Wall clock time and date at job start Mon Mar 30 2020 01:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99807 * 2 1 4 4 H 1.48501 * 109.47093 * 269.99665 * 3 2 1 5 5 H 1.48493 * 109.47334 * 29.99727 * 3 2 1 6 6 H 1.48507 * 109.47240 * 150.00098 * 3 2 1 7 7 C 1.38815 * 120.00271 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99634 * 0.02562 * 7 2 1 9 9 N 1.36933 * 120.00106 * 179.97438 * 7 2 1 10 10 C 1.46500 * 119.99928 * 180.02562 * 9 7 2 11 11 C 1.53009 * 109.46974 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46870 * 180.02562 * 11 10 9 13 13 N 1.46501 * 109.46932 * 180.02562 * 12 11 10 14 14 C 1.34771 * 119.99915 * 180.02562 * 13 12 11 15 15 O 1.21278 * 120.00224 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00023 * 180.02562 * 14 13 12 17 17 C 1.53002 * 109.47344 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.46817 * 64.99877 * 17 16 14 19 19 C 1.52999 * 109.47317 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 17 21 21 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 22 22 C 1.53000 * 109.47233 * 184.99683 * 17 16 14 23 23 H 0.97001 * 119.99879 * 0.02562 * 1 2 3 24 24 H 0.96999 * 119.99960 * 0.02562 * 9 7 2 25 25 H 1.08999 * 109.47229 * 60.00372 * 10 9 7 26 26 H 1.08997 * 109.47028 * 299.99774 * 10 9 7 27 27 H 1.08999 * 109.46970 * 60.00053 * 11 10 9 28 28 H 1.08997 * 109.46927 * 299.99675 * 11 10 9 29 29 H 1.08995 * 109.46928 * 60.00012 * 12 11 10 30 30 H 1.08997 * 109.47011 * 300.00082 * 12 11 10 31 31 H 0.97002 * 119.99602 * 359.97438 * 13 12 11 32 32 H 1.09008 * 109.47224 * 59.99699 * 16 14 13 33 33 H 1.08997 * 109.47214 * 299.99692 * 16 14 13 34 34 H 1.09002 * 109.47070 * 305.00057 * 17 16 14 35 35 H 1.08996 * 109.47853 * 300.00202 * 18 17 16 36 36 H 1.09002 * 109.47153 * 60.00231 * 18 17 16 37 37 H 1.09000 * 109.47486 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.46716 * 60.00091 * 19 18 17 39 39 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 40 40 H 1.09001 * 109.46812 * 179.97438 * 20 19 18 41 41 H 1.08993 * 109.47194 * 179.97438 * 21 20 19 42 42 H 1.09002 * 109.46695 * 59.99734 * 21 20 19 43 43 H 1.08992 * 109.47399 * 300.00166 * 22 17 16 44 44 H 1.09004 * 109.46724 * 60.00652 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 6 5.6165 -2.1912 0.0000 12 6 6.3815 -3.5162 -0.0006 13 7 7.8218 -3.2485 0.0000 14 6 8.6976 -4.2728 -0.0010 15 8 8.2934 -5.4163 -0.0018 16 6 10.1792 -3.9974 0.0003 17 6 10.9443 -5.3224 -0.0005 18 6 10.6722 -6.0676 -1.3087 19 6 11.4377 -7.3923 -1.3099 20 6 12.9370 -7.1150 -1.1832 21 6 13.2092 -6.3699 0.1251 22 6 12.4437 -5.0457 0.1264 23 1 -0.4850 0.8401 -0.0004 24 1 3.8646 -0.3620 -0.0004 25 1 3.8486 -3.0426 -0.8898 26 1 3.8492 -3.0422 0.8902 27 1 5.8798 -1.6196 0.8900 28 1 5.8798 -1.6196 -0.8900 29 1 6.1181 -4.0873 -0.8908 30 1 6.1182 -4.0881 0.8891 31 1 8.1451 -2.3339 0.0003 32 1 10.4421 -3.4270 0.8912 33 1 10.4430 -3.4247 -0.8888 34 1 10.6150 -5.9326 0.8405 35 1 9.6040 -6.2648 -1.3993 36 1 11.0015 -5.4574 -2.1498 37 1 11.2442 -7.9230 -2.2421 38 1 11.1087 -8.0027 -0.4688 39 1 13.2660 -6.5047 -2.0242 40 1 13.4823 -8.0589 -1.1835 41 1 14.2773 -6.1728 0.2155 42 1 12.8802 -6.9803 0.9660 43 1 12.7730 -4.4355 -0.7146 44 1 12.6375 -4.5148 1.0585 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154407646.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:56 Heat of formation + Delta-G solvation = -65.446750 kcal Electronic energy + Delta-G solvation = -19991.018054 eV Core-core repulsion = 16941.883574 eV Total energy + Delta-G solvation = -3049.134480 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.17796 -38.39151 -36.16748 -34.46461 -32.99863 -31.97740 -30.95514 -30.14431 -27.59588 -25.15916 -22.88818 -22.47775 -21.67898 -21.30292 -20.18727 -19.94189 -17.61793 -16.89785 -16.12574 -15.92461 -15.53773 -15.00038 -14.61047 -14.42356 -14.25731 -14.17490 -13.72110 -13.43632 -12.86218 -12.80437 -12.53608 -12.36677 -12.19658 -12.00556 -11.84524 -11.36644 -11.21158 -11.19728 -11.04820 -10.84349 -10.72681 -10.69458 -10.51488 -10.28627 -10.17523 -9.68325 -9.59734 -9.07806 -8.91697 -7.25883 -5.78077 -3.14246 2.58064 3.11843 3.35086 3.37386 3.43329 4.35846 4.43859 4.44991 4.57226 4.71333 4.83263 4.93596 4.95212 5.10122 5.19000 5.20909 5.23379 5.29870 5.34725 5.41712 5.45898 5.49803 5.52469 5.63714 5.77341 5.79555 5.86768 5.91551 5.92713 5.95423 5.96013 6.03551 6.13242 6.24286 6.27619 6.43398 6.67391 6.70581 7.43181 7.98030 8.17183 8.40710 9.19377 9.91446 10.10982 11.40258 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.053946 B = 0.002490 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.911186 B =11243.151256 C =11565.539043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.887 3.113 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.160 3.840 11 C -0.141 4.141 12 C 0.122 3.878 13 N -0.731 5.731 14 C 0.509 3.491 15 O -0.538 6.538 16 C -0.139 4.139 17 C -0.070 4.070 18 C -0.121 4.121 19 C -0.118 4.118 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.115 4.115 23 H 0.260 0.740 24 H 0.360 0.640 25 H 0.030 0.970 26 H 0.030 0.970 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.399 0.601 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.272 -9.755 -0.874 30.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.193 4.193 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.109 0.891 9 N -0.403 5.403 10 C 0.032 3.968 11 C -0.180 4.180 12 C -0.002 4.002 13 N -0.383 5.383 14 C 0.296 3.704 15 O -0.415 6.415 16 C -0.179 4.179 17 C -0.089 4.089 18 C -0.158 4.158 19 C -0.155 4.155 20 C -0.158 4.158 21 C -0.156 4.156 22 C -0.153 4.153 23 H 0.070 0.930 24 H 0.193 0.807 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.233 0.767 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 28.716 -10.675 -0.872 30.648 hybrid contribution 0.622 1.819 0.012 1.922 sum 29.338 -8.856 -0.860 30.657 Atomic orbital electron populations 1.69705 1.05094 1.25843 1.57510 1.24701 0.95291 0.97283 1.02047 0.86507 0.79136 0.84882 0.77732 1.21074 1.21690 1.20403 1.19074 0.80577 0.94835 1.43056 0.89143 1.42689 1.04122 1.02159 1.91301 1.20502 0.87693 0.89498 0.99062 1.21993 0.97173 0.96293 1.02512 1.21320 0.78492 0.97767 1.02597 1.46141 1.07150 1.09428 1.75575 1.20702 0.88712 0.85146 0.75879 1.90676 1.80384 1.21254 1.49182 1.21774 0.91707 1.00144 1.04257 1.20906 0.93741 0.94615 0.99657 1.21713 1.02003 0.95860 0.96216 1.21504 0.94682 0.97658 1.01691 1.21559 0.96627 0.99924 0.97684 1.21501 0.99533 0.96551 0.98035 1.21596 0.94573 0.97402 1.01699 0.93030 0.80701 0.95178 0.95239 0.91397 0.91395 0.91271 0.91286 0.76682 0.88988 0.89009 0.90380 0.89865 0.92783 0.92264 0.91994 0.92194 0.92356 0.92194 0.91993 0.91971 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.53 13.97 55.49 0.78 -28.76 16 2 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 3 Si 0.89 22.03 27.74 -169.99 -4.71 17.32 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 7 C -0.25 -7.05 10.47 -15.06 -0.16 -7.20 16 8 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 9 N -0.76 -18.06 5.41 -59.91 -0.32 -18.38 16 10 C 0.16 3.05 6.26 -4.04 -0.03 3.02 16 11 C -0.14 -1.99 5.44 -26.73 -0.15 -2.14 16 12 C 0.12 1.56 5.67 -4.04 -0.02 1.54 16 13 N -0.73 -7.69 5.56 -60.30 -0.33 -8.02 16 14 C 0.51 5.77 7.55 -10.99 -0.08 5.69 16 15 O -0.54 -8.12 13.97 5.56 0.08 -8.04 16 16 C -0.14 -1.07 5.17 -27.88 -0.14 -1.21 16 17 C -0.07 -0.59 1.84 -90.62 -0.17 -0.76 16 18 C -0.12 -1.12 4.94 -26.73 -0.13 -1.25 16 19 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 20 C -0.12 -0.83 5.92 -26.73 -0.16 -0.99 16 21 C -0.12 -0.78 5.92 -26.76 -0.16 -0.94 16 22 C -0.12 -0.76 5.20 -26.76 -0.14 -0.90 16 23 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 24 H 0.36 8.26 5.53 -40.82 -0.23 8.03 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.40 3.14 8.47 -40.82 -0.35 2.80 16 32 H 0.09 0.55 8.14 -51.92 -0.42 0.13 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.79 7.95 -51.93 -0.41 0.37 16 35 H 0.08 0.99 5.95 -51.93 -0.31 0.68 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 345.88 15.07 5.21 5.21 Total: -1.00 -33.27 345.88 -8.97 -42.24 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -8.07 Total: 4.73 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -1.59 Total: -6.29 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.12 Total: -55.16 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.08 Total: -8.04 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.32 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.27 -8.97 -42.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154407646.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.212 kcal (2) G-P(sol) polarization free energy of solvation -33.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds