Wall clock time and date at job start Mon Mar 30 2020 01:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00474 * 2 1 4 4 H 1.48496 * 109.46983 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46945 * 300.00454 * 3 2 1 6 6 H 1.48503 * 109.46686 * 60.00347 * 3 2 1 7 7 C 1.38816 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00335 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99768 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00044 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47414 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47287 * 179.97438 * 11 10 9 13 13 N 1.46503 * 109.47236 * 179.97438 * 12 11 10 14 14 C 1.34772 * 119.99766 * 179.97438 * 13 12 11 15 15 O 1.21273 * 120.00418 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99745 * 180.02562 * 14 13 12 17 17 C 1.53003 * 109.47328 * 180.02562 * 16 14 13 18 18 C 1.52994 * 109.47126 * 180.02562 * 17 16 14 19 19 C 1.54961 * 110.92578 * 71.54077 * 18 17 16 20 20 C 1.54270 * 104.16191 * 156.29427 * 19 18 17 21 21 C 1.53869 * 106.63967 * 336.44607 * 20 19 18 22 22 C 1.54268 * 106.60115 * 359.97438 * 21 20 19 23 23 H 0.97001 * 119.99653 * 359.97438 * 1 2 3 24 24 H 0.97005 * 120.00601 * 0.02562 * 9 7 2 25 25 H 1.08995 * 109.46823 * 60.00101 * 10 9 7 26 26 H 1.09000 * 109.47226 * 300.00106 * 10 9 7 27 27 H 1.08999 * 109.46784 * 59.99891 * 11 10 9 28 28 H 1.09000 * 109.46864 * 300.00148 * 11 10 9 29 29 H 1.09006 * 109.46951 * 60.00442 * 12 11 10 30 30 H 1.09005 * 109.47389 * 300.00372 * 12 11 10 31 31 H 0.96999 * 119.99857 * 0.02562 * 13 12 11 32 32 H 1.09001 * 109.47076 * 60.00853 * 16 14 13 33 33 H 1.09000 * 109.47029 * 300.00405 * 16 14 13 34 34 H 1.08995 * 109.46922 * 60.00027 * 17 16 14 35 35 H 1.09000 * 109.47141 * 300.00024 * 17 16 14 36 36 H 1.09001 * 110.67554 * 308.23161 * 18 17 16 37 37 H 1.08997 * 110.47708 * 37.64024 * 19 18 17 38 38 H 1.09002 * 110.53308 * 274.97416 * 19 18 17 39 39 H 1.09002 * 110.03399 * 217.13605 * 20 19 18 40 40 H 1.08995 * 110.02943 * 95.75505 * 20 19 18 41 41 H 1.08999 * 110.03405 * 119.26051 * 21 20 19 42 42 H 1.09001 * 110.03705 * 240.64196 * 21 20 19 43 43 H 1.08997 * 110.48788 * 142.28685 * 22 21 20 44 44 H 1.09000 * 110.48806 * 264.79985 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8917 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0578 -3.6569 -0.0017 11 6 1.0636 -4.8198 -0.0021 12 6 1.8284 -6.1448 -0.0039 13 7 0.8764 -7.2583 -0.0037 14 6 1.3256 -8.5289 -0.0056 15 8 2.5179 -8.7506 -0.0071 16 6 0.3462 -9.6743 -0.0060 17 6 1.1111 -10.9994 -0.0077 18 6 0.1168 -12.1622 -0.0086 19 6 -0.5916 -12.2835 -1.3815 20 6 -1.0442 -13.7570 -1.4438 21 6 -0.1241 -14.5412 -0.4920 22 6 0.8568 -13.5173 0.1159 23 1 -0.4850 0.8401 0.0004 24 1 0.3554 -2.3881 -0.0005 25 1 2.6851 -3.7150 0.8878 26 1 2.6838 -3.7143 -0.8921 27 1 0.4366 -4.7613 -0.8918 28 1 0.4373 -4.7625 0.8882 29 1 2.4557 -6.2034 0.8857 30 1 2.4545 -6.2017 -0.8944 31 1 -0.0773 -7.0810 -0.0028 32 1 -0.2813 -9.6156 -0.8953 33 1 -0.2796 -9.6175 0.8847 34 1 1.7383 -11.0580 0.8818 35 1 1.7372 -11.0564 -0.8981 36 1 -0.6127 -12.0455 0.7928 37 1 0.1048 -12.0638 -2.1907 38 1 -1.4533 -11.6175 -1.4272 39 1 -0.9407 -14.1367 -2.4603 40 1 -2.0804 -13.8434 -1.1170 41 1 -0.7137 -15.0075 0.2974 42 1 0.4253 -15.3021 -1.0462 43 1 1.0518 -13.7507 1.1626 44 1 1.7883 -13.4990 -0.4499 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154273884.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:31 Heat of formation + Delta-G solvation = -68.985431 kcal Electronic energy + Delta-G solvation = -19479.517686 eV Core-core repulsion = 16430.229757 eV Total energy + Delta-G solvation = -3049.287929 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.84336 -38.53969 -36.05243 -34.32669 -33.45583 -31.95316 -29.78308 -29.05314 -28.25829 -25.34042 -23.59039 -22.33064 -21.20488 -20.67937 -20.25243 -19.96544 -17.26348 -16.75856 -16.34674 -15.93140 -15.79443 -15.11616 -14.95952 -14.55928 -13.96844 -13.77231 -13.57434 -13.30438 -13.18698 -12.97036 -12.48956 -12.20620 -11.70994 -11.63848 -11.47546 -11.39979 -11.09713 -10.95773 -10.93060 -10.87371 -10.77858 -10.75744 -10.69012 -10.62228 -10.06481 -9.82827 -9.67794 -9.02385 -8.88966 -6.93950 -5.77975 -3.06797 2.64097 3.19101 3.43274 3.49041 3.51370 4.21007 4.29006 4.37936 4.58730 4.68491 4.78900 4.89516 5.10161 5.12920 5.17960 5.23048 5.31068 5.31464 5.31918 5.38996 5.45601 5.56693 5.57374 5.63037 5.63919 5.74971 5.82287 5.87570 5.97025 6.00557 6.05404 6.07325 6.17916 6.19540 6.31930 6.49034 6.78845 6.83090 7.50467 7.70294 8.22613 8.41074 9.52240 10.09383 10.44120 11.45130 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.065673 B = 0.002119 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.249347 B =13211.836639 C =13487.420215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.072 0.928 9 N -0.734 5.734 10 C 0.156 3.844 11 C -0.137 4.137 12 C 0.121 3.879 13 N -0.730 5.730 14 C 0.508 3.492 15 O -0.545 6.545 16 C -0.141 4.141 17 C -0.095 4.095 18 C -0.094 4.094 19 C -0.122 4.122 20 C -0.126 4.126 21 C -0.126 4.126 22 C -0.121 4.121 23 H 0.255 0.745 24 H 0.383 0.617 25 H 0.022 0.978 26 H 0.021 0.979 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.400 0.600 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.684 -28.262 -0.805 28.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.370 4.370 8 H 0.090 0.910 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.175 4.175 12 C -0.002 4.002 13 N -0.381 5.381 14 C 0.294 3.706 15 O -0.422 6.422 16 C -0.181 4.181 17 C -0.133 4.133 18 C -0.112 4.112 19 C -0.160 4.160 20 C -0.164 4.164 21 C -0.163 4.163 22 C -0.158 4.158 23 H 0.064 0.936 24 H 0.217 0.783 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.234 0.766 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.664 -28.296 -0.810 28.432 hybrid contribution -0.436 1.122 -0.007 1.204 sum -3.100 -27.174 -0.817 27.362 Atomic orbital electron populations 1.69673 1.05135 1.25563 1.57957 1.24764 0.95577 0.97785 1.03039 0.86086 0.78810 0.83953 0.77181 1.20503 1.21843 1.21837 1.19303 0.91155 0.84119 1.42467 0.91018 1.42350 1.05868 1.00007 1.89594 1.20526 0.93294 0.85206 0.98203 1.21939 0.99552 0.93382 1.02669 1.21348 0.91815 0.84716 1.02351 1.46139 1.10680 1.05958 1.75366 1.20755 0.89879 0.84068 0.75875 1.90698 1.17129 1.84872 1.49544 1.21710 0.98441 0.93590 1.04337 1.21329 0.97143 0.91218 1.03620 1.22200 0.97123 0.94298 0.97617 1.22487 1.00057 0.96146 0.97307 1.22133 0.99267 0.95456 0.99516 1.22130 0.97534 0.98007 0.98662 1.22407 0.98436 0.94197 1.00805 0.93561 0.78311 0.96048 0.96065 0.91334 0.91325 0.91468 0.91463 0.76558 0.88941 0.89008 0.91139 0.91098 0.90579 0.91434 0.91654 0.92037 0.92014 0.92042 0.92043 0.91737 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 1.99 7.83 -52.49 -0.41 1.57 16 9 N -0.73 -18.81 5.60 -59.91 -0.34 -19.15 16 10 C 0.16 3.14 6.26 -4.04 -0.03 3.12 16 11 C -0.14 -2.11 5.44 -26.73 -0.15 -2.26 16 12 C 0.12 1.68 5.67 -4.04 -0.02 1.66 16 13 N -0.73 -8.36 5.56 -60.29 -0.33 -8.69 16 14 C 0.51 6.20 7.83 -10.99 -0.09 6.12 16 15 O -0.55 -8.92 15.98 5.56 0.09 -8.84 16 16 C -0.14 -1.14 5.59 -27.88 -0.16 -1.30 16 17 C -0.10 -0.81 4.01 -26.73 -0.11 -0.92 16 18 C -0.09 -0.64 2.86 -88.59 -0.25 -0.89 16 19 C -0.12 -0.79 5.71 -25.03 -0.14 -0.93 16 20 C -0.13 -0.76 6.80 -25.61 -0.17 -0.93 16 21 C -0.13 -0.76 6.80 -25.62 -0.17 -0.94 16 22 C -0.12 -0.81 6.27 -25.07 -0.16 -0.97 16 23 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.38 10.19 7.67 -40.82 -0.31 9.88 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.40 3.52 8.47 -40.82 -0.35 3.18 16 32 H 0.09 0.61 7.66 -51.93 -0.40 0.21 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.07 0.69 7.96 -51.93 -0.41 0.28 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.47 7.95 -51.93 -0.41 0.05 16 38 H 0.06 0.38 8.10 -51.93 -0.42 -0.04 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.48 8.05 -51.93 -0.42 0.06 16 LS Contribution 355.76 15.07 5.36 5.36 Total: -1.00 -32.96 355.76 -9.39 -42.35 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -8.18 Total: 4.84 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -1.69 Total: -5.76 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 0.05 Total: -55.53 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.96 -9.39 -42.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154273884.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.632 kcal (2) G-P(sol) polarization free energy of solvation -32.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds