Wall clock time and date at job start Mon Mar 30 2020 01:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00474 * 2 1 4 4 H 1.48496 * 109.46983 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46945 * 300.00454 * 3 2 1 6 6 H 1.48503 * 109.46686 * 60.00347 * 3 2 1 7 7 C 1.38816 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00335 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99768 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00044 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47414 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47287 * 179.97438 * 11 10 9 13 13 N 1.46503 * 109.47236 * 179.97438 * 12 11 10 14 14 C 1.34772 * 119.99766 * 179.97438 * 13 12 11 15 15 O 1.21273 * 120.00418 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99745 * 180.02562 * 14 13 12 17 17 C 1.53003 * 109.47328 * 180.02562 * 16 14 13 18 18 C 1.52994 * 109.47126 * 180.02562 * 17 16 14 19 19 C 1.54961 * 110.92578 * 71.54077 * 18 17 16 20 20 C 1.54270 * 104.16191 * 156.29427 * 19 18 17 21 21 C 1.53869 * 106.63967 * 336.44607 * 20 19 18 22 22 C 1.54268 * 106.60115 * 359.97438 * 21 20 19 23 23 H 0.97001 * 119.99653 * 359.97438 * 1 2 3 24 24 H 0.97005 * 120.00601 * 0.02562 * 9 7 2 25 25 H 1.08995 * 109.46823 * 60.00101 * 10 9 7 26 26 H 1.09000 * 109.47226 * 300.00106 * 10 9 7 27 27 H 1.08999 * 109.46784 * 59.99891 * 11 10 9 28 28 H 1.09000 * 109.46864 * 300.00148 * 11 10 9 29 29 H 1.09006 * 109.46951 * 60.00442 * 12 11 10 30 30 H 1.09005 * 109.47389 * 300.00372 * 12 11 10 31 31 H 0.96999 * 119.99857 * 0.02562 * 13 12 11 32 32 H 1.09001 * 109.47076 * 60.00853 * 16 14 13 33 33 H 1.09000 * 109.47029 * 300.00405 * 16 14 13 34 34 H 1.08995 * 109.46922 * 60.00027 * 17 16 14 35 35 H 1.09000 * 109.47141 * 300.00024 * 17 16 14 36 36 H 1.09001 * 110.67554 * 308.23161 * 18 17 16 37 37 H 1.08997 * 110.47708 * 37.64024 * 19 18 17 38 38 H 1.09002 * 110.53308 * 274.97416 * 19 18 17 39 39 H 1.09002 * 110.03399 * 217.13605 * 20 19 18 40 40 H 1.08995 * 110.02943 * 95.75505 * 20 19 18 41 41 H 1.08999 * 110.03405 * 119.26051 * 21 20 19 42 42 H 1.09001 * 110.03705 * 240.64196 * 21 20 19 43 43 H 1.08997 * 110.48788 * 142.28685 * 22 21 20 44 44 H 1.09000 * 110.48806 * 264.79985 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8917 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0578 -3.6569 -0.0017 11 6 1.0636 -4.8198 -0.0021 12 6 1.8284 -6.1448 -0.0039 13 7 0.8764 -7.2583 -0.0037 14 6 1.3256 -8.5289 -0.0056 15 8 2.5179 -8.7506 -0.0071 16 6 0.3462 -9.6743 -0.0060 17 6 1.1111 -10.9994 -0.0077 18 6 0.1168 -12.1622 -0.0086 19 6 -0.5916 -12.2835 -1.3815 20 6 -1.0442 -13.7570 -1.4438 21 6 -0.1241 -14.5412 -0.4920 22 6 0.8568 -13.5173 0.1159 23 1 -0.4850 0.8401 0.0004 24 1 0.3554 -2.3881 -0.0005 25 1 2.6851 -3.7150 0.8878 26 1 2.6838 -3.7143 -0.8921 27 1 0.4366 -4.7613 -0.8918 28 1 0.4373 -4.7625 0.8882 29 1 2.4557 -6.2034 0.8857 30 1 2.4545 -6.2017 -0.8944 31 1 -0.0773 -7.0810 -0.0028 32 1 -0.2813 -9.6156 -0.8953 33 1 -0.2796 -9.6175 0.8847 34 1 1.7383 -11.0580 0.8818 35 1 1.7372 -11.0564 -0.8981 36 1 -0.6127 -12.0455 0.7928 37 1 0.1048 -12.0638 -2.1907 38 1 -1.4533 -11.6175 -1.4272 39 1 -0.9407 -14.1367 -2.4603 40 1 -2.0804 -13.8434 -1.1170 41 1 -0.7137 -15.0075 0.2974 42 1 0.4253 -15.3021 -1.0462 43 1 1.0518 -13.7507 1.1626 44 1 1.7883 -13.4990 -0.4499 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154273884.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:30 Heat of formation + Delta-G solvation = -89.951911 kcal Electronic energy + Delta-G solvation = -19480.426860 eV Core-core repulsion = 16430.229757 eV Total energy + Delta-G solvation = -3050.197104 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.80816 -39.12653 -37.52223 -35.89534 -34.19220 -33.67143 -31.36716 -29.58532 -29.03447 -26.89949 -24.85595 -23.65231 -22.57874 -21.36165 -20.95134 -20.67650 -19.18591 -17.85555 -17.19612 -17.01888 -16.66370 -16.39875 -16.03141 -15.68818 -15.31127 -15.08599 -14.81763 -14.40110 -14.16665 -14.02275 -13.61272 -13.31574 -12.96206 -12.84369 -12.58832 -12.42732 -12.23617 -12.07042 -12.04657 -12.03851 -11.88357 -11.80305 -11.69605 -11.40640 -11.28099 -11.21350 -10.96886 -10.82414 -10.08133 -9.03191 -7.97933 -5.27149 1.47406 1.48030 1.58501 1.68543 2.23153 2.55742 3.35981 3.67520 3.71256 3.76765 3.84981 3.95270 4.07354 4.20665 4.27643 4.30481 4.45633 4.59886 4.65330 4.69339 4.70835 4.72530 4.75498 4.78746 4.85449 4.88561 4.94132 5.03762 5.14979 5.21296 5.27078 5.28539 5.30633 5.32325 5.40688 5.47000 5.48263 5.55631 5.62097 6.25103 6.60090 7.29748 7.31462 8.05852 8.30036 9.25731 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.065673 B = 0.002119 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.249347 B =13211.836639 C =13487.420215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.076 4.076 3 Si 0.976 3.024 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.250 4.250 8 H 0.075 0.925 9 N -0.747 5.747 10 C 0.151 3.849 11 C -0.117 4.117 12 C 0.132 3.868 13 N -0.720 5.720 14 C 0.504 3.496 15 O -0.592 6.592 16 C -0.131 4.131 17 C -0.091 4.091 18 C -0.088 4.088 19 C -0.123 4.123 20 C -0.127 4.127 21 C -0.126 4.126 22 C -0.125 4.125 23 H 0.253 0.747 24 H 0.376 0.624 25 H 0.021 0.979 26 H 0.021 0.979 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.416 0.584 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.496 -28.988 -0.731 29.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.804 3.196 4 H -0.192 1.192 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.382 4.382 8 H 0.093 0.907 9 N -0.390 5.390 10 C 0.024 3.976 11 C -0.155 4.155 12 C 0.007 3.993 13 N -0.373 5.373 14 C 0.292 3.708 15 O -0.473 6.473 16 C -0.170 4.170 17 C -0.130 4.130 18 C -0.106 4.106 19 C -0.160 4.160 20 C -0.164 4.164 21 C -0.163 4.163 22 C -0.162 4.162 23 H 0.061 0.939 24 H 0.208 0.792 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.253 0.747 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.484 -29.051 -0.737 29.268 hybrid contribution -0.140 1.284 -0.031 1.292 sum -3.624 -27.767 -0.768 28.013 Atomic orbital electron populations 1.69814 1.06544 1.26147 1.59358 1.25602 0.96514 1.01185 1.03509 0.85042 0.78151 0.79575 0.76793 1.19192 1.21832 1.21817 1.19691 0.91576 0.85437 1.41454 0.90737 1.42546 1.05743 1.01144 1.89529 1.20689 0.94152 0.84855 0.97900 1.21690 0.98418 0.92159 1.03262 1.21054 0.91886 0.84780 1.01575 1.46016 1.11189 1.05254 1.74816 1.21509 0.89915 0.84845 0.74499 1.90683 1.19402 1.85504 1.51706 1.21743 0.97583 0.91122 1.06595 1.21263 0.97306 0.92414 1.01977 1.22154 0.96784 0.93346 0.98339 1.22495 1.00190 0.96723 0.96616 1.22149 0.99597 0.95108 0.99584 1.22138 0.97448 0.97855 0.98879 1.22433 0.98306 0.94635 1.00871 0.93867 0.79198 0.96092 0.96120 0.90720 0.90696 0.92332 0.92349 0.74684 0.86651 0.86434 0.92747 0.92926 0.89443 0.92269 0.90533 0.91961 0.91280 0.91416 0.91983 0.91542 0.92411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.07 13.06 21.65 0.28 -58.79 16 2 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 3 Si 0.98 46.30 29.55 68.60 2.03 48.33 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 6 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 7 C -0.25 -14.16 9.99 84.03 0.84 -13.32 16 8 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 9 N -0.75 -38.16 5.60 -343.46 -1.92 -40.08 16 10 C 0.15 6.01 6.26 86.38 0.54 6.55 16 11 C -0.12 -3.46 5.44 30.59 0.17 -3.29 16 12 C 0.13 3.52 5.67 86.38 0.49 4.01 16 13 N -0.72 -15.21 5.56 -463.06 -2.57 -17.78 16 14 C 0.50 11.68 7.83 87.66 0.69 12.36 16 15 O -0.59 -19.44 15.98 -3.01 -0.05 -19.49 16 16 C -0.13 -1.82 5.59 29.85 0.17 -1.66 16 17 C -0.09 -1.48 4.01 30.59 0.12 -1.36 16 18 C -0.09 -1.05 2.86 -9.48 -0.03 -1.07 16 19 C -0.12 -1.34 5.71 31.70 0.18 -1.16 16 20 C -0.13 -1.30 6.80 31.32 0.21 -1.09 16 21 C -0.13 -1.35 6.80 31.32 0.21 -1.14 16 22 C -0.12 -1.57 6.27 31.67 0.20 -1.37 16 23 H 0.25 14.84 8.31 -92.71 -0.77 14.06 16 24 H 0.38 20.02 7.67 -92.70 -0.71 19.31 16 25 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.02 0.83 8.14 -2.39 -0.02 0.82 16 27 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.42 6.19 8.47 -92.71 -0.79 5.41 16 32 H 0.12 1.14 7.66 -2.39 -0.02 1.12 16 33 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 35 H 0.05 1.04 7.96 -2.39 -0.02 1.02 16 36 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.06 0.75 7.95 -2.39 -0.02 0.73 16 38 H 0.08 0.67 8.10 -2.39 -0.02 0.65 16 39 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.07 0.64 8.14 -2.39 -0.02 0.63 16 42 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.06 0.83 8.05 -2.39 -0.02 0.81 16 Total: -1.00 -70.50 355.76 1.49 -69.01 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: -0.54 Total: 25.25 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: 4.26 Total: -6.45 kcal Atomic # 7 Polarization: -112.44 SS G_CDS: -4.21 Total: -116.65 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.05 Total: -19.49 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -70.50 1.49 -69.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154273884.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.943 kcal (2) G-P(sol) polarization free energy of solvation -70.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds