Wall clock time and date at job start Mon Mar 30 2020 01:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 115.56198 * 2 1 4 4 C 1.53079 * 117.51630 * 214.29259 * 2 1 3 5 5 C 1.52995 * 117.49236 * 145.03920 * 4 2 1 6 6 C 1.53005 * 117.52961 * 359.97438 * 4 2 1 7 7 C 1.53002 * 117.49498 * 145.68384 * 2 1 3 8 8 C 1.53007 * 117.49856 * 215.00358 * 7 2 1 9 9 C 1.50697 * 117.50334 * 0.02562 * 7 2 1 10 10 O 1.21280 * 120.00115 * 68.74014 * 9 7 2 11 11 N 1.34781 * 119.99883 * 248.74511 * 9 7 2 12 12 C 1.46501 * 119.99794 * 179.97438 * 11 9 7 13 13 C 1.53006 * 109.46875 * 180.02562 * 12 11 9 14 14 N 1.46501 * 109.46875 * 180.02562 * 13 12 11 15 15 C 1.36936 * 119.99588 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00457 * 0.02562 * 15 14 13 17 17 C 1.38817 * 119.99641 * 179.97438 * 15 14 13 18 18 N 1.31622 * 119.99560 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 120.00216 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47216 * 89.99742 * 19 17 15 21 21 H 1.48491 * 109.47284 * 209.99608 * 19 17 15 22 22 H 1.48503 * 109.47240 * 329.99937 * 19 17 15 23 23 H 1.09000 * 109.47707 * 284.26408 * 1 2 3 24 24 H 1.08999 * 109.46710 * 44.26803 * 1 2 3 25 25 H 1.09005 * 109.46956 * 164.25867 * 1 2 3 26 26 H 1.09000 * 109.47228 * 195.97953 * 3 2 1 27 27 H 1.08991 * 109.47114 * 315.97879 * 3 2 1 28 28 H 1.09008 * 109.47150 * 75.98394 * 3 2 1 29 29 H 1.09004 * 109.47169 * 121.54585 * 5 4 2 30 30 H 1.09001 * 109.47071 * 241.54146 * 5 4 2 31 31 H 1.08998 * 109.47129 * 1.54379 * 5 4 2 32 32 H 1.09001 * 109.46890 * 355.72836 * 6 4 2 33 33 H 1.08997 * 109.47086 * 115.72821 * 6 4 2 34 34 H 1.09000 * 109.46742 * 235.73028 * 6 4 2 35 35 H 1.09005 * 109.47034 * 231.25659 * 8 7 2 36 36 H 1.08996 * 109.47108 * 351.25743 * 8 7 2 37 37 H 1.08997 * 109.46711 * 111.25631 * 8 7 2 38 38 H 0.96995 * 119.99904 * 0.02562 * 11 9 7 39 39 H 1.08995 * 109.47044 * 299.99964 * 12 11 9 40 40 H 1.08997 * 109.47077 * 60.00050 * 12 11 9 41 41 H 1.08999 * 109.46765 * 300.00121 * 13 12 11 42 42 H 1.08999 * 109.47154 * 59.99556 * 13 12 11 43 43 H 0.97000 * 120.00107 * 359.97438 * 14 13 12 44 44 H 0.96996 * 119.99464 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3802 0.0000 4 6 2.2372 -1.1216 -0.7649 5 6 3.5499 -0.7764 -1.4708 6 6 1.3606 -2.1580 -1.4710 7 6 2.2363 -1.1210 0.7651 8 6 3.5486 -0.7758 1.4721 9 6 1.3719 -2.1409 1.4606 10 8 0.7125 -2.9225 0.8086 11 7 1.3316 -2.1842 2.8071 12 6 0.4908 -3.1754 3.4831 13 6 0.6257 -3.0102 4.9982 14 7 -0.2146 -4.0017 5.6742 15 6 -0.2554 -4.0458 7.0423 16 1 0.3314 -3.3495 7.6229 17 6 -1.0521 -4.9850 7.6829 18 7 -1.0910 -5.0277 8.9978 19 14 -2.0677 -6.1890 6.6788 20 1 -1.2680 -7.4123 6.4159 21 1 -3.2939 -6.5519 7.4334 22 1 -2.4484 -5.5599 5.3886 23 1 -0.3634 0.2532 0.9959 24 1 -0.3633 0.7359 -0.7173 25 1 -0.3633 -0.9892 -0.2788 26 1 3.2382 1.2817 -0.2829 27 1 1.6803 2.0268 -0.7141 28 1 2.1224 1.8154 0.9971 29 1 4.3468 -1.4145 -1.0886 30 1 3.4389 -0.9369 -2.5432 31 1 3.7994 0.2680 -1.2836 32 1 0.3125 -1.9623 -1.2444 33 1 1.5177 -2.0938 -2.5476 34 1 1.6271 -3.1563 -1.1237 35 1 4.3157 -1.4954 1.1859 36 1 3.8645 0.2265 1.1827 37 1 3.4004 -0.8125 2.5513 38 1 1.8586 -1.5588 3.3284 39 1 -0.5494 -3.0278 3.1931 40 1 0.8091 -4.1777 3.1967 41 1 1.6660 -3.1575 5.2885 42 1 0.3072 -2.0077 5.2842 43 1 -0.7419 -4.6269 5.1528 44 1 -1.6479 -5.6837 9.4454 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153804560.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:21 Heat of formation + Delta-G solvation = -23.484252 kcal Electronic energy + Delta-G solvation = -21195.771990 eV Core-core repulsion = 18148.457140 eV Total energy + Delta-G solvation = -3047.314850 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.97699 -39.27226 -37.38520 -35.59844 -33.55889 -32.00797 -31.75289 -30.11952 -29.28302 -26.95636 -26.65561 -25.50008 -23.36940 -22.74094 -20.21689 -19.63801 -18.75109 -17.42950 -17.13923 -16.78146 -16.42943 -16.16863 -15.71862 -15.46529 -15.25275 -14.94843 -14.66068 -14.50094 -14.12350 -13.51412 -13.48363 -13.38143 -13.20807 -13.18034 -12.85278 -12.74478 -12.71860 -12.61650 -12.60525 -12.54103 -12.47790 -12.11192 -11.84943 -11.33692 -11.06083 -10.81396 -10.49835 -10.15238 -10.07414 -9.39367 -8.07482 -5.43028 1.37248 1.38980 1.46213 1.49873 2.06065 2.44658 2.68195 3.24221 3.51135 3.56602 3.64721 3.77378 3.90811 4.02968 4.13440 4.16799 4.21328 4.46356 4.51691 4.67169 4.71780 4.75073 4.82276 4.88903 4.91543 4.94642 4.97528 5.02870 5.05588 5.06907 5.12597 5.16035 5.21210 5.32598 5.38345 5.41382 5.49206 5.69877 5.71962 6.15585 6.54275 7.00596 7.25233 7.74843 7.92923 9.13392 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033903 B = 0.003648 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.688179 B = 7673.287501 C = 7942.598662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 C -0.121 4.121 4 C -0.089 4.089 5 C -0.120 4.120 6 C -0.110 4.110 7 C -0.163 4.163 8 C -0.117 4.117 9 C 0.543 3.457 10 O -0.571 6.571 11 N -0.713 5.713 12 C 0.125 3.875 13 C 0.151 3.849 14 N -0.758 5.758 15 C -0.239 4.239 16 H 0.063 0.937 17 C -0.058 4.058 18 N -0.979 5.979 19 Si 0.952 3.048 20 H -0.277 1.277 21 H -0.292 1.292 22 H -0.256 1.256 23 H 0.051 0.949 24 H 0.079 0.921 25 H 0.054 0.946 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.044 0.956 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.412 0.588 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.041 0.959 42 H 0.039 0.961 43 H 0.366 0.634 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.511 14.316 -23.942 29.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.085 4.085 3 C -0.177 4.177 4 C -0.089 4.089 5 C -0.177 4.177 6 C -0.167 4.167 7 C -0.166 4.166 8 C -0.173 4.173 9 C 0.332 3.668 10 O -0.451 6.451 11 N -0.366 5.366 12 C 0.000 4.000 13 C 0.025 3.975 14 N -0.405 5.405 15 C -0.370 4.370 16 H 0.081 0.919 17 C -0.250 4.250 18 N -0.629 5.629 19 Si 0.779 3.221 20 H -0.203 1.203 21 H -0.218 1.218 22 H -0.180 1.180 23 H 0.070 0.930 24 H 0.097 0.903 25 H 0.073 0.927 26 H 0.103 0.897 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.250 0.750 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.199 0.801 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.104 13.830 -24.170 29.624 hybrid contribution -0.820 -1.053 0.554 1.445 sum 9.284 12.777 -23.616 28.411 Atomic orbital electron populations 1.21553 0.92940 1.02565 1.01943 1.21879 0.94375 0.91588 1.00655 1.21542 1.01274 0.91901 1.03007 1.21877 0.98929 0.98544 0.89560 1.21560 0.93199 1.02938 0.99984 1.21460 0.99167 0.97388 0.98684 1.21842 0.99173 1.00317 0.95294 1.21444 0.92697 1.03490 0.99710 1.20103 0.81221 0.83822 0.81692 1.90673 1.45759 1.43162 1.65496 1.45794 1.47654 1.36619 1.06532 1.21183 0.94823 0.92327 0.91622 1.20814 0.94714 0.92681 0.89320 1.42552 1.54671 1.40327 1.02938 1.19012 1.21874 1.13839 0.82286 0.91853 1.25478 1.01673 1.01486 0.96400 1.69867 1.45029 1.39517 1.08518 0.85452 0.78401 0.79485 0.78732 1.20299 1.21839 1.18040 0.93003 0.90254 0.92687 0.89709 0.90758 0.91251 0.91825 0.91286 0.89550 0.92532 0.91973 0.93691 0.91507 0.88894 0.91625 0.75041 0.92460 0.92290 0.94136 0.94289 0.80064 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 8.65 71.98 0.62 -2.04 16 2 C -0.08 -1.43 2.70 -52.16 -0.14 -1.57 16 3 C -0.12 -1.28 8.21 71.98 0.59 -0.69 16 4 C -0.09 -1.62 2.70 -52.15 -0.14 -1.76 16 5 C -0.12 -1.48 8.85 71.98 0.64 -0.84 16 6 C -0.11 -2.51 7.99 71.98 0.58 -1.94 16 7 C -0.16 -3.20 2.61 -52.92 -0.14 -3.34 16 8 C -0.12 -1.61 8.62 71.98 0.62 -0.99 16 9 C 0.54 14.93 6.44 87.66 0.56 15.49 16 10 O -0.57 -19.68 12.43 -3.03 -0.04 -19.71 16 11 N -0.71 -18.63 5.45 -463.06 -2.53 -21.15 16 12 C 0.13 4.03 5.79 86.38 0.50 4.53 16 13 C 0.15 5.57 6.37 86.38 0.55 6.13 16 14 N -0.76 -35.86 5.41 -343.44 -1.86 -37.72 16 15 C -0.24 -13.71 10.47 84.03 0.88 -12.83 16 16 H 0.06 3.91 8.06 -2.91 -0.02 3.88 16 17 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 18 N -0.98 -62.75 13.97 21.65 0.30 -62.45 16 19 Si 0.95 46.07 27.74 68.60 1.90 47.97 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 21 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 22 H -0.26 -11.37 6.52 99.48 0.65 -10.73 16 23 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.05 1.37 4.53 -2.38 -0.01 1.36 16 26 H 0.08 0.64 4.34 -2.39 -0.01 0.63 16 27 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.06 0.77 7.67 -2.38 -0.02 0.76 16 30 H 0.07 0.77 7.78 -2.39 -0.02 0.76 16 31 H 0.09 0.73 5.11 -2.39 -0.01 0.72 16 32 H 0.06 1.46 4.61 -2.39 -0.01 1.45 16 33 H 0.06 1.15 7.79 -2.39 -0.02 1.13 16 34 H 0.04 1.24 6.96 -2.39 -0.02 1.22 16 35 H 0.07 0.91 7.78 -2.38 -0.02 0.90 16 36 H 0.09 0.88 5.78 -2.39 -0.01 0.87 16 37 H 0.06 0.86 6.39 -2.39 -0.02 0.85 16 38 H 0.41 8.57 6.78 -92.71 -0.63 7.94 16 39 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.37 16.81 5.53 -92.71 -0.51 16.29 16 44 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -71.40 333.19 3.18 -68.22 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: -0.19 Total: 27.68 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 5.59 Total: -2.84 kcal Atomic # 7 Polarization: -117.24 SS G_CDS: -4.08 Total: -121.32 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.04 Total: -19.71 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.90 Total: 47.97 kcal Total: -71.40 3.18 -68.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153804560.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.736 kcal (2) G-P(sol) polarization free energy of solvation -71.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds