Wall clock time and date at job start Mon Mar 30 2020 01:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 110.05838 * 2 1 4 4 C 1.53883 * 110.03025 * 238.58647 * 2 1 3 5 5 C 1.54268 * 106.59713 * 240.71574 * 4 2 1 6 6 C 1.54892 * 104.19582 * 336.38793 * 5 4 2 7 7 C 1.54258 * 110.03373 * 121.42103 * 2 1 3 8 8 H 1.09002 * 110.60259 * 24.15802 * 7 2 1 9 9 C 1.50708 * 110.48636 * 261.57159 * 7 2 1 10 10 O 1.21281 * 119.99935 * 269.18967 * 9 7 2 11 11 N 1.34771 * 120.00004 * 89.18554 * 9 7 2 12 12 C 1.46501 * 119.99992 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.47074 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47323 * 180.02562 * 13 12 11 15 15 N 1.46497 * 109.47477 * 180.02562 * 14 13 12 16 16 C 1.36936 * 120.00037 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99936 * 359.97438 * 16 15 14 18 18 C 1.38808 * 119.99849 * 180.02562 * 16 15 14 19 19 N 1.31615 * 120.00390 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99776 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46749 * 269.99340 * 20 18 16 22 22 H 1.48504 * 109.47070 * 149.99783 * 20 18 16 23 23 H 1.48497 * 109.47369 * 29.99602 * 20 18 16 24 24 H 1.08997 * 109.47326 * 298.58551 * 1 2 3 25 25 H 1.09007 * 109.46867 * 58.58368 * 1 2 3 26 26 H 1.08999 * 109.47276 * 178.57958 * 1 2 3 27 27 H 1.08995 * 109.47431 * 175.70768 * 3 2 1 28 28 H 1.09008 * 109.47173 * 295.70445 * 3 2 1 29 29 H 1.08996 * 109.46953 * 55.70087 * 3 2 1 30 30 H 1.08996 * 110.03423 * 121.43034 * 4 2 1 31 31 H 1.09002 * 110.07251 * 0.02562 * 4 2 1 32 32 H 1.08997 * 110.48400 * 217.71432 * 5 4 2 33 33 H 1.09000 * 110.59978 * 95.12246 * 5 4 2 34 34 H 1.08996 * 110.75880 * 279.63070 * 6 5 4 35 35 H 1.09004 * 110.75729 * 156.25244 * 6 5 4 36 36 H 0.97002 * 120.00344 * 0.02562 * 11 9 7 37 37 H 1.09000 * 109.46943 * 60.00106 * 12 11 9 38 38 H 1.08998 * 109.47168 * 300.00188 * 12 11 9 39 39 H 1.09000 * 109.47183 * 60.00211 * 13 12 11 40 40 H 1.08998 * 109.47243 * 300.00100 * 13 12 11 41 41 H 1.09000 * 109.46834 * 59.99979 * 14 13 12 42 42 H 1.09004 * 109.46817 * 300.00594 * 14 13 12 43 43 H 0.96999 * 119.99492 * 0.02562 * 15 14 13 44 44 H 0.97004 * 119.99560 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0571 -0.7535 -1.2338 5 6 2.8874 -1.9407 -0.7037 6 6 3.3137 -1.5008 0.7190 7 6 2.0584 -0.7555 1.2367 8 1 1.3152 -1.4660 1.5987 9 6 2.4335 0.2148 2.3271 10 8 3.5645 0.6481 2.3906 11 7 1.5121 0.6012 3.2316 12 6 1.8766 1.5449 4.2913 13 6 0.6577 1.8139 5.1760 14 6 1.0382 2.7999 6.2823 15 7 -0.1288 3.0571 7.1298 16 6 -0.0275 3.9147 8.1925 17 1 0.9128 4.4012 8.4061 18 6 -1.1330 4.1579 8.9959 19 7 -2.2788 3.5647 8.7360 20 14 -0.9951 5.3285 10.4452 21 1 -0.5921 4.5704 11.6570 22 1 -2.3086 5.9794 10.6825 23 1 0.0251 6.3659 10.1482 24 1 -0.3634 0.4917 0.9024 25 1 -0.3633 0.5357 -0.8771 26 1 -0.3634 -1.0273 -0.0255 27 1 3.1419 1.4271 0.0769 28 1 1.7606 1.9314 -0.9260 29 1 1.6354 1.9771 0.8489 30 1 2.6866 -0.0954 -1.8326 31 1 1.2233 -1.1191 -1.8333 32 1 3.7636 -2.1037 -1.3311 33 1 2.2790 -2.8439 -0.6574 34 1 4.1710 -0.8291 0.6750 35 1 3.5325 -2.3680 1.3421 36 1 0.6076 0.2544 3.1811 37 1 2.2152 2.4797 3.8446 38 1 2.6777 1.1202 4.8963 39 1 0.3195 0.8789 5.6227 40 1 -0.1436 2.2384 4.5713 41 1 1.3761 3.7348 5.8352 42 1 1.8397 2.3758 6.8871 43 1 -0.9731 2.6198 6.9382 44 1 -2.3505 2.9571 7.9831 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164164147.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:50 Heat of formation + Delta-G solvation = -59.830597 kcal Electronic energy + Delta-G solvation = -20674.863660 eV Core-core repulsion = 17625.972715 eV Total energy + Delta-G solvation = -3048.890945 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.71336 -38.10466 -36.08866 -34.54224 -32.55520 -32.09780 -30.06862 -28.86239 -27.59592 -25.44810 -24.54169 -22.80866 -21.43077 -21.31042 -20.41898 -18.95150 -17.34272 -17.01291 -16.07895 -15.90716 -15.43263 -14.88106 -14.57721 -14.40181 -13.85890 -13.68915 -13.66618 -13.59568 -13.15820 -13.12491 -12.50332 -12.23312 -12.02874 -11.77102 -11.52120 -11.39340 -11.17770 -10.96242 -10.92007 -10.86878 -10.79388 -10.77010 -10.61430 -10.53850 -10.01633 -9.74720 -9.18422 -9.05433 -8.88919 -7.02159 -6.11928 -3.11572 2.59927 3.15266 3.51966 3.56985 3.70932 4.14439 4.22459 4.37963 4.66265 4.82138 4.94178 4.99218 5.01787 5.06825 5.09575 5.13523 5.23519 5.31064 5.39986 5.51740 5.54732 5.60289 5.60914 5.61188 5.70012 5.79907 5.80982 5.89957 5.95780 5.99184 6.00054 6.01764 6.09456 6.14990 6.19759 6.45046 6.70032 6.73932 7.47690 7.80851 8.20820 8.74843 9.21738 10.08052 10.22635 11.36974 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.043654 B = 0.002865 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.254456 B = 9772.469461 C =10014.121389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.053 4.053 3 C -0.147 4.147 4 C -0.115 4.115 5 C -0.124 4.124 6 C -0.108 4.108 7 C -0.108 4.108 8 H 0.093 0.907 9 C 0.523 3.477 10 O -0.542 6.542 11 N -0.729 5.729 12 C 0.123 3.877 13 C -0.138 4.138 14 C 0.162 3.838 15 N -0.745 5.745 16 C -0.332 4.332 17 H 0.066 0.934 18 C -0.046 4.046 19 N -0.945 5.945 20 Si 1.084 2.916 21 H -0.295 1.295 22 H -0.287 1.287 23 H -0.294 1.294 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.399 0.601 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.022 0.978 42 H 0.022 0.978 43 H 0.366 0.634 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.350 -11.589 -21.444 25.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.054 4.054 3 C -0.205 4.205 4 C -0.152 4.152 5 C -0.161 4.161 6 C -0.146 4.146 7 C -0.130 4.130 8 H 0.111 0.889 9 C 0.310 3.690 10 O -0.419 6.419 11 N -0.380 5.380 12 C -0.001 4.001 13 C -0.176 4.176 14 C 0.034 3.966 15 N -0.391 5.391 16 C -0.463 4.463 17 H 0.084 0.916 18 C -0.244 4.244 19 N -0.591 5.591 20 Si 0.915 3.085 21 H -0.223 1.223 22 H -0.213 1.213 23 H -0.221 1.221 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.233 0.767 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.040 0.960 42 H 0.040 0.960 43 H 0.199 0.801 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.556 -10.435 -20.066 23.846 hybrid contribution 0.089 -0.982 -1.258 1.598 sum 7.645 -11.417 -21.324 25.368 Atomic orbital electron populations 1.21985 0.93871 1.01930 1.02287 1.21060 0.95513 0.95601 0.93209 1.22041 1.02088 0.94550 1.01784 1.22281 0.99504 0.96861 0.96563 1.22346 0.99658 0.97890 0.96238 1.22430 0.96948 0.99645 0.95588 1.22317 0.99892 0.96778 0.93996 0.88874 1.20405 0.85033 0.81722 0.81879 1.90680 1.20506 1.56576 1.74141 1.46159 1.14088 1.47465 1.30301 1.21317 0.97836 0.92665 0.88279 1.21954 0.97083 1.00944 0.97663 1.20455 0.91098 0.94890 0.90179 1.42356 1.08452 1.55073 1.33224 1.20082 0.98641 1.21321 1.06256 0.91644 1.25813 0.92360 1.03122 1.03076 1.70857 1.25317 1.31696 1.31223 0.83182 0.75176 0.75192 0.74993 1.22259 1.21337 1.22102 0.92445 0.92173 0.92269 0.91521 0.92452 0.92520 0.91403 0.91442 0.91405 0.91590 0.89686 0.91365 0.76716 0.91455 0.91416 0.91441 0.91463 0.95971 0.95975 0.80054 0.93435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 8.16 37.16 0.30 -0.73 16 2 C -0.05 -0.44 0.86 -153.39 -0.13 -0.57 16 3 C -0.15 -1.47 7.13 37.16 0.27 -1.20 16 4 C -0.11 -0.82 6.11 -25.61 -0.16 -0.97 16 5 C -0.12 -0.86 6.83 -25.07 -0.17 -1.03 16 6 C -0.11 -0.97 6.17 -24.73 -0.15 -1.13 16 7 C -0.11 -1.00 2.70 -90.11 -0.24 -1.25 16 8 H 0.09 0.72 7.86 -51.93 -0.41 0.31 16 9 C 0.52 6.51 5.00 -10.98 -0.05 6.46 16 10 O -0.54 -8.73 15.00 5.56 0.08 -8.65 16 11 N -0.73 -8.51 5.56 -60.29 -0.33 -8.85 16 12 C 0.12 1.71 5.67 -4.04 -0.02 1.68 16 13 C -0.14 -2.14 5.44 -26.73 -0.15 -2.28 16 14 C 0.16 3.32 6.26 -4.04 -0.03 3.29 16 15 N -0.75 -19.22 5.60 -59.91 -0.34 -19.55 16 16 C -0.33 -9.62 9.99 -15.06 -0.15 -9.77 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.05 -1.37 5.50 -17.43 -0.10 -1.47 16 19 N -0.95 -29.55 13.70 55.49 0.76 -28.79 16 20 Si 1.08 26.30 29.92 -169.99 -5.09 21.21 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.77 7.44 -51.93 -0.39 0.38 16 28 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 29 H 0.06 0.64 7.31 -51.93 -0.38 0.26 16 30 H 0.07 0.49 7.67 -51.93 -0.40 0.09 16 31 H 0.07 0.41 7.67 -51.93 -0.40 0.02 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.93 7.25 -51.93 -0.38 0.55 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.40 3.75 8.47 -40.82 -0.35 3.41 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.37 9.50 6.50 -40.82 -0.27 9.24 16 44 H 0.25 7.79 6.77 -40.82 -0.28 7.51 16 LS Contribution 347.55 15.07 5.24 5.24 Total: -1.00 -33.64 347.55 -8.40 -42.03 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -7.94 Total: 6.33 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -0.78 Total: -8.98 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 0.09 Total: -57.19 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.08 Total: -8.65 kcal Atomic # 14 Polarization: 26.30 SS G_CDS: -5.09 Total: 21.21 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.64 -8.40 -42.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164164147.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.798 kcal (2) G-P(sol) polarization free energy of solvation -33.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds