Wall clock time and date at job start Mon Mar 30 2020 01:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 115.56198 * 2 1 4 4 C 1.53079 * 117.51630 * 214.29259 * 2 1 3 5 5 C 1.52995 * 117.49236 * 145.03920 * 4 2 1 6 6 C 1.53005 * 117.52961 * 359.97438 * 4 2 1 7 7 C 1.53002 * 117.49498 * 145.68384 * 2 1 3 8 8 C 1.53007 * 117.49856 * 215.00358 * 7 2 1 9 9 C 1.50697 * 117.50334 * 0.02562 * 7 2 1 10 10 O 1.21280 * 120.00115 * 68.74014 * 9 7 2 11 11 N 1.34781 * 119.99883 * 248.74511 * 9 7 2 12 12 C 1.46501 * 119.99794 * 179.97438 * 11 9 7 13 13 C 1.53006 * 109.46875 * 180.02562 * 12 11 9 14 14 N 1.46501 * 109.46875 * 180.02562 * 13 12 11 15 15 C 1.36936 * 119.99588 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00457 * 0.02562 * 15 14 13 17 17 C 1.38817 * 119.99641 * 179.97438 * 15 14 13 18 18 N 1.31622 * 119.99560 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 120.00216 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47216 * 89.99742 * 19 17 15 21 21 H 1.48491 * 109.47284 * 209.99608 * 19 17 15 22 22 H 1.48503 * 109.47240 * 329.99937 * 19 17 15 23 23 H 1.09000 * 109.47707 * 284.26408 * 1 2 3 24 24 H 1.08999 * 109.46710 * 44.26803 * 1 2 3 25 25 H 1.09005 * 109.46956 * 164.25867 * 1 2 3 26 26 H 1.09000 * 109.47228 * 195.97953 * 3 2 1 27 27 H 1.08991 * 109.47114 * 315.97879 * 3 2 1 28 28 H 1.09008 * 109.47150 * 75.98394 * 3 2 1 29 29 H 1.09004 * 109.47169 * 121.54585 * 5 4 2 30 30 H 1.09001 * 109.47071 * 241.54146 * 5 4 2 31 31 H 1.08998 * 109.47129 * 1.54379 * 5 4 2 32 32 H 1.09001 * 109.46890 * 355.72836 * 6 4 2 33 33 H 1.08997 * 109.47086 * 115.72821 * 6 4 2 34 34 H 1.09000 * 109.46742 * 235.73028 * 6 4 2 35 35 H 1.09005 * 109.47034 * 231.25659 * 8 7 2 36 36 H 1.08996 * 109.47108 * 351.25743 * 8 7 2 37 37 H 1.08997 * 109.46711 * 111.25631 * 8 7 2 38 38 H 0.96995 * 119.99904 * 0.02562 * 11 9 7 39 39 H 1.08995 * 109.47044 * 299.99964 * 12 11 9 40 40 H 1.08997 * 109.47077 * 60.00050 * 12 11 9 41 41 H 1.08999 * 109.46765 * 300.00121 * 13 12 11 42 42 H 1.08999 * 109.47154 * 59.99556 * 13 12 11 43 43 H 0.97000 * 120.00107 * 359.97438 * 14 13 12 44 44 H 0.96996 * 119.99464 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3802 0.0000 4 6 2.2372 -1.1216 -0.7649 5 6 3.5499 -0.7764 -1.4708 6 6 1.3606 -2.1580 -1.4710 7 6 2.2363 -1.1210 0.7651 8 6 3.5486 -0.7758 1.4721 9 6 1.3719 -2.1409 1.4606 10 8 0.7125 -2.9225 0.8086 11 7 1.3316 -2.1842 2.8071 12 6 0.4908 -3.1754 3.4831 13 6 0.6257 -3.0102 4.9982 14 7 -0.2146 -4.0017 5.6742 15 6 -0.2554 -4.0458 7.0423 16 1 0.3314 -3.3495 7.6229 17 6 -1.0521 -4.9850 7.6829 18 7 -1.0910 -5.0277 8.9978 19 14 -2.0677 -6.1890 6.6788 20 1 -1.2680 -7.4123 6.4159 21 1 -3.2939 -6.5519 7.4334 22 1 -2.4484 -5.5599 5.3886 23 1 -0.3634 0.2532 0.9959 24 1 -0.3633 0.7359 -0.7173 25 1 -0.3633 -0.9892 -0.2788 26 1 3.2382 1.2817 -0.2829 27 1 1.6803 2.0268 -0.7141 28 1 2.1224 1.8154 0.9971 29 1 4.3468 -1.4145 -1.0886 30 1 3.4389 -0.9369 -2.5432 31 1 3.7994 0.2680 -1.2836 32 1 0.3125 -1.9623 -1.2444 33 1 1.5177 -2.0938 -2.5476 34 1 1.6271 -3.1563 -1.1237 35 1 4.3157 -1.4954 1.1859 36 1 3.8645 0.2265 1.1827 37 1 3.4004 -0.8125 2.5513 38 1 1.8586 -1.5588 3.3284 39 1 -0.5494 -3.0278 3.1931 40 1 0.8091 -4.1777 3.1967 41 1 1.6660 -3.1575 5.2885 42 1 0.3072 -2.0077 5.2842 43 1 -0.7419 -4.6269 5.1528 44 1 -1.6479 -5.6837 9.4454 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153804560.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:22 Heat of formation + Delta-G solvation = -1.385649 kcal Electronic energy + Delta-G solvation = -21194.813723 eV Core-core repulsion = 18148.457140 eV Total energy + Delta-G solvation = -3046.356582 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.07391 -38.21614 -35.78478 -34.01181 -31.64902 -31.29114 -30.70893 -29.25195 -27.91015 -26.24430 -25.89732 -23.76032 -21.77832 -21.44670 -19.02161 -18.01765 -17.67561 -16.41947 -16.00860 -15.60507 -15.23925 -14.53408 -14.47888 -14.44118 -13.91210 -13.73013 -13.44597 -13.23103 -12.77645 -12.66947 -12.60963 -12.51195 -12.19460 -12.06786 -11.93983 -11.85984 -11.71594 -11.52687 -11.49133 -10.93818 -10.85549 -10.61312 -10.17070 -9.87144 -9.70741 -9.63621 -9.22473 -9.00283 -8.84882 -7.31188 -5.80967 -3.18273 2.52830 3.17892 3.37709 3.41457 3.45308 3.51389 4.27786 4.39019 4.44950 4.56818 4.77651 4.84245 4.91221 5.15568 5.29222 5.35069 5.37856 5.44228 5.46802 5.48734 5.54651 5.58773 5.61274 5.64498 5.65872 5.70589 5.73125 5.78778 5.91177 5.95890 5.96755 6.05409 6.07682 6.18721 6.42222 6.56310 6.58771 6.66682 7.61603 7.92660 8.34010 8.37373 9.14930 9.87261 10.05774 11.36960 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033903 B = 0.003648 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.688179 B = 7673.287501 C = 7942.598662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.092 4.092 3 C -0.124 4.124 4 C -0.084 4.084 5 C -0.124 4.124 6 C -0.112 4.112 7 C -0.155 4.155 8 C -0.118 4.118 9 C 0.550 3.450 10 O -0.537 6.537 11 N -0.720 5.720 12 C 0.109 3.891 13 C 0.149 3.851 14 N -0.752 5.752 15 C -0.249 4.249 16 H 0.091 0.909 17 C 0.007 3.993 18 N -0.932 5.932 19 Si 0.885 3.115 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.276 1.276 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.399 0.601 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.033 0.967 42 H 0.032 0.968 43 H 0.363 0.637 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.449 12.916 -21.876 27.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.093 4.093 3 C -0.180 4.180 4 C -0.084 4.084 5 C -0.181 4.181 6 C -0.169 4.169 7 C -0.158 4.158 8 C -0.176 4.176 9 C 0.336 3.664 10 O -0.414 6.414 11 N -0.372 5.372 12 C -0.015 4.015 13 C 0.021 3.979 14 N -0.399 5.399 15 C -0.378 4.378 16 H 0.109 0.891 17 C -0.189 4.189 18 N -0.579 5.579 19 Si 0.715 3.285 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.202 1.202 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.234 0.766 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.196 0.804 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.005 12.387 -22.068 26.861 hybrid contribution -0.512 -0.675 -0.076 0.850 sum 8.493 11.712 -22.143 26.450 Atomic orbital electron populations 1.21560 0.91839 1.03436 1.02016 1.21753 0.95039 0.90501 1.01988 1.21500 1.00556 0.93722 1.02235 1.21754 0.97901 0.98771 0.90005 1.21540 0.94798 1.01792 0.99937 1.21540 0.99652 0.98183 0.97513 1.21799 0.98497 1.00528 0.94957 1.21393 0.94159 1.02211 0.99792 1.19425 0.81410 0.83641 0.81931 1.90681 1.44265 1.41635 1.64857 1.45913 1.47947 1.36990 1.06355 1.21574 0.94797 0.91890 0.93254 1.20728 0.95307 0.93739 0.88141 1.42534 1.53850 1.39136 1.04357 1.19013 1.23262 1.15130 0.80431 0.89101 1.24672 0.99800 0.99103 0.95339 1.69702 1.43519 1.38188 1.06535 0.86541 0.80401 0.81933 0.79656 1.20903 1.21565 1.20195 0.92219 0.91948 0.90370 0.91254 0.91767 0.91823 0.92021 0.91905 0.91409 0.90970 0.93578 0.91090 0.91665 0.91089 0.91909 0.76564 0.91484 0.91436 0.94956 0.95007 0.80395 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 8.65 37.16 0.32 -1.06 16 2 C -0.09 -0.88 2.70 -154.47 -0.42 -1.30 16 3 C -0.12 -0.88 8.21 37.16 0.31 -0.58 16 4 C -0.08 -0.84 2.70 -154.46 -0.42 -1.26 16 5 C -0.12 -0.95 8.85 37.15 0.33 -0.62 16 6 C -0.11 -1.29 7.99 37.16 0.30 -0.99 16 7 C -0.15 -1.65 2.61 -155.65 -0.41 -2.06 16 8 C -0.12 -0.99 8.62 37.16 0.32 -0.67 16 9 C 0.55 7.71 6.44 -10.99 -0.07 7.64 16 10 O -0.54 -9.11 12.43 5.56 0.07 -9.04 16 11 N -0.72 -9.78 5.45 -60.29 -0.33 -10.11 16 12 C 0.11 1.79 5.79 -4.04 -0.02 1.77 16 13 C 0.15 2.81 6.37 -4.04 -0.03 2.79 16 14 N -0.75 -18.08 5.41 -59.91 -0.32 -18.41 16 15 C -0.25 -7.08 10.47 -15.06 -0.16 -7.24 16 16 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 17 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 18 N -0.93 -29.33 13.97 55.49 0.78 -28.55 16 19 Si 0.88 22.33 27.74 -169.99 -4.71 17.62 16 20 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 22 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.08 0.96 4.53 -51.93 -0.23 0.73 16 26 H 0.07 0.42 4.34 -51.93 -0.23 0.20 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 29 H 0.06 0.46 7.67 -51.93 -0.40 0.07 16 30 H 0.06 0.44 7.78 -51.93 -0.40 0.04 16 31 H 0.07 0.43 5.11 -51.93 -0.27 0.17 16 32 H 0.07 0.91 4.61 -51.93 -0.24 0.67 16 33 H 0.05 0.44 7.79 -51.93 -0.40 0.04 16 34 H 0.07 0.96 6.96 -51.93 -0.36 0.59 16 35 H 0.06 0.53 7.78 -51.93 -0.40 0.13 16 36 H 0.07 0.48 5.78 -51.93 -0.30 0.18 16 37 H 0.06 0.50 6.39 -51.93 -0.33 0.16 16 38 H 0.40 4.49 6.78 -40.82 -0.28 4.21 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.36 8.59 5.53 -40.82 -0.23 8.37 16 44 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 333.19 15.07 5.02 5.02 Total: -1.00 -32.69 333.19 -6.59 -39.27 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -7.05 Total: 7.67 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -0.04 Total: -3.47 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 0.12 Total: -57.07 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.07 Total: -9.04 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.71 Total: 17.62 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.69 -6.59 -39.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153804560.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.889 kcal (2) G-P(sol) polarization free energy of solvation -32.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds