Wall clock time and date at job start Mon Mar 30 2020 01:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 O 1.21278 * 120.00240 * 120.00385 * 3 2 1 5 5 N 1.34780 * 120.00249 * 300.00184 * 3 2 1 6 6 C 1.46500 * 120.00188 * 180.02562 * 5 3 2 7 7 C 1.53008 * 109.46913 * 179.97438 * 6 5 3 8 8 C 1.52993 * 109.46733 * 180.02562 * 7 6 5 9 9 N 1.46505 * 109.47021 * 179.97438 * 8 7 6 10 10 C 1.36936 * 120.00076 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99880 * 359.97438 * 10 9 8 12 12 C 1.38809 * 120.00032 * 180.02562 * 10 9 8 13 13 N 1.31618 * 120.00196 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00228 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46802 * 59.99320 * 14 12 10 16 16 H 1.48499 * 109.47273 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47047 * 299.99606 * 14 12 10 18 18 C 1.52997 * 109.47127 * 240.00207 * 2 1 3 19 19 C 1.52996 * 109.47131 * 180.02562 * 18 2 1 20 20 C 1.53000 * 109.47518 * 59.99828 * 19 18 2 21 21 C 1.53005 * 109.46632 * 300.00318 * 20 19 18 22 22 C 1.52996 * 109.47245 * 59.99973 * 21 20 19 23 23 H 1.09001 * 109.46801 * 60.00064 * 1 2 3 24 24 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47050 * 299.99952 * 1 2 3 26 26 H 0.96998 * 119.99818 * 359.97438 * 5 3 2 27 27 H 1.09000 * 109.47175 * 299.99877 * 6 5 3 28 28 H 1.09002 * 109.47092 * 59.99835 * 6 5 3 29 29 H 1.09004 * 109.46943 * 299.99518 * 7 6 5 30 30 H 1.08992 * 109.47022 * 59.99591 * 7 6 5 31 31 H 1.09000 * 109.47250 * 299.99921 * 8 7 6 32 32 H 1.09002 * 109.47722 * 59.99994 * 8 7 6 33 33 H 0.96994 * 119.99585 * 359.97438 * 9 8 7 34 34 H 0.96997 * 120.00619 * 180.02562 * 13 12 10 35 35 H 1.09001 * 109.47289 * 299.99953 * 18 2 1 36 36 H 1.09004 * 109.47261 * 59.99697 * 18 2 1 37 37 H 1.09001 * 109.46997 * 299.99574 * 19 18 2 38 38 H 1.08996 * 109.47134 * 180.02562 * 19 18 2 39 39 H 1.08992 * 109.47132 * 180.02562 * 20 19 18 40 40 H 1.08992 * 109.46645 * 59.99985 * 20 19 18 41 41 H 1.09001 * 109.46962 * 299.99689 * 21 20 19 42 42 H 1.08996 * 109.46524 * 179.97438 * 21 20 19 43 43 H 1.09000 * 109.46870 * 179.97438 * 22 21 20 44 44 H 1.09001 * 109.47372 * 59.99967 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.7296 1.8175 0.9095 5 7 1.7067 2.2508 -1.0108 6 6 2.1954 3.6318 -1.0111 7 6 1.6857 4.3529 -2.2606 8 6 2.1967 5.7950 -2.2612 9 7 1.7092 6.4853 -3.4579 10 6 2.0414 7.7959 -3.6755 11 1 2.6624 8.3207 -2.9646 12 6 1.5791 8.4501 -4.8091 13 7 0.8218 7.8107 -5.6751 14 14 2.0316 10.2381 -5.1056 15 1 3.5084 10.3667 -5.1941 16 1 1.4177 10.6999 -6.3764 17 1 1.5289 11.0687 -3.9820 18 6 2.0401 -0.7212 -1.2492 19 6 3.5700 -0.7218 -1.2489 20 6 4.0796 -1.4434 0.0003 21 6 3.5695 -0.7221 1.2495 22 6 2.0395 -0.7216 1.2492 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.1493 1.9334 -1.7385 27 1 1.8325 4.1459 -0.1210 28 1 3.2854 3.6315 -1.0114 29 1 2.0491 3.8388 -3.1504 30 1 0.5958 4.3532 -2.2608 31 1 1.8338 6.3094 -1.3714 32 1 3.2867 5.7944 -2.2613 33 1 1.1518 6.0138 -4.0965 34 1 0.4990 8.2676 -6.4675 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1393 37 1 3.9337 0.3058 -1.2487 38 1 3.9333 -1.2351 -2.1391 39 1 5.1695 -1.4433 0.0007 40 1 3.7159 -2.4708 0.0000 41 1 3.9332 0.3055 1.2497 42 1 3.9322 -1.2364 2.1394 43 1 1.6762 -0.2082 2.1394 44 1 1.6758 -1.7492 1.2490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165761044.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:46 Heat of formation + Delta-G solvation = -61.483716 kcal Electronic energy + Delta-G solvation = -20850.252775 eV Core-core repulsion = 17801.290145 eV Total energy + Delta-G solvation = -3048.962630 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.86026 -37.56412 -35.93330 -34.43450 -33.17238 -31.86440 -30.86705 -29.41164 -26.72710 -25.47924 -23.31087 -22.89279 -22.05961 -21.16344 -20.81261 -19.25330 -17.08333 -16.51808 -16.15223 -15.66160 -15.30694 -14.67537 -14.62278 -14.34080 -14.00206 -13.85197 -13.54562 -13.26596 -13.01529 -12.70060 -12.40158 -12.33605 -12.17215 -12.02987 -11.78922 -11.60786 -11.24320 -10.96331 -10.92462 -10.83347 -10.73094 -10.58224 -10.34624 -10.23426 -10.10594 -9.73130 -9.44748 -8.96668 -8.87616 -6.93828 -5.77346 -3.06329 2.65811 3.18977 3.44610 3.48594 3.49923 4.32710 4.39588 4.49503 4.59188 4.79161 4.94565 4.98237 5.08197 5.18287 5.23361 5.31675 5.32170 5.36050 5.42147 5.50563 5.57422 5.63671 5.64238 5.69958 5.80210 5.81834 5.98449 6.00456 6.02613 6.07551 6.09061 6.13136 6.19654 6.31994 6.38927 6.57628 6.79038 6.83333 7.52816 7.69447 8.25985 8.41697 9.52687 10.09822 10.44615 11.45646 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.039140 B = 0.002973 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.204869 B = 9415.017921 C = 9474.160169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 C 0.524 3.476 4 O -0.538 6.538 5 N -0.726 5.726 6 C 0.122 3.878 7 C -0.137 4.137 8 C 0.156 3.844 9 N -0.734 5.734 10 C -0.241 4.241 11 H 0.071 0.929 12 C -0.014 4.014 13 N -0.935 5.935 14 Si 0.909 3.091 15 H -0.285 1.285 16 H -0.291 1.291 17 H -0.285 1.285 18 C -0.106 4.106 19 C -0.124 4.124 20 C -0.118 4.118 21 C -0.135 4.135 22 C -0.090 4.090 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.399 0.601 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.021 0.979 32 H 0.021 0.979 33 H 0.383 0.617 34 H 0.256 0.744 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.092 0.908 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.860 -21.898 10.992 24.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.084 4.084 3 C 0.310 3.690 4 O -0.415 6.415 5 N -0.378 5.378 6 C -0.001 4.001 7 C -0.175 4.175 8 C 0.028 3.972 9 N -0.378 5.378 10 C -0.372 4.372 11 H 0.088 0.912 12 C -0.210 4.210 13 N -0.584 5.584 14 Si 0.740 3.260 15 H -0.212 1.212 16 H -0.217 1.217 17 H -0.212 1.212 18 C -0.144 4.144 19 C -0.162 4.162 20 C -0.155 4.155 21 C -0.172 4.172 22 C -0.128 4.128 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.233 0.767 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.039 0.961 32 H 0.039 0.961 33 H 0.217 0.783 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.110 0.890 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.434 -21.416 11.660 24.427 hybrid contribution -0.284 0.733 -0.873 1.174 sum 1.151 -20.683 10.788 23.356 Atomic orbital electron populations 1.21867 0.92599 1.02827 1.02664 1.20869 0.96761 0.92494 0.98236 1.20446 0.79863 0.87120 0.81589 1.90617 1.37791 1.77106 1.35980 1.46113 1.53685 1.12720 1.25241 1.21343 0.99333 0.80452 0.99006 1.21938 1.01448 0.97565 0.96584 1.20519 0.96447 0.89079 0.91128 1.42331 1.61549 1.10831 1.23087 1.19208 1.25727 0.87717 1.04560 0.91150 1.24749 1.00433 0.98431 0.97399 1.69646 1.39319 1.36327 1.13088 0.86240 0.77894 0.84790 0.77114 1.21218 1.21657 1.21219 1.21609 0.96193 1.00791 0.95774 1.21574 0.95105 1.01326 0.98175 1.21528 1.00175 0.98941 0.94876 1.21807 0.95239 1.03213 0.96977 1.21344 0.96365 0.99216 0.95889 0.91970 0.91421 0.91969 0.76694 0.91463 0.91500 0.91363 0.91356 0.96086 0.96097 0.78311 0.93448 0.90823 0.91451 0.91856 0.91712 0.92228 0.92383 0.88952 0.92489 0.91473 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.37 37.16 0.31 -0.76 16 2 C -0.08 -0.74 0.62 -155.66 -0.10 -0.83 16 3 C 0.52 6.47 4.97 -10.98 -0.05 6.42 16 4 O -0.54 -8.50 13.66 5.56 0.08 -8.42 16 5 N -0.73 -8.44 5.34 -60.29 -0.32 -8.76 16 6 C 0.12 1.68 5.67 -4.04 -0.02 1.66 16 7 C -0.14 -2.11 5.44 -26.73 -0.15 -2.26 16 8 C 0.16 3.15 6.26 -4.04 -0.03 3.12 16 9 N -0.73 -18.81 5.60 -59.91 -0.34 -19.14 16 10 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 11 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 12 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 13 N -0.94 -28.41 13.06 55.49 0.72 -27.69 16 14 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 C -0.11 -0.84 4.64 -26.73 -0.12 -0.96 16 19 C -0.12 -1.12 5.70 -26.73 -0.15 -1.27 16 20 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 21 C -0.14 -1.37 5.63 -26.73 -0.15 -1.52 16 22 C -0.09 -0.84 4.37 -26.73 -0.12 -0.96 16 23 H 0.06 0.43 7.56 -51.93 -0.39 0.04 16 24 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.40 3.79 7.31 -40.82 -0.30 3.49 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.38 10.19 7.67 -40.82 -0.31 9.88 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.49 7.56 -51.93 -0.39 0.10 16 37 H 0.06 0.70 7.22 -51.93 -0.37 0.33 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.09 1.20 5.51 -51.93 -0.29 0.92 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 342.69 15.07 5.16 5.16 Total: -1.00 -32.13 342.69 -8.64 -40.77 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -7.94 Total: 6.60 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -0.98 Total: -6.07 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.07 Total: -55.59 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.08 Total: -8.42 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.13 -8.64 -40.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165761044.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.715 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds