Wall clock time and date at job start Mon Mar 30 2020 01:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47346 * 2 1 4 4 C 1.53000 * 109.47328 * 239.99600 * 2 1 3 5 5 C 1.52996 * 109.47518 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47131 * 59.99828 * 5 4 2 7 7 C 1.53005 * 109.47452 * 300.00126 * 6 5 4 8 8 C 1.52996 * 109.46543 * 59.99968 * 7 6 5 9 9 H 1.08992 * 109.47546 * 60.00592 * 8 7 6 10 10 C 1.50701 * 109.46668 * 180.02562 * 8 7 6 11 11 O 1.21288 * 120.00292 * 119.99996 * 10 8 7 12 12 N 1.34777 * 120.00115 * 299.99906 * 10 8 7 13 13 C 1.46500 * 120.00376 * 180.02562 * 12 10 8 14 14 C 1.52997 * 109.47473 * 180.02562 * 13 12 10 15 15 N 1.46505 * 109.47212 * 179.97438 * 14 13 12 16 16 C 1.36936 * 119.99992 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99834 * 0.02562 * 16 15 14 18 18 C 1.38801 * 120.00093 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00176 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00265 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46968 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47299 * 119.99957 * 20 18 16 23 23 H 1.48495 * 109.47075 * 240.00117 * 20 18 16 24 24 H 1.09004 * 109.47108 * 300.00289 * 1 2 3 25 25 H 1.09000 * 109.46870 * 60.00183 * 1 2 3 26 26 H 1.09001 * 109.47367 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47070 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.46986 * 299.99746 * 3 2 1 29 29 H 1.08993 * 109.47662 * 59.99968 * 3 2 1 30 30 H 1.09001 * 109.46741 * 300.00193 * 4 2 1 31 31 H 1.09000 * 109.46968 * 60.00277 * 4 2 1 32 32 H 1.08992 * 109.47534 * 180.02562 * 5 4 2 33 33 H 1.09001 * 109.46997 * 300.00254 * 5 4 2 34 34 H 1.08998 * 109.47533 * 60.00505 * 6 5 4 35 35 H 1.09002 * 109.47153 * 180.02562 * 6 5 4 36 36 H 1.09001 * 109.46812 * 300.00216 * 7 6 5 37 37 H 1.08992 * 109.47061 * 179.97438 * 7 6 5 38 38 H 0.97004 * 120.00228 * 0.02562 * 12 10 8 39 39 H 1.09002 * 109.47129 * 59.99747 * 13 12 10 40 40 H 1.08998 * 109.46845 * 300.00553 * 13 12 10 41 41 H 1.09002 * 109.47153 * 59.99757 * 14 13 12 42 42 H 1.09001 * 109.46832 * 299.99948 * 14 13 12 43 43 H 0.96996 * 119.99606 * 0.02562 * 15 14 13 44 44 H 0.97001 * 120.00803 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0004 7 6 3.5695 -0.7221 1.2497 8 6 2.0396 -0.7216 1.2493 9 1 1.6758 -1.7490 1.2492 10 6 1.5372 -0.0106 2.4794 11 8 0.8403 0.9758 2.3677 12 7 1.8624 -0.4707 3.7037 13 6 1.3737 0.2201 4.8996 14 6 1.8838 -0.5005 6.1492 15 7 1.3955 0.1908 7.3451 16 6 1.7260 -0.2767 8.5890 17 1 2.3470 -1.1548 8.6885 18 6 1.2630 0.3779 9.7220 19 7 0.5058 1.4476 9.6008 20 14 1.7144 -0.2594 11.4190 21 1 2.5692 -1.4661 11.2833 22 1 2.4564 0.7913 12.1611 23 1 0.4770 -0.6096 12.1615 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9564 0.8899 30 1 1.6766 -1.7490 -1.2491 31 1 1.6767 -0.2075 -2.1392 32 1 3.9333 -1.2354 -2.1390 33 1 3.9337 0.3056 -1.2487 34 1 3.7159 -2.4709 0.0003 35 1 5.1695 -1.4434 0.0008 36 1 3.9332 0.3055 1.2497 37 1 3.9321 -1.2364 2.1396 38 1 2.4201 -1.2594 3.7932 39 1 0.2837 0.2201 4.8993 40 1 1.7369 1.2478 4.8994 41 1 2.9738 -0.5001 6.1493 42 1 1.5208 -1.5283 6.1495 43 1 0.8375 0.9791 7.2556 44 1 0.1819 1.9049 10.3926 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152910401.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:22 Heat of formation + Delta-G solvation = -72.662583 kcal Electronic energy + Delta-G solvation = -21117.997035 eV Core-core repulsion = 18068.549653 eV Total energy + Delta-G solvation = -3049.447382 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.78585 -39.14837 -37.26940 -35.60349 -33.93647 -33.22425 -32.04571 -29.40500 -28.20893 -27.40429 -25.61152 -24.24081 -23.10628 -22.02286 -21.39063 -19.53289 -19.17554 -17.98557 -16.94613 -16.70056 -16.50481 -15.87250 -15.75431 -15.42424 -15.18629 -15.11483 -14.99271 -14.70304 -13.99900 -13.92435 -13.45102 -13.21767 -13.04409 -12.79682 -12.76948 -12.52976 -12.48526 -12.34585 -12.15747 -12.05337 -12.00346 -11.86694 -11.75028 -11.50946 -11.01872 -11.00845 -10.90065 -10.27010 -10.03677 -9.07841 -7.97902 -5.29557 1.48066 1.49508 1.59684 1.68446 2.15866 2.57793 3.36515 3.57191 3.72003 3.76873 4.01368 4.11904 4.17590 4.20973 4.24850 4.35539 4.42538 4.46291 4.53300 4.57915 4.59691 4.77198 4.88072 4.91658 5.01142 5.02961 5.10852 5.12904 5.17488 5.18466 5.25431 5.26271 5.35486 5.40312 5.46399 5.48967 5.50185 5.66597 5.74927 6.22987 6.60758 7.29045 7.33604 8.00812 8.23886 9.26031 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.040405 B = 0.003238 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.822282 B = 8645.439066 C = 9055.921088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.040 4.040 3 C -0.153 4.153 4 C -0.103 4.103 5 C -0.123 4.123 6 C -0.112 4.112 7 C -0.113 4.113 8 C -0.089 4.089 9 H 0.113 0.887 10 C 0.510 3.490 11 O -0.568 6.568 12 N -0.714 5.714 13 C 0.130 3.870 14 C 0.149 3.851 15 N -0.748 5.748 16 C -0.248 4.248 17 H 0.083 0.917 18 C -0.077 4.077 19 N -0.971 5.971 20 Si 0.979 3.021 21 H -0.261 1.261 22 H -0.293 1.293 23 H -0.293 1.293 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.414 0.586 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.037 0.963 42 H 0.036 0.964 43 H 0.373 0.627 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.417 -8.577 -24.486 26.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.041 4.041 3 C -0.210 4.210 4 C -0.141 4.141 5 C -0.161 4.161 6 C -0.150 4.150 7 C -0.151 4.151 8 C -0.110 4.110 9 H 0.131 0.869 10 C 0.298 3.702 11 O -0.447 6.447 12 N -0.367 5.367 13 C 0.005 3.995 14 C 0.022 3.978 15 N -0.391 5.391 16 C -0.379 4.379 17 H 0.101 0.899 18 C -0.270 4.270 19 N -0.622 5.622 20 Si 0.808 3.192 21 H -0.185 1.185 22 H -0.220 1.220 23 H -0.220 1.220 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.251 0.749 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.205 0.795 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.020 -8.014 -24.447 26.667 hybrid contribution -0.224 0.230 1.322 1.360 sum 6.796 -7.784 -23.125 25.329 Atomic orbital electron populations 1.22074 0.95208 1.01533 1.02245 1.20259 0.95013 0.95174 0.93625 1.22138 1.00852 0.96071 1.01927 1.21587 0.96021 1.00506 0.95953 1.21612 0.95073 1.00995 0.98371 1.21506 1.00900 0.99553 0.92992 1.21610 0.91543 1.01737 1.00166 1.21424 0.98068 1.00701 0.90774 0.86872 1.21336 0.79373 0.84310 0.85192 1.90591 1.39339 1.28025 1.86760 1.45846 1.53665 1.32331 1.04827 1.21085 0.98330 0.95908 0.84215 1.20849 0.97116 0.95057 0.84744 1.42450 1.61655 1.33576 1.01434 1.19695 1.25183 1.08760 0.84278 0.89874 1.25679 1.00858 0.98389 1.02024 1.69844 1.40764 1.22399 1.29167 0.84990 0.77160 0.77697 0.79373 1.18520 1.22040 1.22038 0.92794 0.92631 0.92574 0.92055 0.92935 0.92999 0.90994 0.91515 0.90689 0.92202 0.90642 0.90735 0.92243 0.90357 0.74943 0.93164 0.93185 0.94539 0.94570 0.79511 0.93894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 8.17 71.98 0.59 -2.77 16 2 C -0.04 -0.76 0.51 -52.18 -0.03 -0.79 16 3 C -0.15 -3.38 7.48 71.98 0.54 -2.84 16 4 C -0.10 -1.39 4.73 30.59 0.14 -1.24 16 5 C -0.12 -1.41 5.65 30.59 0.17 -1.24 16 6 C -0.11 -1.21 5.92 30.60 0.18 -1.03 16 7 C -0.11 -1.67 4.83 30.59 0.15 -1.52 16 8 C -0.09 -1.64 1.84 -11.54 -0.02 -1.66 16 9 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 10 C 0.51 13.76 6.57 87.66 0.58 14.33 16 11 O -0.57 -19.92 11.34 -3.05 -0.03 -19.96 16 12 N -0.71 -18.64 5.45 -463.06 -2.52 -21.17 16 13 C 0.13 4.49 5.79 86.38 0.50 4.99 16 14 C 0.15 5.74 6.37 86.38 0.55 6.29 16 15 N -0.75 -38.44 5.60 -343.45 -1.92 -40.36 16 16 C -0.25 -13.78 9.99 84.03 0.84 -12.94 16 17 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 18 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 19 N -0.97 -60.31 13.06 21.65 0.28 -60.03 16 20 Si 0.98 45.86 29.55 68.60 2.03 47.89 16 21 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 22 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 24 H 0.05 1.56 5.51 -2.38 -0.01 1.55 16 25 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.06 1.21 4.81 -2.39 -0.01 1.20 16 28 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.05 1.51 5.51 -2.39 -0.01 1.50 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.78 6.43 -2.39 -0.02 0.76 16 34 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 1.05 6.43 -2.39 -0.02 1.03 16 37 H 0.08 1.00 7.56 -2.39 -0.02 0.98 16 38 H 0.41 8.09 7.89 -92.71 -0.73 7.36 16 39 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.37 20.79 7.67 -92.71 -0.71 20.08 16 44 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -68.64 333.48 2.03 -66.61 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: -0.45 Total: 31.42 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 4.66 Total: -4.40 kcal Atomic # 7 Polarization: -117.39 SS G_CDS: -4.16 Total: -121.56 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.03 Total: -19.96 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -68.64 2.03 -66.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152910401.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.051 kcal (2) G-P(sol) polarization free energy of solvation -68.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds