Wall clock time and date at job start Mon Mar 30 2020 01:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53005 * 109.47452 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46543 * 59.99968 * 4 3 2 6 6 C 1.53008 * 109.46896 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47589 * 60.00250 * 5 4 3 8 8 O 1.21282 * 119.99684 * 359.97438 * 7 5 4 9 9 N 1.34769 * 120.00466 * 179.97438 * 7 5 4 10 10 C 1.46500 * 120.00241 * 179.97438 * 9 7 5 11 11 C 1.53006 * 109.46998 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46998 * 180.02562 * 11 10 9 13 13 C 1.36931 * 120.00396 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99774 * 359.97438 * 13 12 11 15 15 C 1.38806 * 120.00545 * 180.02562 * 13 12 11 16 16 N 1.31622 * 119.99833 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00256 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47136 * 89.99695 * 17 15 13 19 19 H 1.48503 * 109.47098 * 209.99762 * 17 15 13 20 20 H 1.48496 * 109.47087 * 329.99418 * 17 15 13 21 21 C 1.53001 * 109.47628 * 300.00145 * 5 4 3 22 22 C 1.52995 * 109.47136 * 59.99753 * 21 5 4 23 23 H 1.08998 * 109.47624 * 59.99682 * 1 2 3 24 24 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47045 * 300.00058 * 1 2 3 26 26 H 1.09001 * 109.47375 * 119.99867 * 2 1 3 27 27 H 1.09002 * 109.47153 * 60.00008 * 3 2 1 28 28 H 1.09001 * 109.47289 * 299.99925 * 3 2 1 29 29 H 1.09001 * 109.46812 * 300.00216 * 4 3 2 30 30 H 1.08992 * 109.47061 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.47188 * 299.99992 * 6 5 4 32 32 H 1.09001 * 109.46630 * 60.00143 * 6 5 4 33 33 H 1.09002 * 109.47288 * 179.97438 * 6 5 4 34 34 H 0.97010 * 119.99849 * 0.02562 * 9 7 5 35 35 H 1.09000 * 109.47175 * 60.00333 * 10 9 7 36 36 H 1.09001 * 109.47297 * 299.99840 * 10 9 7 37 37 H 1.08993 * 109.46955 * 300.00226 * 11 10 9 38 38 H 1.09000 * 109.47050 * 60.00054 * 11 10 9 39 39 H 0.97010 * 119.99909 * 359.97438 * 12 11 10 40 40 H 0.97001 * 119.99731 * 180.02562 * 16 15 13 41 41 H 1.08992 * 109.47514 * 180.02562 * 21 5 4 42 42 H 1.09001 * 109.46652 * 300.00323 * 21 5 4 43 43 H 1.08999 * 109.47330 * 179.97438 * 22 21 5 44 44 H 1.09001 * 109.46885 * 60.00713 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0794 0.7215 -1.2502 6 6 5.6095 0.7220 -1.2513 7 6 3.5765 1.4320 -2.4804 8 8 2.8790 2.4179 -2.3687 9 7 3.9019 0.9721 -3.7047 10 6 3.4126 1.6625 -4.9005 11 6 3.9221 0.9414 -6.1501 12 7 3.4333 1.6322 -7.3460 13 6 3.7631 1.1644 -8.5899 14 1 4.3840 0.2863 -8.6894 15 6 3.3004 1.8192 -9.7230 16 7 2.5442 2.8896 -9.6017 17 14 3.7510 1.1813 -11.4199 18 1 2.7269 0.2043 -11.8695 19 1 3.8065 2.3158 -12.3765 20 1 5.0777 0.5167 -11.3627 21 6 3.5694 -0.7210 -1.2503 22 6 2.0394 -0.7211 -1.2495 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.9337 0.9285 0.8891 30 1 3.9333 2.4701 -0.0011 31 1 5.9724 1.7498 -1.2515 32 1 5.9735 0.2083 -0.3615 33 1 5.9724 0.2079 -2.1413 34 1 4.4596 0.1833 -3.7941 35 1 3.7752 2.6904 -4.9006 36 1 2.3226 1.6617 -4.9001 37 1 5.0120 0.9418 -6.1507 38 1 3.5591 -0.0864 -6.1499 39 1 2.8753 2.4207 -7.2566 40 1 2.2206 3.3470 -10.3936 41 1 3.9326 -1.2348 -2.1402 42 1 3.9332 -1.2350 -0.3605 43 1 1.6761 -1.7487 -1.2500 44 1 1.6757 -0.2071 -2.1393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152916923.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:54 Heat of formation + Delta-G solvation = -59.189740 kcal Electronic energy + Delta-G solvation = -21241.565458 eV Core-core repulsion = 18192.702302 eV Total energy + Delta-G solvation = -3048.863156 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.80432 -37.68243 -35.62149 -34.32092 -33.64063 -31.27889 -30.70812 -28.87358 -27.64318 -24.73965 -23.83404 -22.90985 -22.26642 -21.39899 -20.31361 -19.20441 -17.28778 -16.51414 -15.85531 -15.36719 -14.76266 -14.60158 -14.41468 -14.32247 -14.02191 -13.95083 -13.59967 -13.16794 -12.91954 -12.61252 -12.54793 -12.31507 -12.23594 -11.89033 -11.65850 -11.44037 -11.33605 -11.09914 -11.03238 -10.81760 -10.81022 -10.57134 -10.25539 -10.11641 -10.07592 -9.79794 -9.32844 -8.95888 -8.75298 -6.99307 -5.79592 -3.10286 2.81138 3.32299 3.42224 3.47480 3.49194 4.40196 4.47632 4.57844 4.59522 4.79745 4.89861 5.02942 5.13483 5.29158 5.34198 5.42370 5.45051 5.50184 5.50880 5.55391 5.62579 5.70162 5.72703 5.78759 5.79958 5.86049 5.93043 5.96906 5.98145 6.07354 6.16097 6.19002 6.22855 6.25085 6.46679 6.62859 6.71555 6.80494 7.65631 7.69593 8.37683 8.42661 9.49291 10.04280 10.39067 11.43022 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029986 B = 0.003540 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.552424 B = 7908.094997 C = 8174.305766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.130 4.130 4 C -0.090 4.090 5 C -0.080 4.080 6 C -0.142 4.142 7 C 0.523 3.477 8 O -0.537 6.537 9 N -0.723 5.723 10 C 0.111 3.889 11 C 0.145 3.855 12 N -0.730 5.730 13 C -0.244 4.244 14 H 0.071 0.929 15 C -0.012 4.012 16 N -0.931 5.931 17 Si 0.910 3.090 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.281 1.281 21 C -0.106 4.106 22 C -0.119 4.119 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.397 0.603 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.386 0.614 40 H 0.256 0.744 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.548 -7.879 22.135 23.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 C -0.167 4.167 4 C -0.128 4.128 5 C -0.083 4.083 6 C -0.199 4.199 7 C 0.309 3.691 8 O -0.414 6.414 9 N -0.374 5.374 10 C -0.012 4.012 11 C 0.017 3.983 12 N -0.375 5.375 13 C -0.375 4.375 14 H 0.089 0.911 15 C -0.208 4.208 16 N -0.579 5.579 17 Si 0.741 3.259 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.207 1.207 21 C -0.143 4.143 22 C -0.157 4.157 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.112 0.888 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.231 0.769 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.220 0.780 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.112 -7.242 22.049 23.303 hybrid contribution 0.325 -0.460 -1.069 1.208 sum 2.437 -7.702 20.980 22.481 Atomic orbital electron populations 1.21821 0.95435 1.01337 1.01878 1.21124 0.95409 0.96580 0.97725 1.21876 0.94994 0.96080 1.03760 1.21343 0.96394 1.00201 0.94874 1.20867 0.96690 0.96505 0.94255 1.21864 0.92690 1.02751 1.02622 1.20403 0.80006 0.84361 0.84329 1.90624 1.37756 1.26526 1.86478 1.45970 1.53541 1.32000 1.05864 1.21551 0.99514 0.96690 0.83491 1.20752 0.96657 0.94985 0.85926 1.42194 1.61603 1.33513 1.00150 1.19192 1.26208 1.08894 0.83232 0.91060 1.24774 1.00267 0.97790 0.97963 1.69671 1.38998 1.20653 1.28558 0.86153 0.77938 0.77650 0.84200 1.21623 1.21681 1.20704 1.21602 0.96213 0.93882 1.02635 1.21642 0.94878 1.00505 0.98660 0.92530 0.92981 0.92882 0.91734 0.92524 0.88777 0.91793 0.91432 0.91966 0.91511 0.91989 0.76875 0.91413 0.91450 0.95887 0.95889 0.78016 0.93365 0.91445 0.90906 0.91767 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.19 37.16 0.34 -1.05 16 2 C -0.09 -0.87 2.72 -90.62 -0.25 -1.12 16 3 C -0.13 -1.46 4.91 -26.73 -0.13 -1.59 16 4 C -0.09 -0.93 4.37 -26.73 -0.12 -1.05 16 5 C -0.08 -0.82 0.62 -155.66 -0.10 -0.92 16 6 C -0.14 -1.20 8.37 37.16 0.31 -0.89 16 7 C 0.52 7.35 4.96 -10.99 -0.05 7.30 16 8 O -0.54 -9.53 13.66 5.56 0.08 -9.45 16 9 N -0.72 -9.96 5.34 -60.29 -0.32 -10.28 16 10 C 0.11 1.94 5.79 -4.04 -0.02 1.91 16 11 C 0.15 2.86 6.37 -4.04 -0.03 2.84 16 12 N -0.73 -18.69 5.60 -59.91 -0.34 -19.03 16 13 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 14 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 15 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 16 N -0.93 -28.38 13.06 55.49 0.72 -27.66 16 17 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 C -0.11 -0.93 4.64 -26.73 -0.12 -1.05 16 22 C -0.12 -1.20 4.98 -26.74 -0.13 -1.33 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 1.36 5.51 -51.93 -0.29 1.07 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.48 7.56 -51.93 -0.39 0.09 16 34 H 0.40 4.46 7.31 -40.82 -0.30 4.16 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.39 10.48 7.67 -40.82 -0.31 10.17 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.07 0.55 7.56 -51.93 -0.39 0.16 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.81 7.22 -51.93 -0.37 0.44 16 LS Contribution 342.01 15.07 5.15 5.15 Total: -1.00 -31.87 342.01 -8.22 -40.09 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -7.94 Total: 8.25 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -0.55 Total: -4.39 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: 0.07 Total: -56.97 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.08 Total: -9.45 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.87 -8.22 -40.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152916923.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.105 kcal (2) G-P(sol) polarization free energy of solvation -31.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds