Wall clock time and date at job start Mon Mar 30 2020 01:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 110.01835 * 2 1 4 4 C 1.50698 * 109.47004 * 58.60783 * 3 2 1 5 5 O 1.21283 * 120.00472 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99538 * 179.97438 * 4 3 2 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 3 8 8 C 1.53004 * 109.47198 * 180.27868 * 7 6 4 9 9 C 1.52997 * 109.47000 * 179.97438 * 8 7 6 10 10 N 1.46506 * 109.46748 * 180.02562 * 9 8 7 11 11 C 1.36939 * 119.99838 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99927 * 0.02562 * 11 10 9 13 13 C 1.38815 * 119.99976 * 179.97438 * 11 10 9 14 14 N 1.31612 * 120.00037 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99973 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46997 * 60.00396 * 15 13 11 17 17 H 1.48501 * 109.46950 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47074 * 300.00402 * 15 13 11 19 19 C 1.54266 * 110.07101 * 121.41801 * 2 1 3 20 20 C 1.54894 * 104.19510 * 95.69338 * 19 2 1 21 21 C 1.54891 * 102.74672 * 37.94220 * 20 19 2 22 22 C 1.53877 * 110.02637 * 238.60885 * 2 1 3 23 23 H 1.08998 * 109.47262 * 60.69639 * 1 2 3 24 24 H 1.08996 * 109.47135 * 180.70328 * 1 2 3 25 25 H 1.09007 * 109.46830 * 300.70181 * 1 2 3 26 26 H 1.09003 * 109.46690 * 298.61132 * 3 2 1 27 27 H 1.08993 * 109.46773 * 178.61468 * 3 2 1 28 28 H 0.97001 * 120.00485 * 0.02562 * 6 4 3 29 29 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 30 30 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 31 31 H 1.08995 * 109.46638 * 300.00121 * 8 7 6 32 32 H 1.09006 * 109.47139 * 60.00254 * 8 7 6 33 33 H 1.08995 * 109.47672 * 299.99669 * 9 8 7 34 34 H 1.09007 * 109.47288 * 60.00489 * 9 8 7 35 35 H 0.96992 * 119.99973 * 359.97438 * 10 9 8 36 36 H 0.97003 * 120.00466 * 180.02562 * 14 13 11 37 37 H 1.09001 * 110.48393 * 214.37052 * 19 2 1 38 38 H 1.09001 * 110.48788 * 337.01931 * 19 2 1 39 39 H 1.08999 * 110.75881 * 279.63015 * 20 19 2 40 40 H 1.08996 * 110.75669 * 156.25542 * 20 19 2 41 41 H 1.08998 * 110.48516 * 203.37984 * 21 20 19 42 42 H 1.08995 * 110.60055 * 80.78984 * 21 20 19 43 43 H 1.08992 * 110.03522 * 359.94940 * 22 2 1 44 44 H 1.09000 * 110.03181 * 121.33641 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0538 1.4376 0.0000 4 6 1.5304 2.1629 1.2128 5 8 0.8098 1.5866 2.0000 6 7 1.8639 3.4516 1.4233 7 6 1.3503 4.1585 2.5991 8 6 1.8700 5.5976 2.5965 9 6 1.3330 6.3360 3.8242 10 7 1.8302 7.7141 3.8213 11 6 1.4792 8.5707 4.8304 12 1 0.8362 8.2302 5.6286 13 6 1.9507 9.8763 4.8279 14 7 2.7346 10.2910 3.8555 15 14 1.4713 11.0450 6.2041 16 1 1.9378 10.4976 7.5034 17 1 2.1004 12.3697 5.9701 18 1 -0.0056 11.1969 6.2325 19 6 2.0595 -0.7553 1.2365 20 6 2.3298 -2.1898 0.7185 21 6 2.8884 -1.9397 -0.7044 22 6 2.0570 -0.7530 -1.2341 23 1 -0.3634 0.5030 -0.8961 24 1 -0.3633 -1.0275 0.0126 25 1 -0.3633 0.5247 0.8837 26 1 1.7158 1.9473 -0.9022 27 1 3.1434 1.4272 0.0248 28 1 2.4405 3.9124 0.7939 29 1 0.2605 4.1658 2.5715 30 1 1.6874 3.6522 3.5036 31 1 2.9596 5.5903 2.6241 32 1 1.5328 6.1041 1.6921 33 1 0.2434 6.3432 3.7961 34 1 1.6699 5.8297 4.7289 35 1 2.4085 8.0195 3.1050 36 1 3.0645 11.2033 3.8540 37 1 2.9820 -0.2994 1.5959 38 1 1.3075 -0.7701 2.0254 39 1 1.4052 -2.7654 0.6747 40 1 3.0698 -2.6924 1.3412 41 1 2.7414 -2.8187 -1.3319 42 1 3.9450 -1.6758 -0.6606 43 1 1.2229 -1.1192 -1.8325 44 1 2.6853 -0.0941 -1.8335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157461694.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:24 Heat of formation + Delta-G solvation = -57.528009 kcal Electronic energy + Delta-G solvation = -20217.842639 eV Core-core repulsion = 17169.051541 eV Total energy + Delta-G solvation = -3048.791098 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.38550 -38.33206 -35.98249 -34.32476 -32.48448 -31.91319 -29.77669 -28.91800 -27.98018 -25.42295 -24.54961 -22.55198 -21.20780 -20.94595 -20.36983 -18.86798 -17.24184 -16.75211 -16.13580 -15.80080 -15.41671 -15.08208 -14.65666 -14.48725 -14.09265 -13.60645 -13.49051 -13.26114 -13.05377 -12.95817 -12.47889 -11.96340 -11.76348 -11.62875 -11.40793 -11.24250 -11.03297 -10.94783 -10.89635 -10.82965 -10.71042 -10.68935 -10.60617 -10.57413 -10.10952 -9.73920 -9.52496 -8.98050 -8.87826 -6.94091 -5.77523 -3.06503 2.65158 3.20231 3.44497 3.48452 3.49808 4.30808 4.34652 4.49018 4.58990 4.82118 4.96096 5.01345 5.14278 5.21489 5.26459 5.31611 5.34930 5.39949 5.46864 5.53370 5.57283 5.63870 5.64614 5.67594 5.78276 5.90671 5.96634 6.00050 6.07235 6.10581 6.17374 6.20894 6.23352 6.31863 6.37118 6.57877 6.78776 6.83094 7.52115 7.69290 8.25985 8.41510 9.52469 10.09631 10.44376 11.45461 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.058098 B = 0.002469 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.831381 B =11339.538105 C =11454.386702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.046 4.046 3 C -0.132 4.132 4 C 0.510 3.490 5 O -0.535 6.535 6 N -0.731 5.731 7 C 0.123 3.877 8 C -0.137 4.137 9 C 0.156 3.844 10 N -0.734 5.734 11 C -0.241 4.241 12 H 0.071 0.929 13 C -0.015 4.015 14 N -0.935 5.935 15 Si 0.909 3.091 16 H -0.285 1.285 17 H -0.291 1.291 18 H -0.285 1.285 19 C -0.108 4.108 20 C -0.128 4.128 21 C -0.124 4.124 22 C -0.118 4.118 23 H 0.044 0.956 24 H 0.049 0.951 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.400 0.600 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.021 0.979 34 H 0.021 0.979 35 H 0.383 0.617 36 H 0.256 0.744 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.268 -23.653 -12.071 26.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.047 4.047 3 C -0.172 4.172 4 C 0.296 3.704 5 O -0.412 6.412 6 N -0.382 5.382 7 C -0.001 4.001 8 C -0.176 4.176 9 C 0.028 3.972 10 N -0.378 5.378 11 C -0.372 4.372 12 H 0.089 0.911 13 C -0.211 4.211 14 N -0.584 5.584 15 Si 0.740 3.260 16 H -0.212 1.212 17 H -0.217 1.217 18 H -0.212 1.212 19 C -0.145 4.145 20 C -0.165 4.165 21 C -0.162 4.162 22 C -0.156 4.156 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.105 0.895 26 H 0.109 0.891 27 H 0.110 0.890 28 H 0.233 0.767 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.217 0.783 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.333 -23.980 -11.341 26.528 hybrid contribution 0.325 1.174 0.113 1.224 sum -0.009 -22.805 -11.228 25.420 Atomic orbital electron populations 1.22167 0.93834 1.01763 1.03116 1.20902 0.96309 0.92288 0.95180 1.21889 1.02072 0.96362 0.96893 1.20664 0.80646 0.81638 0.87430 1.90617 1.36946 1.66439 1.47191 1.46160 1.52194 1.12309 1.27546 1.21332 0.99048 0.92097 0.87641 1.21942 1.01387 0.93438 1.00806 1.20521 0.96342 0.86454 0.93862 1.42336 1.59529 1.06645 1.29312 1.19206 1.24503 0.91818 1.01651 0.91147 1.24757 1.00280 0.97437 0.98605 1.69646 1.38110 1.17396 1.33225 0.86235 0.77916 0.80289 0.81563 1.21214 1.21662 1.21218 1.22434 1.00913 0.94005 0.97148 1.22530 1.00545 0.97423 0.96013 1.22348 0.99396 0.97861 0.96602 1.22308 0.99473 0.96877 0.96894 0.93652 0.93144 0.89482 0.89098 0.89021 0.76660 0.91492 0.91478 0.91357 0.91362 0.96087 0.96092 0.78311 0.93446 0.92217 0.90436 0.91690 0.91886 0.92013 0.91803 0.91590 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 7.83 37.16 0.29 -1.21 16 2 C -0.05 -0.41 0.63 -153.39 -0.10 -0.51 16 3 C -0.13 -1.12 4.40 -27.88 -0.12 -1.24 16 4 C 0.51 5.98 7.29 -10.99 -0.08 5.90 16 5 O -0.53 -7.97 12.16 5.55 0.07 -7.90 16 6 N -0.73 -8.20 5.56 -60.29 -0.33 -8.53 16 7 C 0.12 1.66 5.67 -4.04 -0.02 1.64 16 8 C -0.14 -2.11 5.44 -26.73 -0.15 -2.25 16 9 C 0.16 3.14 6.26 -4.04 -0.03 3.12 16 10 N -0.73 -18.82 5.60 -59.90 -0.34 -19.15 16 11 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 12 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 13 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 14 N -0.94 -28.43 13.06 55.49 0.72 -27.71 16 15 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 C -0.11 -1.04 4.74 -25.07 -0.12 -1.16 16 20 C -0.13 -1.01 6.91 -24.73 -0.17 -1.19 16 21 C -0.12 -0.87 6.83 -25.07 -0.17 -1.04 16 22 C -0.12 -0.85 6.11 -25.61 -0.16 -1.01 16 23 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.09 1.09 5.43 -51.92 -0.28 0.80 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 0.65 8.12 -51.93 -0.42 0.22 16 28 H 0.40 3.52 8.47 -40.82 -0.35 3.18 16 29 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.38 10.20 7.67 -40.82 -0.31 9.88 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.06 0.60 7.84 -51.93 -0.41 0.19 16 38 H 0.08 0.90 7.15 -51.93 -0.37 0.53 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.46 7.67 -51.93 -0.40 0.07 16 44 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 LS Contribution 346.86 15.07 5.23 5.23 Total: -1.00 -31.99 346.86 -8.72 -40.72 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -7.98 Total: 6.28 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -1.07 Total: -6.48 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: 0.05 Total: -55.39 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: 0.07 Total: -7.90 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.99 -8.72 -40.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157461694.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.813 kcal (2) G-P(sol) polarization free energy of solvation -31.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds