Wall clock time and date at job start Mon Mar 30 2020 01:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53005 * 109.47452 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46543 * 59.99968 * 4 3 2 6 6 C 1.53008 * 109.46896 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47589 * 60.00250 * 5 4 3 8 8 O 1.21282 * 119.99684 * 359.97438 * 7 5 4 9 9 N 1.34769 * 120.00466 * 179.97438 * 7 5 4 10 10 C 1.46500 * 120.00241 * 179.97438 * 9 7 5 11 11 C 1.53006 * 109.46998 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46998 * 180.02562 * 11 10 9 13 13 C 1.36931 * 120.00396 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99774 * 359.97438 * 13 12 11 15 15 C 1.38806 * 120.00545 * 180.02562 * 13 12 11 16 16 N 1.31622 * 119.99833 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00256 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47136 * 89.99695 * 17 15 13 19 19 H 1.48503 * 109.47098 * 209.99762 * 17 15 13 20 20 H 1.48496 * 109.47087 * 329.99418 * 17 15 13 21 21 C 1.53001 * 109.47628 * 300.00145 * 5 4 3 22 22 C 1.52995 * 109.47136 * 59.99753 * 21 5 4 23 23 H 1.08998 * 109.47624 * 59.99682 * 1 2 3 24 24 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47045 * 300.00058 * 1 2 3 26 26 H 1.09001 * 109.47375 * 119.99867 * 2 1 3 27 27 H 1.09002 * 109.47153 * 60.00008 * 3 2 1 28 28 H 1.09001 * 109.47289 * 299.99925 * 3 2 1 29 29 H 1.09001 * 109.46812 * 300.00216 * 4 3 2 30 30 H 1.08992 * 109.47061 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.47188 * 299.99992 * 6 5 4 32 32 H 1.09001 * 109.46630 * 60.00143 * 6 5 4 33 33 H 1.09002 * 109.47288 * 179.97438 * 6 5 4 34 34 H 0.97010 * 119.99849 * 0.02562 * 9 7 5 35 35 H 1.09000 * 109.47175 * 60.00333 * 10 9 7 36 36 H 1.09001 * 109.47297 * 299.99840 * 10 9 7 37 37 H 1.08993 * 109.46955 * 300.00226 * 11 10 9 38 38 H 1.09000 * 109.47050 * 60.00054 * 11 10 9 39 39 H 0.97010 * 119.99909 * 359.97438 * 12 11 10 40 40 H 0.97001 * 119.99731 * 180.02562 * 16 15 13 41 41 H 1.08992 * 109.47514 * 180.02562 * 21 5 4 42 42 H 1.09001 * 109.46652 * 300.00323 * 21 5 4 43 43 H 1.08999 * 109.47330 * 179.97438 * 22 21 5 44 44 H 1.09001 * 109.46885 * 60.00713 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0794 0.7215 -1.2502 6 6 5.6095 0.7220 -1.2513 7 6 3.5765 1.4320 -2.4804 8 8 2.8790 2.4179 -2.3687 9 7 3.9019 0.9721 -3.7047 10 6 3.4126 1.6625 -4.9005 11 6 3.9221 0.9414 -6.1501 12 7 3.4333 1.6322 -7.3460 13 6 3.7631 1.1644 -8.5899 14 1 4.3840 0.2863 -8.6894 15 6 3.3004 1.8192 -9.7230 16 7 2.5442 2.8896 -9.6017 17 14 3.7510 1.1813 -11.4199 18 1 2.7269 0.2043 -11.8695 19 1 3.8065 2.3158 -12.3765 20 1 5.0777 0.5167 -11.3627 21 6 3.5694 -0.7210 -1.2503 22 6 2.0394 -0.7211 -1.2495 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.9337 0.9285 0.8891 30 1 3.9333 2.4701 -0.0011 31 1 5.9724 1.7498 -1.2515 32 1 5.9735 0.2083 -0.3615 33 1 5.9724 0.2079 -2.1413 34 1 4.4596 0.1833 -3.7941 35 1 3.7752 2.6904 -4.9006 36 1 2.3226 1.6617 -4.9001 37 1 5.0120 0.9418 -6.1507 38 1 3.5591 -0.0864 -6.1499 39 1 2.8753 2.4207 -7.2566 40 1 2.2206 3.3470 -10.3936 41 1 3.9326 -1.2348 -2.1402 42 1 3.9332 -1.2350 -0.3605 43 1 1.6761 -1.7487 -1.2500 44 1 1.6757 -0.2071 -2.1393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152916923.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:53 Heat of formation + Delta-G solvation = -80.211149 kcal Electronic energy + Delta-G solvation = -21242.477015 eV Core-core repulsion = 18192.702302 eV Total energy + Delta-G solvation = -3049.774713 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.80688 -38.72636 -37.23638 -35.63143 -34.85117 -33.09916 -31.62155 -29.79535 -29.16239 -25.92852 -25.27357 -23.70847 -23.62717 -22.84542 -21.14212 -20.31735 -19.30198 -17.56158 -17.12556 -16.62280 -16.52257 -15.86763 -15.37101 -15.27453 -15.17517 -15.02626 -14.92484 -14.72703 -14.47553 -13.52967 -13.29875 -13.12021 -13.07767 -13.05164 -13.04098 -12.69643 -12.59077 -12.53395 -12.45375 -12.10657 -12.08832 -11.87267 -11.81079 -11.44437 -11.03215 -11.00054 -10.85933 -10.46963 -10.06486 -9.08483 -7.97971 -5.29824 1.47795 1.50386 1.58846 1.69781 2.14214 2.57617 3.36324 3.57517 3.65753 3.80462 3.94113 4.02537 4.12317 4.13304 4.19407 4.24963 4.38097 4.52077 4.55611 4.64144 4.66322 4.74372 4.81513 4.86239 4.96289 4.99621 5.01374 5.03093 5.10993 5.15693 5.17353 5.27479 5.30303 5.37553 5.40310 5.44161 5.45977 5.49229 5.73050 6.22525 6.58924 7.28619 7.31107 8.00055 8.23477 9.25808 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029986 B = 0.003540 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.552424 B = 7908.094997 C = 8174.305766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.131 4.131 4 C -0.090 4.090 5 C -0.072 4.072 6 C -0.140 4.140 7 C 0.518 3.482 8 O -0.580 6.580 9 N -0.712 5.712 10 C 0.130 3.870 11 C 0.150 3.850 12 N -0.748 5.748 13 C -0.250 4.250 14 H 0.083 0.917 15 C -0.076 4.076 16 N -0.971 5.971 17 Si 0.980 3.020 18 H -0.285 1.285 19 H -0.296 1.296 20 H -0.265 1.265 21 C -0.102 4.102 22 C -0.121 4.121 23 H 0.032 0.968 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.089 0.911 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.095 0.905 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.413 0.587 35 H 0.049 0.951 36 H 0.047 0.953 37 H 0.037 0.963 38 H 0.036 0.964 39 H 0.373 0.627 40 H 0.252 0.748 41 H 0.077 0.923 42 H 0.103 0.897 43 H 0.079 0.921 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.321 -10.581 23.576 26.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 C -0.168 4.168 4 C -0.128 4.128 5 C -0.076 4.076 6 C -0.197 4.197 7 C 0.306 3.694 8 O -0.459 6.459 9 N -0.365 5.365 10 C 0.005 3.995 11 C 0.024 3.976 12 N -0.391 5.391 13 C -0.381 4.381 14 H 0.101 0.899 15 C -0.268 4.268 16 N -0.622 5.622 17 Si 0.808 3.192 18 H -0.212 1.212 19 H -0.223 1.223 20 H -0.189 1.189 21 C -0.140 4.140 22 C -0.159 4.159 23 H 0.051 0.949 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.107 0.893 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.250 0.750 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.204 0.796 40 H 0.061 0.939 41 H 0.095 0.905 42 H 0.122 0.878 43 H 0.097 0.903 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 3.929 -10.004 23.525 25.864 hybrid contribution -0.257 0.391 -1.428 1.502 sum 3.671 -9.613 22.097 24.376 Atomic orbital electron populations 1.21829 0.95702 1.01891 1.01087 1.21128 0.95262 0.95527 0.98554 1.21823 0.95988 0.96986 1.02033 1.21383 0.95515 0.99762 0.96139 1.20915 0.98067 0.96958 0.91614 1.21896 0.90727 1.02617 1.04508 1.21300 0.78969 0.83885 0.85266 1.90623 1.39570 1.28657 1.87081 1.45804 1.53625 1.32280 1.04793 1.21083 0.98182 0.95924 0.84333 1.20836 0.97118 0.95022 0.84672 1.42440 1.61674 1.33552 1.01423 1.19661 1.25390 1.08802 0.84268 0.89868 1.25680 1.00813 0.98306 1.02031 1.69845 1.40768 1.22310 1.29249 0.85049 0.78273 0.76793 0.79066 1.21233 1.22278 1.18939 1.21659 0.94971 0.92724 1.04638 1.21657 0.96126 1.00817 0.97252 0.94898 0.91704 0.92146 0.89272 0.92028 0.92762 0.88633 0.93175 0.93168 0.88688 0.91077 0.75007 0.93246 0.93443 0.94487 0.94570 0.79550 0.93890 0.90452 0.87845 0.90280 0.95186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.19 71.98 0.66 -2.04 16 2 C -0.09 -1.53 2.72 -10.80 -0.03 -1.56 16 3 C -0.13 -2.89 4.91 30.60 0.15 -2.74 16 4 C -0.09 -1.71 4.37 30.59 0.13 -1.58 16 5 C -0.07 -1.34 0.62 -52.93 -0.03 -1.38 16 6 C -0.14 -1.93 8.37 71.98 0.60 -1.33 16 7 C 0.52 14.60 4.96 87.66 0.44 15.04 16 8 O -0.58 -21.67 13.66 -3.04 -0.04 -21.71 16 9 N -0.71 -19.35 5.34 -463.05 -2.47 -21.82 16 10 C 0.13 4.63 5.79 86.38 0.50 5.13 16 11 C 0.15 5.87 6.37 86.38 0.55 6.42 16 12 N -0.75 -38.75 5.60 -343.46 -1.92 -40.67 16 13 C -0.25 -13.96 9.99 84.03 0.84 -13.12 16 14 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 15 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 16 N -0.97 -60.52 13.06 21.65 0.28 -60.24 16 17 Si 0.98 45.92 29.55 68.60 2.03 47.95 16 18 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 19 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 20 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 21 C -0.10 -1.46 4.64 30.59 0.14 -1.32 16 22 C -0.12 -2.23 4.98 30.59 0.15 -2.07 16 23 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.05 1.66 5.51 -2.39 -0.01 1.65 16 29 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.86 7.56 -2.39 -0.02 0.84 16 34 H 0.41 8.50 7.31 -92.70 -0.68 7.83 16 35 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.37 20.97 7.67 -92.70 -0.71 20.26 16 40 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 41 H 0.08 0.98 7.56 -2.39 -0.02 0.96 16 42 H 0.10 0.94 8.14 -2.39 -0.02 0.93 16 43 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.03 0.75 7.22 -2.39 -0.02 0.74 16 Total: -1.00 -70.97 342.01 2.02 -68.94 By element: Atomic # 1 Polarization: 32.46 SS G_CDS: -0.42 Total: 32.04 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 4.57 Total: -4.49 kcal Atomic # 7 Polarization: -118.62 SS G_CDS: -4.11 Total: -122.73 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.04 Total: -21.71 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -70.97 2.02 -68.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152916923.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.268 kcal (2) G-P(sol) polarization free energy of solvation -70.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds