 -13.95815 -13.27487 -13.17192 -13.11791 -12.98337 -12.53554 -12.01887 -11.90550 -11.61237 -11.57460 -11.28576 -11.19902 -11.11283 -10.97474 -10.82398 -10.79530 -10.72621 -10.31655 -10.20504 -10.07912 -9.80198 -9.21734 -8.96950 -8.76025 -6.99726 -5.80158 -3.10891 2.77084 3.32125 3.41667 3.47375 3.49538 4.36263 4.46341 4.51306 4.59189 4.89004 4.94774 5.04575 5.13397 5.16036 5.22508 5.30981 5.45553 5.49977 5.55404 5.59982 5.72329 5.74414 5.78450 5.82745 5.84044 5.88103 5.91731 5.96831 6.01904 6.04022 6.15036 6.16828 6.24587 6.42643 6.51714 6.63376 6.71017 6.81363 7.65702 7.68138 8.37082 8.41892 9.48795 10.03746 10.38497 11.42497 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.040405 B = 0.003238 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.822282 B = 8645.439066 C = 9055.921088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.039 4.039 3 C -0.156 4.156 4 C -0.109 4.109 5 C -0.124 4.124 6 C -0.116 4.116 7 C -0.114 4.114 8 C -0.097 4.097 9 H 0.093 0.907 10 C 0.515 3.485 11 O -0.532 6.532 12 N -0.724 5.724 13 C 0.111 3.889 14 C 0.145 3.855 15 N -0.730 5.730 16 C -0.243 4.243 17 H 0.072 0.928 18 C -0.012 4.012 19 N -0.931 5.931 20 Si 0.910 3.090 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 H 0.086 0.914 25 H 0.049 0.951 26 H 0.044 0.956 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.398 0.602 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.024 0.976 42 H 0.023 0.977 43 H 0.386 0.614 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.785 -6.204 -23.263 24.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.040 4.040 3 C -0.213 4.213 4 C -0.146 4.146 5 C -0.161 4.161 6 C -0.154 4.154 7 C -0.152 4.152 8 C -0.118 4.118 9 H 0.111 0.889 10 C 0.301 3.699 11 O -0.410 6.410 12 N -0.375 5.375 13 C -0.013 4.013 14 C 0.016 3.984 15 N -0.375 5.375 16 C -0.374 4.374 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.579 5.579 20 Si 0.741 3.259 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 H 0.105 0.895 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.232 0.768 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.220 0.780 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.345 -5.584 -23.183 24.437 hybrid contribution 0.293 -0.523 1.031 1.193 sum 5.638 -6.107 -22.151 23.659 Atomic orbital electron populations 1.22123 0.94187 1.01294 1.03605 1.20225 0.95823 0.95577 0.92345 1.22203 1.00329 0.95388 1.03408 1.21630 0.95334 1.00293 0.97370 1.21604 0.95892 1.01056 0.97543 1.21512 1.00283 0.99318 0.94269 1.21590 0.93075 1.01998 0.98543 1.21385 0.96889 1.00453 0.93093 0.88853 1.20569 0.80204 0.84703 0.84429 1.90577 1.37833 1.26300 1.86256 1.46010 1.53500 1.32021 1.05935 1.21553 0.99551 0.96690 0.83484 1.20756 0.96669 0.94998 0.85934 1.42203 1.61593 1.33525 1.00169 1.19239 1.26084 1.08909 0.83214 0.90994 1.24779 1.00260 0.97834 0.97988 1.69677 1.38984 1.20754 1.28454 0.86082 0.77560 0.77879 0.84428 1.20500 1.21770 1.21767 0.89547 0.93183 0.93676 0.92985 0.93362 0.89695 0.92114 0.91843 0.92211 0.91541 0.91857 0.91759 0.90918 0.91416 0.76833 0.91393 0.91389 0.95868 0.95881 0.78016 0.93406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 8.17 37.16 0.30 -1.43 16 2 C -0.04 -0.40 0.51 -154.51 -0.08 -0.48 16 3 C -0.16 -1.74 7.48 37.16 0.28 -1.46 16 4 C -0.11 -0.88 4.73 -26.73 -0.13 -1.01 16 5 C -0.12 -0.90 5.65 -26.73 -0.15 -1.05 16 6 C -0.12 -0.83 5.92 -26.73 -0.16 -0.99 16 7 C -0.11 -0.98 4.83 -26.73 -0.13 -1.11 16 8 C -0.10 -0.98 1.84 -91.77 -0.17 -1.15 16 9 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 10 C 0.51 7.02 6.57 -10.98 -0.07 6.95 16 11 O -0.53 -9.00 11.34 5.55 0.06 -8.94 16 12 N -0.72 -9.75 5.45 -60.29 -0.33 -10.08 16 13 C 0.11 1.90 5.79 -4.04 -0.02 1.88 16 14 C 0.14 2.84 6.37 -4.04 -0.03 2.81 16 15 N -0.73 -18.65 5.60 -59.91 -0.34 -18.98 16 16 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 17 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 20 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H 0.09 1.21 5.51 -51.93 -0.29 0.92 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.53 4.81 -51.93 -0.25 0.28 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 1.19 5.51 -51.93 -0.29 0.90 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.51 6.43 -51.93 -0.33 0.18 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.70 6.43 -51.93 -0.33 0.36 16 37 H 0.07 0.53 7.56 -51.93 -0.39 0.14 16 38 H 0.40 4.31 7.89 -40.82 -0.32 3.99 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.39 10.44 7.67 -40.82 -0.31 10.13 16 44 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 333.48 15.07 5.03 5.03 Total: -1.00 -31.44 333.48 -8.03 -39.47 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -7.56 Total: 8.28 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -0.60 Total: -4.47 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 0.06 Total: -56.69 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.06 Total: -8.94 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.44 -8.03 -39.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152910401.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.630 kcal (2) G-P(sol) polarization free energy of solvation -31.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds