Wall clock time and date at job start Mon Mar 30 2020 01:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 O 1.21278 * 120.00240 * 120.00385 * 3 2 1 5 5 N 1.34780 * 120.00249 * 300.00184 * 3 2 1 6 6 C 1.46500 * 120.00188 * 180.02562 * 5 3 2 7 7 C 1.53008 * 109.46913 * 179.97438 * 6 5 3 8 8 C 1.52993 * 109.46733 * 180.02562 * 7 6 5 9 9 N 1.46505 * 109.47021 * 179.97438 * 8 7 6 10 10 C 1.36936 * 120.00076 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99880 * 359.97438 * 10 9 8 12 12 C 1.38809 * 120.00032 * 180.02562 * 10 9 8 13 13 N 1.31618 * 120.00196 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00228 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46802 * 59.99320 * 14 12 10 16 16 H 1.48499 * 109.47273 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47047 * 299.99606 * 14 12 10 18 18 C 1.52997 * 109.47127 * 240.00207 * 2 1 3 19 19 C 1.52996 * 109.47131 * 180.02562 * 18 2 1 20 20 C 1.53000 * 109.47518 * 59.99828 * 19 18 2 21 21 C 1.53005 * 109.46632 * 300.00318 * 20 19 18 22 22 C 1.52996 * 109.47245 * 59.99973 * 21 20 19 23 23 H 1.09001 * 109.46801 * 60.00064 * 1 2 3 24 24 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47050 * 299.99952 * 1 2 3 26 26 H 0.96998 * 119.99818 * 359.97438 * 5 3 2 27 27 H 1.09000 * 109.47175 * 299.99877 * 6 5 3 28 28 H 1.09002 * 109.47092 * 59.99835 * 6 5 3 29 29 H 1.09004 * 109.46943 * 299.99518 * 7 6 5 30 30 H 1.08992 * 109.47022 * 59.99591 * 7 6 5 31 31 H 1.09000 * 109.47250 * 299.99921 * 8 7 6 32 32 H 1.09002 * 109.47722 * 59.99994 * 8 7 6 33 33 H 0.96994 * 119.99585 * 359.97438 * 9 8 7 34 34 H 0.96997 * 120.00619 * 180.02562 * 13 12 10 35 35 H 1.09001 * 109.47289 * 299.99953 * 18 2 1 36 36 H 1.09004 * 109.47261 * 59.99697 * 18 2 1 37 37 H 1.09001 * 109.46997 * 299.99574 * 19 18 2 38 38 H 1.08996 * 109.47134 * 180.02562 * 19 18 2 39 39 H 1.08992 * 109.47132 * 180.02562 * 20 19 18 40 40 H 1.08992 * 109.46645 * 59.99985 * 20 19 18 41 41 H 1.09001 * 109.46962 * 299.99689 * 21 20 19 42 42 H 1.08996 * 109.46524 * 179.97438 * 21 20 19 43 43 H 1.09000 * 109.46870 * 179.97438 * 22 21 20 44 44 H 1.09001 * 109.47372 * 59.99967 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.7296 1.8175 0.9095 5 7 1.7067 2.2508 -1.0108 6 6 2.1954 3.6318 -1.0111 7 6 1.6857 4.3529 -2.2606 8 6 2.1967 5.7950 -2.2612 9 7 1.7092 6.4853 -3.4579 10 6 2.0414 7.7959 -3.6755 11 1 2.6624 8.3207 -2.9646 12 6 1.5791 8.4501 -4.8091 13 7 0.8218 7.8107 -5.6751 14 14 2.0316 10.2381 -5.1056 15 1 3.5084 10.3667 -5.1941 16 1 1.4177 10.6999 -6.3764 17 1 1.5289 11.0687 -3.9820 18 6 2.0401 -0.7212 -1.2492 19 6 3.5700 -0.7218 -1.2489 20 6 4.0796 -1.4434 0.0003 21 6 3.5695 -0.7221 1.2495 22 6 2.0395 -0.7216 1.2492 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.1493 1.9334 -1.7385 27 1 1.8325 4.1459 -0.1210 28 1 3.2854 3.6315 -1.0114 29 1 2.0491 3.8388 -3.1504 30 1 0.5958 4.3532 -2.2608 31 1 1.8338 6.3094 -1.3714 32 1 3.2867 5.7944 -2.2613 33 1 1.1518 6.0138 -4.0965 34 1 0.4990 8.2676 -6.4675 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1393 37 1 3.9337 0.3058 -1.2487 38 1 3.9333 -1.2351 -2.1391 39 1 5.1695 -1.4433 0.0007 40 1 3.7159 -2.4708 0.0000 41 1 3.9332 0.3055 1.2497 42 1 3.9322 -1.2364 2.1394 43 1 1.6762 -0.2082 2.1394 44 1 1.6758 -1.7492 1.2490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165761044.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:46 Heat of formation + Delta-G solvation = -82.256592 kcal Electronic energy + Delta-G solvation = -20851.153555 eV Core-core repulsion = 17801.290145 eV Total energy + Delta-G solvation = -3049.863410 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.74096 -38.49101 -37.37914 -35.94939 -34.17825 -33.40508 -31.73408 -30.97864 -27.34615 -27.11128 -24.86944 -23.64337 -23.23757 -22.58480 -21.59732 -20.25543 -19.11188 -17.43777 -17.25250 -16.79986 -16.55551 -16.11364 -15.63902 -15.34266 -15.23864 -15.10419 -14.74710 -14.56942 -14.24221 -13.83829 -13.32577 -13.18742 -13.08068 -12.95187 -12.80198 -12.72540 -12.60415 -12.44507 -12.41835 -12.10987 -12.08640 -11.91442 -11.80541 -11.55983 -11.03490 -10.95089 -10.93090 -10.44468 -10.02931 -9.03537 -7.97553 -5.27073 1.47065 1.50200 1.56408 1.69880 2.20795 2.55838 3.36041 3.59389 3.67677 3.75641 3.80814 4.05008 4.07026 4.24926 4.27801 4.28749 4.41070 4.48018 4.53925 4.63888 4.70925 4.71138 4.73063 4.81722 4.85934 4.89559 4.96487 5.06910 5.13370 5.20655 5.26291 5.29381 5.29479 5.35299 5.38125 5.40270 5.46840 5.47559 5.68386 6.25023 6.59426 7.30776 7.31524 8.05697 8.30150 9.25749 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.039140 B = 0.002973 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.204869 B = 9415.017921 C = 9474.160169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.075 4.075 3 C 0.518 3.482 4 O -0.577 6.577 5 N -0.718 5.718 6 C 0.134 3.866 7 C -0.117 4.117 8 C 0.152 3.848 9 N -0.746 5.746 10 C -0.253 4.253 11 H 0.074 0.926 12 C -0.073 4.073 13 N -0.968 5.968 14 Si 0.975 3.025 15 H -0.278 1.278 16 H -0.292 1.292 17 H -0.278 1.278 18 C -0.103 4.103 19 C -0.126 4.126 20 C -0.115 4.115 21 C -0.137 4.137 22 C -0.090 4.090 23 H 0.069 0.931 24 H 0.090 0.910 25 H 0.051 0.949 26 H 0.412 0.588 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.021 0.979 32 H 0.020 0.980 33 H 0.376 0.624 34 H 0.253 0.747 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.034 0.966 38 H 0.077 0.923 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.051 0.949 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.325 -23.381 10.852 25.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.078 4.078 3 C 0.306 3.694 4 O -0.457 6.457 5 N -0.370 5.370 6 C 0.010 3.990 7 C -0.155 4.155 8 C 0.025 3.975 9 N -0.390 5.390 10 C -0.385 4.385 11 H 0.092 0.908 12 C -0.266 4.266 13 N -0.618 5.618 14 Si 0.804 3.196 15 H -0.204 1.204 16 H -0.218 1.218 17 H -0.204 1.204 18 C -0.141 4.141 19 C -0.164 4.164 20 C -0.152 4.152 21 C -0.174 4.174 22 C -0.128 4.128 23 H 0.088 0.912 24 H 0.109 0.891 25 H 0.070 0.930 26 H 0.248 0.752 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.039 0.961 32 H 0.038 0.962 33 H 0.208 0.792 34 H 0.062 0.938 35 H 0.117 0.883 36 H 0.094 0.906 37 H 0.053 0.947 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.903 -22.920 11.538 25.677 hybrid contribution -0.066 1.167 -0.755 1.392 sum 0.836 -21.753 10.783 24.294 Atomic orbital electron populations 1.21890 0.90938 1.04364 1.02587 1.20903 0.97935 0.89977 0.98979 1.21161 0.79009 0.88428 0.80756 1.90612 1.39522 1.78075 1.37506 1.45987 1.53617 1.11720 1.25715 1.21036 0.98674 0.81601 0.97711 1.21688 1.01590 0.94717 0.97507 1.20669 0.96302 0.91452 0.89030 1.42526 1.61567 1.10404 1.24454 1.19616 1.25244 0.89067 1.04568 0.90810 1.25585 1.00883 1.02684 0.97410 1.69794 1.40650 1.37896 1.13506 0.85193 0.77806 0.79805 0.76846 1.20378 1.21832 1.20373 1.21652 0.95135 1.02105 0.95178 1.21588 0.96175 0.99762 0.98831 1.21516 1.00034 0.99724 0.93944 1.21762 0.96120 1.01382 0.98132 1.21370 0.95590 1.00474 0.95355 0.91169 0.89085 0.92996 0.75181 0.92298 0.92460 0.90820 0.90739 0.96131 0.96195 0.79199 0.93820 0.88337 0.90581 0.94740 0.90430 0.92612 0.90291 0.92423 0.91973 0.93049 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.37 71.98 0.60 -1.14 16 2 C -0.07 -1.24 0.62 -52.93 -0.03 -1.27 16 3 C 0.52 12.64 4.97 87.66 0.44 13.08 16 4 O -0.58 -18.83 13.66 -3.02 -0.04 -18.87 16 5 N -0.72 -16.11 5.34 -463.04 -2.47 -18.58 16 6 C 0.13 3.67 5.67 86.38 0.49 4.16 16 7 C -0.12 -3.51 5.44 30.59 0.17 -3.35 16 8 C 0.15 6.12 6.26 86.38 0.54 6.66 16 9 N -0.75 -38.36 5.60 -343.45 -1.92 -40.29 16 10 C -0.25 -14.41 9.99 84.03 0.84 -13.57 16 11 H 0.07 4.05 7.83 -2.91 -0.02 4.02 16 12 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 13 N -0.97 -59.14 13.06 21.65 0.28 -58.85 16 14 Si 0.98 46.28 29.55 68.60 2.03 48.31 16 15 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 16 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 17 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 18 C -0.10 -1.34 4.64 30.59 0.14 -1.20 16 19 C -0.13 -2.07 5.70 30.59 0.17 -1.90 16 20 C -0.11 -1.84 5.92 30.60 0.18 -1.66 16 21 C -0.14 -2.71 5.63 30.59 0.17 -2.54 16 22 C -0.09 -1.55 4.37 30.59 0.13 -1.41 16 23 H 0.07 0.76 7.56 -2.39 -0.02 0.75 16 24 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.41 7.08 7.31 -92.71 -0.68 6.40 16 27 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.38 20.12 7.67 -92.71 -0.71 19.41 16 34 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 35 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.08 0.87 7.56 -2.38 -0.02 0.86 16 37 H 0.03 0.76 7.22 -2.39 -0.02 0.74 16 38 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.06 1.57 5.51 -2.39 -0.01 1.56 16 42 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.05 1.03 8.10 -2.39 -0.02 1.02 16 44 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -69.53 342.69 1.76 -67.77 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: -0.42 Total: 28.41 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: 4.31 Total: -7.89 kcal Atomic # 7 Polarization: -113.61 SS G_CDS: -4.11 Total: -117.72 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.04 Total: -18.87 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -69.53 1.76 -67.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165761044.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.489 kcal (2) G-P(sol) polarization free energy of solvation -69.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds