Wall clock time and date at job start Mon Mar 30 2020 01:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99807 * 2 1 4 4 H 1.48501 * 109.47093 * 269.99665 * 3 2 1 5 5 H 1.48493 * 109.47334 * 29.99727 * 3 2 1 6 6 H 1.48507 * 109.47240 * 150.00098 * 3 2 1 7 7 C 1.38815 * 120.00271 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99634 * 0.02562 * 7 2 1 9 9 N 1.36933 * 120.00106 * 179.97438 * 7 2 1 10 10 C 1.46500 * 119.99928 * 180.02562 * 9 7 2 11 11 C 1.53009 * 109.46974 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46870 * 180.02562 * 11 10 9 13 13 N 1.46501 * 109.46932 * 180.02562 * 12 11 10 14 14 C 1.34771 * 119.99915 * 180.02562 * 13 12 11 15 15 O 1.21278 * 120.00224 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00023 * 180.02562 * 14 13 12 17 17 C 1.53002 * 109.47344 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.46817 * 64.99877 * 17 16 14 19 19 C 1.52999 * 109.47317 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 17 21 21 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 22 22 C 1.53000 * 109.47233 * 184.99683 * 17 16 14 23 23 H 0.97001 * 119.99879 * 0.02562 * 1 2 3 24 24 H 0.96999 * 119.99960 * 0.02562 * 9 7 2 25 25 H 1.08999 * 109.47229 * 60.00372 * 10 9 7 26 26 H 1.08997 * 109.47028 * 299.99774 * 10 9 7 27 27 H 1.08999 * 109.46970 * 60.00053 * 11 10 9 28 28 H 1.08997 * 109.46927 * 299.99675 * 11 10 9 29 29 H 1.08995 * 109.46928 * 60.00012 * 12 11 10 30 30 H 1.08997 * 109.47011 * 300.00082 * 12 11 10 31 31 H 0.97002 * 119.99602 * 359.97438 * 13 12 11 32 32 H 1.09008 * 109.47224 * 59.99699 * 16 14 13 33 33 H 1.08997 * 109.47214 * 299.99692 * 16 14 13 34 34 H 1.09002 * 109.47070 * 305.00057 * 17 16 14 35 35 H 1.08996 * 109.47853 * 300.00202 * 18 17 16 36 36 H 1.09002 * 109.47153 * 60.00231 * 18 17 16 37 37 H 1.09000 * 109.47486 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.46716 * 60.00091 * 19 18 17 39 39 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 40 40 H 1.09001 * 109.46812 * 179.97438 * 20 19 18 41 41 H 1.08993 * 109.47194 * 179.97438 * 21 20 19 42 42 H 1.09002 * 109.46695 * 59.99734 * 21 20 19 43 43 H 1.08992 * 109.47399 * 300.00166 * 22 17 16 44 44 H 1.09004 * 109.46724 * 60.00652 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 6 5.6165 -2.1912 0.0000 12 6 6.3815 -3.5162 -0.0006 13 7 7.8218 -3.2485 0.0000 14 6 8.6976 -4.2728 -0.0010 15 8 8.2934 -5.4163 -0.0018 16 6 10.1792 -3.9974 0.0003 17 6 10.9443 -5.3224 -0.0005 18 6 10.6722 -6.0676 -1.3087 19 6 11.4377 -7.3923 -1.3099 20 6 12.9370 -7.1150 -1.1832 21 6 13.2092 -6.3699 0.1251 22 6 12.4437 -5.0457 0.1264 23 1 -0.4850 0.8401 -0.0004 24 1 3.8646 -0.3620 -0.0004 25 1 3.8486 -3.0426 -0.8898 26 1 3.8492 -3.0422 0.8902 27 1 5.8798 -1.6196 0.8900 28 1 5.8798 -1.6196 -0.8900 29 1 6.1181 -4.0873 -0.8908 30 1 6.1182 -4.0881 0.8891 31 1 8.1451 -2.3339 0.0003 32 1 10.4421 -3.4270 0.8912 33 1 10.4430 -3.4247 -0.8888 34 1 10.6150 -5.9326 0.8405 35 1 9.6040 -6.2648 -1.3993 36 1 11.0015 -5.4574 -2.1498 37 1 11.2442 -7.9230 -2.2421 38 1 11.1087 -8.0027 -0.4688 39 1 13.2660 -6.5047 -2.0242 40 1 13.4823 -8.0589 -1.1835 41 1 14.2773 -6.1728 0.2155 42 1 12.8802 -6.9803 0.9660 43 1 12.7730 -4.4355 -0.7146 44 1 12.6375 -4.5148 1.0585 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154407646.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:55 Heat of formation + Delta-G solvation = -87.681732 kcal Electronic energy + Delta-G solvation = -19991.982235 eV Core-core repulsion = 16941.883574 eV Total energy + Delta-G solvation = -3050.098661 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.02233 -39.09552 -37.59888 -35.92208 -33.95726 -33.54460 -31.72554 -31.54670 -28.48868 -26.61110 -24.09507 -23.45960 -22.72689 -22.49370 -21.09622 -20.56851 -19.64523 -17.81567 -17.17189 -16.90595 -16.45953 -16.21475 -15.96807 -15.64927 -15.05251 -14.95194 -14.87871 -14.82054 -14.34932 -13.95437 -13.78040 -13.27089 -13.00378 -12.91869 -12.84585 -12.55222 -12.52772 -12.41114 -12.08595 -12.01214 -11.94495 -11.81869 -11.81022 -11.30622 -11.23175 -10.99147 -10.88647 -10.52944 -10.03684 -9.33410 -8.04253 -5.39585 1.37765 1.43384 1.50788 1.71767 2.24326 2.48411 3.26607 3.55383 3.73921 3.78831 3.86625 4.05298 4.07070 4.23671 4.27531 4.28514 4.36139 4.51901 4.60796 4.63793 4.69994 4.70131 4.71293 4.79692 4.86588 4.89119 4.90541 5.07492 5.21609 5.25079 5.27549 5.28520 5.32955 5.36308 5.43398 5.48047 5.60528 5.65203 5.73210 6.19203 6.62817 7.05906 7.34070 7.80227 8.01552 9.17180 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.053946 B = 0.002490 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.911186 B =11243.151256 C =11565.539043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.069 4.069 3 Si 0.965 3.035 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.245 1.245 7 C -0.243 4.243 8 H 0.052 0.948 9 N -0.758 5.758 10 C 0.153 3.847 11 C -0.121 4.121 12 C 0.131 3.869 13 N -0.721 5.721 14 C 0.504 3.496 15 O -0.582 6.582 16 C -0.130 4.130 17 C -0.070 4.070 18 C -0.119 4.119 19 C -0.119 4.119 20 C -0.117 4.117 21 C -0.121 4.121 22 C -0.110 4.110 23 H 0.259 0.741 24 H 0.369 0.631 25 H 0.024 0.976 26 H 0.023 0.977 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.416 0.584 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.928 -7.778 -0.894 33.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.260 4.260 3 Si 0.791 3.209 4 H -0.202 1.202 5 H -0.222 1.222 6 H -0.170 1.170 7 C -0.374 4.374 8 H 0.070 0.930 9 N -0.404 5.404 10 C 0.027 3.973 11 C -0.159 4.159 12 C 0.006 3.994 13 N -0.374 5.374 14 C 0.292 3.708 15 O -0.463 6.463 16 C -0.170 4.170 17 C -0.089 4.089 18 C -0.157 4.157 19 C -0.157 4.157 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.147 4.147 23 H 0.068 0.932 24 H 0.203 0.797 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.253 0.747 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 32.437 -8.699 -0.890 33.595 hybrid contribution -0.580 1.048 0.007 1.198 sum 31.857 -7.651 -0.884 32.774 Atomic orbital electron populations 1.69908 1.07351 1.26909 1.59331 1.25662 0.96298 1.01826 1.02263 0.85274 0.78724 0.78682 0.78262 1.20156 1.22240 1.16959 1.19044 0.82859 0.93515 1.41983 0.93009 1.42649 1.02462 1.04211 1.91108 1.20664 0.90806 0.87536 0.98329 1.21756 0.93248 0.97024 1.03897 1.21030 0.80014 0.96798 1.01555 1.45993 1.05909 1.10390 1.75068 1.21428 0.90287 0.84430 0.74654 1.90673 1.81300 1.23158 1.51119 1.21814 0.88395 1.00206 1.06573 1.20877 0.95360 0.94603 0.98019 1.21660 1.00065 0.96642 0.97308 1.21507 0.95988 0.97129 1.01074 1.21540 0.95152 1.00500 0.98283 1.21530 1.00403 0.96487 0.97385 1.21566 0.92698 0.97587 1.02847 0.93231 0.79721 0.95820 0.95920 0.89998 0.89896 0.92456 0.92495 0.74693 0.86418 0.86597 0.92766 0.93070 0.91794 0.92392 0.93346 0.91474 0.91820 0.90767 0.92813 0.90765 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.77 13.97 21.65 0.30 -63.47 16 2 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 3 Si 0.96 44.72 27.74 68.60 1.90 46.62 16 4 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.25 -9.97 6.52 99.48 0.65 -9.32 16 7 C -0.24 -14.14 10.47 84.03 0.88 -13.26 16 8 H 0.05 3.33 8.06 -2.91 -0.02 3.31 16 9 N -0.76 -35.25 5.41 -343.44 -1.86 -37.10 16 10 C 0.15 5.72 6.26 86.38 0.54 6.26 16 11 C -0.12 -3.10 5.44 30.60 0.17 -2.94 16 12 C 0.13 3.18 5.67 86.38 0.49 3.67 16 13 N -0.72 -13.48 5.56 -463.08 -2.57 -16.05 16 14 C 0.50 10.71 7.55 87.66 0.66 11.37 16 15 O -0.58 -17.83 13.97 -3.02 -0.04 -17.87 16 16 C -0.13 -1.64 5.17 29.85 0.15 -1.48 16 17 C -0.07 -1.06 1.84 -10.79 -0.02 -1.08 16 18 C -0.12 -2.16 4.94 30.59 0.15 -2.00 16 19 C -0.12 -1.97 5.92 30.60 0.18 -1.79 16 20 C -0.12 -1.43 5.92 30.60 0.18 -1.25 16 21 C -0.12 -1.33 5.92 30.58 0.18 -1.15 16 22 C -0.11 -1.13 5.20 30.58 0.16 -0.97 16 23 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 24 H 0.37 15.79 5.53 -92.71 -0.51 15.28 16 25 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.42 4.99 8.47 -92.71 -0.79 4.21 16 32 H 0.12 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.05 1.09 7.95 -2.39 -0.02 1.07 16 35 H 0.05 1.26 5.95 -2.39 -0.01 1.25 16 36 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -74.52 345.88 1.53 -72.98 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -0.39 Total: 23.15 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 4.19 Total: -8.26 kcal Atomic # 7 Polarization: -112.49 SS G_CDS: -4.13 Total: -116.62 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.04 Total: -17.87 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.90 Total: 46.62 kcal Total: -74.52 1.53 -72.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154407646.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.700 kcal (2) G-P(sol) polarization free energy of solvation -74.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds