Wall clock time and date at job start Mon Mar 30 2020 01:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 110.05299 * 2 1 4 4 C 1.54369 * 110.04891 * 238.52704 * 2 1 3 5 5 C 1.54890 * 104.19444 * 217.08541 * 4 2 1 6 6 C 1.54889 * 102.74753 * 37.97422 * 5 4 2 7 7 C 1.53875 * 110.03223 * 121.41034 * 2 1 3 8 8 H 1.09002 * 110.03284 * 238.62241 * 7 2 1 9 9 C 1.50694 * 110.03434 * 0.02562 * 7 2 1 10 10 O 1.21287 * 119.99991 * 85.98495 * 9 7 2 11 11 N 1.34774 * 120.00355 * 265.99108 * 9 7 2 12 12 C 1.46500 * 120.00221 * 179.97438 * 11 9 7 13 13 C 1.52999 * 109.46984 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47185 * 179.97438 * 13 12 11 15 15 N 1.46503 * 109.47231 * 179.97438 * 14 13 12 16 16 C 1.36933 * 120.00094 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99780 * 0.02562 * 16 15 14 18 18 C 1.38809 * 120.00181 * 179.97438 * 16 15 14 19 19 N 1.31614 * 119.99916 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99963 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46863 * 90.00631 * 20 18 16 22 22 H 1.48506 * 109.46888 * 210.00160 * 20 18 16 23 23 H 1.48493 * 109.47462 * 330.00209 * 20 18 16 24 24 H 1.08999 * 109.47641 * 297.17891 * 1 2 3 25 25 H 1.09001 * 109.47384 * 57.18114 * 1 2 3 26 26 H 1.08998 * 109.46925 * 177.17613 * 1 2 3 27 27 H 1.09001 * 109.47116 * 181.41675 * 3 2 1 28 28 H 1.09010 * 109.47057 * 301.41470 * 3 2 1 29 29 H 1.08998 * 109.47549 * 61.40992 * 3 2 1 30 30 H 1.08996 * 110.46755 * 98.42195 * 4 2 1 31 31 H 1.08998 * 110.62098 * 335.83325 * 4 2 1 32 32 H 1.09000 * 110.76175 * 279.65498 * 5 4 2 33 33 H 1.09008 * 110.75142 * 156.27937 * 5 4 2 34 34 H 1.09005 * 110.48715 * 203.38012 * 6 5 4 35 35 H 1.08994 * 110.49455 * 80.72948 * 6 5 4 36 36 H 0.97002 * 119.99729 * 359.97438 * 11 9 7 37 37 H 1.08996 * 109.47442 * 59.99848 * 12 11 9 38 38 H 1.09000 * 109.47180 * 299.99036 * 12 11 9 39 39 H 1.09002 * 109.47250 * 300.00352 * 13 12 11 40 40 H 1.09007 * 109.47354 * 60.00082 * 13 12 11 41 41 H 1.08997 * 109.47040 * 300.00209 * 14 13 12 42 42 H 1.08996 * 109.47207 * 60.00157 * 14 13 12 43 43 H 0.97004 * 120.00088 * 359.97438 * 15 14 13 44 44 H 0.97003 * 120.00309 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4373 0.0000 4 6 2.0592 -0.7571 -1.2368 5 6 3.3147 -1.5013 -0.7181 6 6 2.8882 -1.9405 0.7047 7 6 2.0571 -0.7534 1.2338 8 1 2.6859 -0.0949 1.8330 9 6 0.9038 -1.2595 2.0613 10 8 0.3928 -2.3280 1.8001 11 7 0.4401 -0.5248 3.0916 12 6 -0.6814 -1.0165 3.8957 13 6 -1.0069 -0.0004 4.9923 14 6 -2.1786 -0.5136 5.8317 15 7 -2.4899 0.4591 6.8820 16 6 -3.5092 0.2132 7.7627 17 1 -4.0834 -0.6981 7.6832 18 6 -3.8038 1.1345 8.7582 19 7 -3.1038 2.2448 8.8554 20 14 -5.1948 0.7993 9.9592 21 1 -4.6654 0.0678 11.1381 22 1 -5.7883 2.0869 10.4011 23 1 -6.2365 -0.0231 9.2932 24 1 -0.3634 0.4694 0.9142 25 1 -0.3634 0.5570 -0.8636 26 1 -0.3633 -1.0264 -0.0506 27 1 3.1443 1.4263 -0.0254 28 1 1.6760 1.9623 -0.8771 29 1 1.7173 1.9473 0.9023 30 1 2.3303 -0.0557 -2.0258 31 1 1.3165 -1.4682 -1.5985 32 1 4.1717 -0.8291 -0.6743 33 1 3.5342 -2.3688 -1.3406 34 1 3.7644 -2.1026 1.3326 35 1 2.2784 -2.8427 0.6588 36 1 0.8489 0.3296 3.3007 37 1 -0.4114 -1.9688 4.3520 38 1 -1.5538 -1.1540 3.2569 39 1 -0.1344 0.1369 5.6311 40 1 -1.2769 0.9523 4.5364 41 1 -3.0509 -0.6505 5.1926 42 1 -1.9092 -1.4662 6.2876 43 1 -1.9735 1.2771 6.9541 44 1 -3.3098 2.8889 9.5508 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164164146.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:47 Heat of formation + Delta-G solvation = -79.326924 kcal Electronic energy + Delta-G solvation = -20642.166175 eV Core-core repulsion = 17592.429805 eV Total energy + Delta-G solvation = -3049.736370 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.61409 -38.89732 -37.44287 -35.89615 -33.79655 -33.11013 -31.57861 -30.03249 -28.24338 -27.00106 -25.62822 -24.38728 -22.60505 -22.22455 -21.27542 -19.75659 -19.09099 -17.91036 -17.16425 -16.92912 -16.51658 -16.30598 -15.72349 -15.40830 -15.29422 -15.02059 -14.62024 -14.46460 -14.14790 -13.86542 -13.54787 -13.32123 -12.93328 -12.82766 -12.77266 -12.57573 -12.44718 -12.34192 -12.09267 -12.06758 -11.91942 -11.82237 -11.69915 -11.53259 -11.41644 -11.36050 -10.96273 -10.72622 -10.07565 -9.03831 -7.98027 -5.27438 1.46952 1.48686 1.57316 1.65675 2.20079 2.55453 3.35799 3.47940 3.58307 3.70647 3.75488 4.06090 4.11016 4.26406 4.30937 4.38981 4.41745 4.46499 4.47286 4.53247 4.70235 4.71274 4.73693 4.78255 4.86052 4.88778 5.02824 5.04030 5.08682 5.18906 5.22345 5.26110 5.29279 5.33558 5.36118 5.41321 5.47134 5.49292 5.55130 6.24759 6.58395 7.28123 7.31177 8.05342 8.29676 9.25524 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.044203 B = 0.002842 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.285090 B = 9850.134529 C =10074.018398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.051 4.051 3 C -0.137 4.137 4 C -0.115 4.115 5 C -0.116 4.116 6 C -0.116 4.116 7 C -0.104 4.104 8 H 0.114 0.886 9 C 0.522 3.478 10 O -0.585 6.585 11 N -0.720 5.720 12 C 0.134 3.866 13 C -0.117 4.117 14 C 0.152 3.848 15 N -0.747 5.747 16 C -0.251 4.251 17 H 0.074 0.926 18 C -0.074 4.074 19 N -0.968 5.968 20 Si 0.975 3.025 21 H -0.285 1.285 22 H -0.293 1.293 23 H -0.270 1.270 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.039 0.961 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.413 0.587 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.020 0.980 42 H 0.021 0.979 43 H 0.376 0.624 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.615 -2.800 -21.351 26.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.051 4.051 3 C -0.194 4.194 4 C -0.152 4.152 5 C -0.153 4.153 6 C -0.154 4.154 7 C -0.125 4.125 8 H 0.133 0.867 9 C 0.310 3.690 10 O -0.465 6.465 11 N -0.372 5.372 12 C 0.009 3.991 13 C -0.155 4.155 14 C 0.025 3.975 15 N -0.390 5.390 16 C -0.383 4.383 17 H 0.092 0.908 18 C -0.267 4.267 19 N -0.619 5.619 20 Si 0.804 3.196 21 H -0.212 1.212 22 H -0.219 1.219 23 H -0.195 1.195 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.058 0.942 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.250 0.750 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.038 0.962 42 H 0.039 0.961 43 H 0.208 0.792 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 15.089 -3.659 -21.458 26.486 hybrid contribution -0.790 0.436 1.166 1.474 sum 14.299 -3.223 -20.292 25.032 Atomic orbital electron populations 1.22098 0.95545 1.01167 1.02192 1.21093 0.94532 0.96329 0.93178 1.21931 1.01833 0.93050 1.02593 1.22513 0.97281 0.98852 0.96586 1.22465 0.97823 1.00384 0.94621 1.22372 0.98831 0.96570 0.97659 1.22213 0.94373 0.99358 0.96587 0.86749 1.21023 0.84624 0.83642 0.79694 1.90660 1.61136 1.24374 1.70350 1.46063 1.35189 1.24248 1.31683 1.21040 0.89106 0.96963 0.91971 1.21692 0.98599 0.98850 0.96378 1.20671 0.95255 0.92208 0.89327 1.42540 1.39419 1.22567 1.34452 1.19643 1.08468 1.03094 1.07067 0.90796 1.25589 1.02583 0.96861 1.01629 1.69803 1.44190 1.11252 1.36636 0.85121 0.78961 0.76634 0.78927 1.21246 1.21894 1.19539 0.92991 0.91312 0.94229 0.90857 0.91692 0.92223 0.89709 0.92801 0.89534 0.90923 0.90270 0.92463 0.75020 0.92297 0.92400 0.90740 0.90787 0.96152 0.96128 0.79201 0.93835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 7.23 71.98 0.52 -2.48 16 2 C -0.05 -0.77 0.94 -51.42 -0.05 -0.82 16 3 C -0.14 -1.47 8.15 71.98 0.59 -0.89 16 4 C -0.11 -1.59 5.90 31.70 0.19 -1.40 16 5 C -0.12 -1.43 6.91 31.89 0.22 -1.21 16 6 C -0.12 -1.97 6.31 31.67 0.20 -1.77 16 7 C -0.10 -1.77 2.94 -10.82 -0.03 -1.80 16 8 H 0.11 1.40 7.67 -2.39 -0.02 1.38 16 9 C 0.52 12.81 4.71 87.66 0.41 13.23 16 10 O -0.58 -19.43 14.90 -3.05 -0.05 -19.47 16 11 N -0.72 -16.10 5.10 -463.07 -2.36 -18.46 16 12 C 0.13 3.65 5.67 86.38 0.49 4.14 16 13 C -0.12 -3.51 5.44 30.59 0.17 -3.35 16 14 C 0.15 6.11 6.26 86.38 0.54 6.65 16 15 N -0.75 -38.37 5.60 -343.46 -1.92 -40.30 16 16 C -0.25 -14.27 9.99 84.03 0.84 -13.43 16 17 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 18 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 19 N -0.97 -59.22 13.06 21.65 0.28 -58.93 16 20 Si 0.98 46.34 29.55 68.60 2.03 48.37 16 21 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 22 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 23 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 24 H 0.05 1.08 7.08 -2.39 -0.02 1.06 16 25 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.04 0.99 6.94 -2.39 -0.02 0.97 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.08 0.89 7.84 -2.39 -0.02 0.87 16 31 H 0.05 0.91 7.83 -2.39 -0.02 0.90 16 32 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.08 1.12 8.14 -2.38 -0.02 1.11 16 35 H 0.06 1.32 6.89 -2.39 -0.02 1.30 16 36 H 0.41 6.96 8.47 -92.71 -0.79 6.17 16 37 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 41 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.38 20.13 7.67 -92.70 -0.71 19.42 16 44 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -69.83 347.88 2.00 -67.82 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: -0.53 Total: 27.93 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 4.55 Total: -6.96 kcal Atomic # 7 Polarization: -113.69 SS G_CDS: -4.00 Total: -117.69 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.05 Total: -19.47 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -69.83 2.00 -67.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164164146.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.503 kcal (2) G-P(sol) polarization free energy of solvation -69.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds