Wall clock time and date at job start Mon Mar 30 2020 01:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 110.05838 * 2 1 4 4 C 1.53883 * 110.03025 * 238.58647 * 2 1 3 5 5 C 1.54268 * 106.59713 * 240.71574 * 4 2 1 6 6 C 1.54892 * 104.19582 * 336.38793 * 5 4 2 7 7 C 1.54258 * 110.03373 * 121.42103 * 2 1 3 8 8 H 1.09002 * 110.60259 * 24.15802 * 7 2 1 9 9 C 1.50708 * 110.48636 * 261.57159 * 7 2 1 10 10 O 1.21281 * 119.99935 * 269.18967 * 9 7 2 11 11 N 1.34771 * 120.00004 * 89.18554 * 9 7 2 12 12 C 1.46501 * 119.99992 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.47074 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47323 * 180.02562 * 13 12 11 15 15 N 1.46497 * 109.47477 * 180.02562 * 14 13 12 16 16 C 1.36936 * 120.00037 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99936 * 359.97438 * 16 15 14 18 18 C 1.38808 * 119.99849 * 180.02562 * 16 15 14 19 19 N 1.31615 * 120.00390 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99776 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46749 * 269.99340 * 20 18 16 22 22 H 1.48504 * 109.47070 * 149.99783 * 20 18 16 23 23 H 1.48497 * 109.47369 * 29.99602 * 20 18 16 24 24 H 1.08997 * 109.47326 * 298.58551 * 1 2 3 25 25 H 1.09007 * 109.46867 * 58.58368 * 1 2 3 26 26 H 1.08999 * 109.47276 * 178.57958 * 1 2 3 27 27 H 1.08995 * 109.47431 * 175.70768 * 3 2 1 28 28 H 1.09008 * 109.47173 * 295.70445 * 3 2 1 29 29 H 1.08996 * 109.46953 * 55.70087 * 3 2 1 30 30 H 1.08996 * 110.03423 * 121.43034 * 4 2 1 31 31 H 1.09002 * 110.07251 * 0.02562 * 4 2 1 32 32 H 1.08997 * 110.48400 * 217.71432 * 5 4 2 33 33 H 1.09000 * 110.59978 * 95.12246 * 5 4 2 34 34 H 1.08996 * 110.75880 * 279.63070 * 6 5 4 35 35 H 1.09004 * 110.75729 * 156.25244 * 6 5 4 36 36 H 0.97002 * 120.00344 * 0.02562 * 11 9 7 37 37 H 1.09000 * 109.46943 * 60.00106 * 12 11 9 38 38 H 1.08998 * 109.47168 * 300.00188 * 12 11 9 39 39 H 1.09000 * 109.47183 * 60.00211 * 13 12 11 40 40 H 1.08998 * 109.47243 * 300.00100 * 13 12 11 41 41 H 1.09000 * 109.46834 * 59.99979 * 14 13 12 42 42 H 1.09004 * 109.46817 * 300.00594 * 14 13 12 43 43 H 0.96999 * 119.99492 * 0.02562 * 15 14 13 44 44 H 0.97004 * 119.99560 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0571 -0.7535 -1.2338 5 6 2.8874 -1.9407 -0.7037 6 6 3.3137 -1.5008 0.7190 7 6 2.0584 -0.7555 1.2367 8 1 1.3152 -1.4660 1.5987 9 6 2.4335 0.2148 2.3271 10 8 3.5645 0.6481 2.3906 11 7 1.5121 0.6012 3.2316 12 6 1.8766 1.5449 4.2913 13 6 0.6577 1.8139 5.1760 14 6 1.0382 2.7999 6.2823 15 7 -0.1288 3.0571 7.1298 16 6 -0.0275 3.9147 8.1925 17 1 0.9128 4.4012 8.4061 18 6 -1.1330 4.1579 8.9959 19 7 -2.2788 3.5647 8.7360 20 14 -0.9951 5.3285 10.4452 21 1 -0.5921 4.5704 11.6570 22 1 -2.3086 5.9794 10.6825 23 1 0.0251 6.3659 10.1482 24 1 -0.3634 0.4917 0.9024 25 1 -0.3633 0.5357 -0.8771 26 1 -0.3634 -1.0273 -0.0255 27 1 3.1419 1.4271 0.0769 28 1 1.7606 1.9314 -0.9260 29 1 1.6354 1.9771 0.8489 30 1 2.6866 -0.0954 -1.8326 31 1 1.2233 -1.1191 -1.8333 32 1 3.7636 -2.1037 -1.3311 33 1 2.2790 -2.8439 -0.6574 34 1 4.1710 -0.8291 0.6750 35 1 3.5325 -2.3680 1.3421 36 1 0.6076 0.2544 3.1811 37 1 2.2152 2.4797 3.8446 38 1 2.6777 1.1202 4.8963 39 1 0.3195 0.8789 5.6227 40 1 -0.1436 2.2384 4.5713 41 1 1.3761 3.7348 5.8352 42 1 1.8397 2.3758 6.8871 43 1 -0.9731 2.6198 6.9382 44 1 -2.3505 2.9571 7.9831 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164164147.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:49 Heat of formation + Delta-G solvation = -81.956884 kcal Electronic energy + Delta-G solvation = -20675.823128 eV Core-core repulsion = 17625.972715 eV Total energy + Delta-G solvation = -3049.850413 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.59163 -38.98375 -37.65758 -36.11334 -33.89723 -33.12618 -31.45050 -30.00279 -28.28049 -26.83250 -25.62593 -24.58177 -22.74296 -22.32808 -21.20901 -19.83800 -19.35169 -17.98808 -17.20800 -16.97156 -16.52258 -16.32753 -15.88865 -15.59104 -15.47289 -14.96860 -14.56398 -14.54043 -14.25848 -14.03121 -13.66384 -13.03960 -12.99116 -12.92291 -12.72618 -12.68216 -12.42102 -12.41123 -12.14768 -11.97243 -11.88060 -11.68845 -11.54227 -11.45966 -11.35426 -11.31852 -10.97373 -10.76314 -10.14219 -9.16843 -8.44751 -5.39089 1.57701 1.61499 1.68372 1.83052 2.14872 2.69310 3.35736 3.45939 3.54037 3.59645 3.68540 3.96031 4.06875 4.14459 4.23647 4.32725 4.36015 4.38783 4.44206 4.48456 4.60246 4.60996 4.69079 4.72503 4.77181 4.87872 4.99084 4.99986 5.08792 5.14042 5.15590 5.17644 5.21056 5.31740 5.33985 5.39690 5.44514 5.51496 5.54491 6.46473 6.53181 7.05074 7.23557 7.95002 8.05149 9.07825 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.043654 B = 0.002865 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.254456 B = 9772.469461 C =10014.121389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.051 4.051 3 C -0.145 4.145 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.112 4.112 7 C -0.105 4.105 8 H 0.117 0.883 9 C 0.521 3.479 10 O -0.583 6.583 11 N -0.720 5.720 12 C 0.134 3.866 13 C -0.117 4.117 14 C 0.158 3.842 15 N -0.758 5.758 16 C -0.341 4.341 17 H 0.065 0.935 18 C -0.102 4.102 19 N -0.973 5.973 20 Si 1.131 2.869 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.274 1.274 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.038 0.962 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.413 0.587 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.019 0.981 42 H 0.020 0.980 43 H 0.363 0.637 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.898 -12.564 -22.416 26.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.051 4.051 3 C -0.202 4.202 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.150 4.150 7 C -0.126 4.126 8 H 0.135 0.865 9 C 0.309 3.691 10 O -0.463 6.463 11 N -0.372 5.372 12 C 0.010 3.990 13 C -0.155 4.155 14 C 0.031 3.969 15 N -0.403 5.403 16 C -0.473 4.473 17 H 0.083 0.917 18 C -0.294 4.294 19 N -0.621 5.621 20 Si 0.955 3.045 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.200 1.200 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.249 0.751 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.037 0.963 42 H 0.038 0.962 43 H 0.196 0.804 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.115 -11.437 -21.074 25.011 hybrid contribution 0.302 -0.675 -1.000 1.244 sum 7.417 -12.112 -22.074 26.248 Atomic orbital electron populations 1.21986 0.92535 1.03066 1.02331 1.21079 0.96479 0.94269 0.93307 1.22007 1.00543 0.96046 1.01602 1.22285 1.00059 0.96692 0.95998 1.22335 1.00128 0.98368 0.94616 1.22431 0.95974 0.99224 0.97325 1.22410 1.00666 0.96394 0.93144 0.86483 1.21031 0.84324 0.81579 0.82135 1.90665 1.22341 1.58165 1.75162 1.46035 1.14836 1.46801 1.29506 1.21017 0.96730 0.92814 0.88468 1.21699 0.97712 0.99845 0.96289 1.20602 0.89427 0.96016 0.90882 1.42554 1.09759 1.54676 1.33359 1.20432 0.98571 1.21312 1.06938 0.91732 1.27279 0.91950 1.04434 1.05708 1.70964 1.26445 1.32957 1.31712 0.82584 0.75506 0.73921 0.72449 1.20940 1.21607 1.19962 0.92971 0.91632 0.90584 0.93744 0.91255 0.94255 0.91811 0.89649 0.90859 0.89886 0.92308 0.90890 0.75076 0.92414 0.92254 0.90684 0.90763 0.96287 0.96235 0.80450 0.94379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.16 71.98 0.59 -1.06 16 2 C -0.05 -0.75 0.86 -51.46 -0.04 -0.80 16 3 C -0.14 -2.84 7.13 71.98 0.51 -2.33 16 4 C -0.11 -1.34 6.11 31.32 0.19 -1.15 16 5 C -0.12 -1.35 6.83 31.67 0.22 -1.14 16 6 C -0.11 -1.89 6.17 31.89 0.20 -1.69 16 7 C -0.10 -1.77 2.70 -10.46 -0.03 -1.80 16 8 H 0.12 1.44 7.86 -2.39 -0.02 1.42 16 9 C 0.52 12.75 5.00 87.66 0.44 13.19 16 10 O -0.58 -19.26 15.00 -3.03 -0.05 -19.30 16 11 N -0.72 -16.11 5.56 -463.06 -2.57 -18.68 16 12 C 0.13 3.68 5.67 86.38 0.49 4.17 16 13 C -0.12 -3.53 5.44 30.59 0.17 -3.36 16 14 C 0.16 6.43 6.26 86.38 0.54 6.97 16 15 N -0.76 -39.17 5.60 -343.46 -1.92 -41.10 16 16 C -0.34 -19.75 9.99 84.03 0.84 -18.92 16 17 H 0.06 3.67 7.83 -2.91 -0.02 3.65 16 18 C -0.10 -6.03 5.50 84.86 0.47 -5.56 16 19 N -0.97 -61.10 13.70 21.65 0.30 -60.80 16 20 Si 1.13 52.43 29.92 68.60 2.05 54.48 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 26 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.04 1.06 7.44 -2.39 -0.02 1.04 16 28 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.04 0.89 7.31 -2.39 -0.02 0.87 16 30 H 0.06 0.82 7.67 -2.39 -0.02 0.80 16 31 H 0.08 0.74 7.67 -2.39 -0.02 0.72 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.06 1.31 7.25 -2.39 -0.02 1.30 16 35 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.41 6.97 8.47 -92.71 -0.79 6.19 16 37 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16 40 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.36 18.96 6.50 -92.71 -0.60 18.36 16 44 H 0.25 15.25 6.77 -92.71 -0.63 14.62 16 Total: -1.00 -72.55 347.55 2.10 -70.44 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: -0.28 Total: 28.42 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 4.57 Total: -13.46 kcal Atomic # 7 Polarization: -116.38 SS G_CDS: -4.20 Total: -120.58 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.05 Total: -19.30 kcal Atomic # 14 Polarization: 52.43 SS G_CDS: 2.05 Total: 54.48 kcal Total: -72.55 2.10 -70.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164164147.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.513 kcal (2) G-P(sol) polarization free energy of solvation -72.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds