Wall clock time and date at job start Mon Mar 30 2020 01:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 110.01785 * 2 1 4 4 C 1.54259 * 110.03030 * 121.39113 * 2 1 3 5 5 C 1.54894 * 104.19808 * 95.67451 * 4 2 1 6 6 C 1.54887 * 102.74695 * 37.93916 * 5 4 2 7 7 H 1.08999 * 110.48680 * 80.87354 * 6 5 4 8 8 C 1.50703 * 110.48517 * 203.38176 * 6 5 4 9 9 O 1.21278 * 119.99985 * 116.76219 * 8 6 5 10 10 N 1.34779 * 119.99944 * 296.75930 * 8 6 5 11 11 C 1.46499 * 119.99872 * 180.02562 * 10 8 6 12 12 C 1.53000 * 109.46840 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 10 14 14 N 1.46500 * 109.47299 * 179.97438 * 13 12 11 15 15 C 1.36936 * 120.00253 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99879 * 0.02562 * 15 14 13 17 17 C 1.38813 * 120.00059 * 179.97438 * 15 14 13 18 18 N 1.31613 * 119.99934 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99909 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47177 * 89.99769 * 19 17 15 21 21 H 1.48498 * 109.47028 * 209.99691 * 19 17 15 22 22 H 1.48505 * 109.47036 * 329.99484 * 19 17 15 23 23 C 1.54088 * 110.11135 * 238.63124 * 2 1 3 24 24 H 1.08999 * 109.47219 * 300.06267 * 1 2 3 25 25 H 1.08998 * 109.47617 * 60.05966 * 1 2 3 26 26 H 1.08997 * 109.47438 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47015 * 179.97438 * 3 2 1 28 28 H 1.09010 * 109.47023 * 299.93823 * 3 2 1 29 29 H 1.08998 * 109.47051 * 59.93420 * 3 2 1 30 30 H 1.09002 * 110.49403 * 336.99335 * 4 2 1 31 31 H 1.09004 * 110.48684 * 214.35231 * 4 2 1 32 32 H 1.09004 * 110.75357 * 279.62802 * 5 4 2 33 33 H 1.08997 * 110.75928 * 156.25588 * 5 4 2 34 34 H 0.97000 * 119.99708 * 359.97438 * 10 8 6 35 35 H 1.09002 * 109.47391 * 59.99686 * 11 10 8 36 36 H 1.09001 * 109.46813 * 299.99742 * 11 10 8 37 37 H 1.09001 * 109.47194 * 299.99493 * 12 11 10 38 38 H 1.08992 * 109.47399 * 59.99666 * 12 11 10 39 39 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 40 40 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 41 41 H 0.97003 * 119.99983 * 359.97438 * 14 13 12 42 42 H 0.97005 * 120.00080 * 180.02562 * 18 17 15 43 43 H 1.08999 * 110.15624 * 121.53284 * 23 2 1 44 44 H 1.09003 * 110.00467 * 0.04489 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4375 0.0000 4 6 2.0584 -0.7549 1.2372 5 6 2.3280 -2.1899 0.7201 6 6 2.8874 -1.9410 -0.7026 7 1 3.9445 -1.6794 -0.6566 8 6 2.6836 -3.1568 -1.5696 9 8 1.9735 -3.0900 -2.5504 10 7 3.2906 -4.3183 -1.2548 11 6 3.0930 -5.5000 -2.0979 12 6 3.8862 -6.6751 -1.5228 13 6 3.6803 -7.9091 -2.4036 14 7 4.4403 -9.0342 -1.8534 15 6 4.4083 -10.2526 -2.4775 16 1 3.8231 -10.3840 -3.3757 17 6 5.1289 -11.3185 -1.9564 18 7 5.0985 -12.4894 -2.5566 19 14 6.1416 -11.0910 -0.4033 20 1 5.3039 -11.3993 0.7834 21 1 7.3101 -12.0067 -0.4358 22 1 6.6158 -9.6860 -0.3230 23 6 2.0598 -0.7532 -1.2354 24 1 -0.3633 0.5148 0.8894 25 1 -0.3634 0.5129 -0.8905 26 1 -0.3634 -1.0276 0.0005 27 1 3.1437 1.4271 0.0005 28 1 1.6962 1.9545 -0.8906 29 1 1.6943 1.9551 0.8894 30 1 1.3061 -0.7687 2.0259 31 1 2.9810 -0.2993 1.5968 32 1 1.4030 -2.7649 0.6764 33 1 3.0674 -2.6926 1.3435 34 1 3.8589 -4.3715 -0.4706 35 1 3.4399 -5.2871 -3.1091 36 1 2.0335 -5.7550 -2.1234 37 1 4.9457 -6.4204 -1.4970 38 1 3.5389 -6.8878 -0.5118 39 1 2.6209 -8.1641 -2.4299 40 1 4.0279 -7.6960 -3.4146 41 1 4.9662 -8.9161 -1.0469 42 1 5.6017 -13.2344 -2.1923 43 1 2.6915 -0.0963 -1.8335 44 1 1.2262 -1.1181 -1.8355 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166192267.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:20 Heat of formation + Delta-G solvation = -58.459721 kcal Electronic energy + Delta-G solvation = -20205.309207 eV Core-core repulsion = 17156.477707 eV Total energy + Delta-G solvation = -3048.831500 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.43834 -38.45258 -36.15426 -34.48060 -32.87810 -31.85888 -30.03581 -29.21199 -27.62823 -26.04543 -24.57550 -22.57325 -21.78746 -21.27316 -19.91933 -18.99236 -17.68348 -17.18505 -16.19204 -15.79741 -15.42152 -14.89681 -14.52972 -14.34506 -14.15552 -13.86159 -13.57862 -13.40427 -13.26203 -12.82279 -12.54879 -12.41941 -12.03297 -11.94225 -11.84235 -11.44936 -11.19916 -11.07019 -11.04013 -10.91087 -10.85360 -10.80178 -10.73928 -10.71565 -10.17778 -9.78825 -9.60258 -9.09791 -8.91534 -7.25711 -5.77923 -3.14081 2.56765 3.10899 3.35269 3.37543 3.43467 4.12159 4.16840 4.37861 4.57398 4.74486 4.86275 4.87403 4.94739 5.04305 5.13068 5.19247 5.20421 5.25537 5.33498 5.45890 5.48065 5.50059 5.52621 5.58578 5.65504 5.72668 5.75683 5.80272 5.90249 5.92188 5.93911 5.96139 6.06967 6.13840 6.15746 6.41382 6.67641 6.70801 7.43107 7.98238 8.15857 8.40867 9.19560 9.91634 10.11176 11.40445 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042985 B = 0.002732 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.235393 B =10245.135562 C =10609.099410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.071 4.071 3 C -0.139 4.139 4 C -0.114 4.114 5 C -0.114 4.114 6 C -0.114 4.114 7 H 0.099 0.901 8 C 0.517 3.483 9 O -0.541 6.541 10 N -0.728 5.728 11 C 0.122 3.878 12 C -0.141 4.141 13 C 0.160 3.840 14 N -0.757 5.757 15 C -0.246 4.246 16 H 0.091 0.909 17 C 0.003 3.997 18 N -0.934 5.934 19 Si 0.887 3.113 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.278 1.278 23 C -0.103 4.103 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.400 0.600 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.030 0.970 40 H 0.030 0.970 41 H 0.360 0.640 42 H 0.260 0.740 43 H 0.067 0.933 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.288 28.590 9.166 30.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.071 4.071 3 C -0.196 4.196 4 C -0.152 4.152 5 C -0.152 4.152 6 C -0.136 4.136 7 H 0.117 0.883 8 C 0.303 3.697 9 O -0.418 6.418 10 N -0.379 5.379 11 C -0.002 4.002 12 C -0.180 4.180 13 C 0.033 3.967 14 N -0.403 5.403 15 C -0.375 4.375 16 H 0.109 0.891 17 C -0.193 4.193 18 N -0.582 5.582 19 Si 0.717 3.283 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.141 4.141 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.233 0.767 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.193 0.807 42 H 0.070 0.930 43 H 0.086 0.914 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.866 28.440 8.262 30.191 hybrid contribution 1.156 -0.118 1.456 1.863 sum -4.710 28.321 9.717 30.310 Atomic orbital electron populations 1.21904 0.94212 1.01928 1.01538 1.21234 0.95764 0.95263 0.94888 1.21920 1.00773 0.95296 1.01652 1.22487 1.01088 0.94570 0.97005 1.22484 1.01345 0.97702 0.93644 1.22166 1.02039 0.93810 0.95560 0.88296 1.20557 0.79364 0.84311 0.85509 1.90689 1.38326 1.84630 1.28174 1.46088 1.50627 1.10760 1.30443 1.21336 1.00767 0.83727 0.94391 1.21989 1.00284 0.94995 1.00683 1.20500 0.95616 0.85572 0.95061 1.42690 1.57761 1.08523 1.31298 1.19075 1.24968 0.85511 1.07985 0.89147 1.24697 1.00244 0.95552 0.98803 1.69704 1.46089 1.01161 1.41215 0.86508 0.80373 0.77056 0.84334 1.21069 1.21696 1.20395 1.22262 1.00207 0.94683 0.96933 0.92804 0.92602 0.92473 0.92594 0.92641 0.92757 0.91264 0.91232 0.90880 0.90831 0.76653 0.91257 0.91259 0.91394 0.91366 0.95175 0.95236 0.80699 0.93028 0.91387 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.15 37.16 0.30 -0.68 16 2 C -0.07 -0.50 0.94 -153.28 -0.14 -0.64 16 3 C -0.14 -0.84 8.15 37.16 0.30 -0.53 16 4 C -0.11 -0.71 5.90 -25.07 -0.15 -0.86 16 5 C -0.11 -0.80 6.29 -24.74 -0.16 -0.96 16 6 C -0.11 -0.97 3.25 -90.11 -0.29 -1.26 16 7 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 8 C 0.52 6.18 7.14 -10.98 -0.08 6.11 16 9 O -0.54 -8.68 15.44 5.56 0.09 -8.60 16 10 N -0.73 -7.91 5.52 -60.29 -0.33 -8.24 16 11 C 0.12 1.58 5.67 -4.04 -0.02 1.56 16 12 C -0.14 -2.00 5.44 -26.73 -0.15 -2.15 16 13 C 0.16 3.06 6.26 -4.04 -0.03 3.03 16 14 N -0.76 -18.08 5.41 -59.91 -0.32 -18.40 16 15 C -0.25 -7.05 10.47 -15.06 -0.16 -7.21 16 16 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 17 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 18 N -0.93 -29.56 13.97 55.49 0.78 -28.78 16 19 Si 0.89 22.04 27.74 -169.99 -4.71 17.32 16 20 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 23 C -0.10 -0.91 5.49 -25.50 -0.14 -1.05 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.33 8.14 -51.92 -0.42 -0.09 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.41 7.84 -51.93 -0.41 0.00 16 31 H 0.07 0.39 7.85 -51.93 -0.41 -0.02 16 32 H 0.07 0.60 8.05 -51.93 -0.42 0.18 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.40 3.31 8.47 -40.82 -0.35 2.96 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.36 8.27 5.53 -40.82 -0.23 8.04 16 42 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 43 H 0.07 0.57 7.68 -51.93 -0.40 0.17 16 44 H 0.09 0.96 6.41 -51.93 -0.33 0.63 16 LS Contribution 349.66 15.07 5.27 5.27 Total: -1.00 -33.54 349.66 -8.09 -41.62 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -8.05 Total: 4.48 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -0.80 Total: -4.67 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 0.12 Total: -55.43 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.09 Total: -8.60 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.32 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.54 -8.09 -41.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166192267.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.835 kcal (2) G-P(sol) polarization free energy of solvation -33.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds