Wall clock time and date at job start Mon Mar 30 2020 01:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 110.01785 * 2 1 4 4 C 1.54259 * 110.03030 * 121.39113 * 2 1 3 5 5 C 1.54894 * 104.19808 * 95.67451 * 4 2 1 6 6 C 1.54887 * 102.74695 * 37.93916 * 5 4 2 7 7 H 1.08999 * 110.48680 * 80.87354 * 6 5 4 8 8 C 1.50703 * 110.48517 * 203.38176 * 6 5 4 9 9 O 1.21278 * 119.99985 * 116.76219 * 8 6 5 10 10 N 1.34779 * 119.99944 * 296.75930 * 8 6 5 11 11 C 1.46499 * 119.99872 * 180.02562 * 10 8 6 12 12 C 1.53000 * 109.46840 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 10 14 14 N 1.46500 * 109.47299 * 179.97438 * 13 12 11 15 15 C 1.36936 * 120.00253 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99879 * 0.02562 * 15 14 13 17 17 C 1.38813 * 120.00059 * 179.97438 * 15 14 13 18 18 N 1.31613 * 119.99934 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99909 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47177 * 89.99769 * 19 17 15 21 21 H 1.48498 * 109.47028 * 209.99691 * 19 17 15 22 22 H 1.48505 * 109.47036 * 329.99484 * 19 17 15 23 23 C 1.54088 * 110.11135 * 238.63124 * 2 1 3 24 24 H 1.08999 * 109.47219 * 300.06267 * 1 2 3 25 25 H 1.08998 * 109.47617 * 60.05966 * 1 2 3 26 26 H 1.08997 * 109.47438 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47015 * 179.97438 * 3 2 1 28 28 H 1.09010 * 109.47023 * 299.93823 * 3 2 1 29 29 H 1.08998 * 109.47051 * 59.93420 * 3 2 1 30 30 H 1.09002 * 110.49403 * 336.99335 * 4 2 1 31 31 H 1.09004 * 110.48684 * 214.35231 * 4 2 1 32 32 H 1.09004 * 110.75357 * 279.62802 * 5 4 2 33 33 H 1.08997 * 110.75928 * 156.25588 * 5 4 2 34 34 H 0.97000 * 119.99708 * 359.97438 * 10 8 6 35 35 H 1.09002 * 109.47391 * 59.99686 * 11 10 8 36 36 H 1.09001 * 109.46813 * 299.99742 * 11 10 8 37 37 H 1.09001 * 109.47194 * 299.99493 * 12 11 10 38 38 H 1.08992 * 109.47399 * 59.99666 * 12 11 10 39 39 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 40 40 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 41 41 H 0.97003 * 119.99983 * 359.97438 * 14 13 12 42 42 H 0.97005 * 120.00080 * 180.02562 * 18 17 15 43 43 H 1.08999 * 110.15624 * 121.53284 * 23 2 1 44 44 H 1.09003 * 110.00467 * 0.04489 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4375 0.0000 4 6 2.0584 -0.7549 1.2372 5 6 2.3280 -2.1899 0.7201 6 6 2.8874 -1.9410 -0.7026 7 1 3.9445 -1.6794 -0.6566 8 6 2.6836 -3.1568 -1.5696 9 8 1.9735 -3.0900 -2.5504 10 7 3.2906 -4.3183 -1.2548 11 6 3.0930 -5.5000 -2.0979 12 6 3.8862 -6.6751 -1.5228 13 6 3.6803 -7.9091 -2.4036 14 7 4.4403 -9.0342 -1.8534 15 6 4.4083 -10.2526 -2.4775 16 1 3.8231 -10.3840 -3.3757 17 6 5.1289 -11.3185 -1.9564 18 7 5.0985 -12.4894 -2.5566 19 14 6.1416 -11.0910 -0.4033 20 1 5.3039 -11.3993 0.7834 21 1 7.3101 -12.0067 -0.4358 22 1 6.6158 -9.6860 -0.3230 23 6 2.0598 -0.7532 -1.2354 24 1 -0.3633 0.5148 0.8894 25 1 -0.3634 0.5129 -0.8905 26 1 -0.3634 -1.0276 0.0005 27 1 3.1437 1.4271 0.0005 28 1 1.6962 1.9545 -0.8906 29 1 1.6943 1.9551 0.8894 30 1 1.3061 -0.7687 2.0259 31 1 2.9810 -0.2993 1.5968 32 1 1.4030 -2.7649 0.6764 33 1 3.0674 -2.6926 1.3435 34 1 3.8589 -4.3715 -0.4706 35 1 3.4399 -5.2871 -3.1091 36 1 2.0335 -5.7550 -2.1234 37 1 4.9457 -6.4204 -1.4970 38 1 3.5389 -6.8878 -0.5118 39 1 2.6209 -8.1641 -2.4299 40 1 4.0279 -7.6960 -3.4146 41 1 4.9662 -8.9161 -1.0469 42 1 5.6017 -13.2344 -2.1923 43 1 2.6915 -0.0963 -1.8335 44 1 1.2262 -1.1181 -1.8355 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166192267.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:20 Heat of formation + Delta-G solvation = -81.125469 kcal Electronic energy + Delta-G solvation = -20206.292068 eV Core-core repulsion = 17156.477707 eV Total energy + Delta-G solvation = -3049.814360 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.26925 -39.20497 -37.60886 -35.96229 -34.01279 -33.30226 -31.57703 -29.84933 -28.14065 -27.38212 -25.58354 -24.01547 -22.76783 -22.68203 -20.83766 -19.64441 -19.55548 -18.15941 -17.21216 -16.84603 -16.49072 -16.26288 -15.73866 -15.50283 -15.23720 -14.82370 -14.75494 -14.42205 -14.16737 -13.90776 -13.79618 -13.73336 -13.00412 -12.88873 -12.62769 -12.55864 -12.53205 -12.35634 -12.10318 -12.04684 -12.00988 -11.81414 -11.61959 -11.42265 -11.39815 -11.30200 -10.99006 -10.77559 -10.10663 -9.33307 -8.04092 -5.39447 1.38008 1.43657 1.51024 1.63930 2.18466 2.48643 3.26874 3.51083 3.53470 3.56537 3.78635 4.06053 4.08876 4.22831 4.25205 4.32477 4.33426 4.46348 4.54825 4.63284 4.68472 4.70056 4.70571 4.84276 4.87505 4.94107 4.99305 5.06316 5.14361 5.16103 5.21376 5.24038 5.27073 5.34817 5.40861 5.44167 5.51904 5.59205 5.73408 6.19343 6.57132 7.06100 7.26552 7.80343 8.01721 9.17396 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042985 B = 0.002732 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.235393 B =10245.135562 C =10609.099410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.070 4.070 3 C -0.137 4.137 4 C -0.109 4.109 5 C -0.111 4.111 6 C -0.108 4.108 7 H 0.124 0.876 8 C 0.513 3.487 9 O -0.589 6.589 10 N -0.716 5.716 11 C 0.130 3.870 12 C -0.121 4.121 13 C 0.154 3.846 14 N -0.758 5.758 15 C -0.243 4.243 16 H 0.052 0.948 17 C -0.069 4.069 18 N -0.985 5.985 19 Si 0.964 3.036 20 H -0.275 1.275 21 H -0.296 1.296 22 H -0.245 1.245 23 C -0.105 4.105 24 H 0.065 0.935 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.416 0.584 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.024 0.976 40 H 0.023 0.977 41 H 0.369 0.631 42 H 0.259 0.741 43 H 0.069 0.931 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.813 30.879 12.168 33.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.070 4.070 3 C -0.194 4.194 4 C -0.147 4.147 5 C -0.149 4.149 6 C -0.129 4.129 7 H 0.142 0.858 8 C 0.301 3.699 9 O -0.469 6.469 10 N -0.368 5.368 11 C 0.005 3.995 12 C -0.159 4.159 13 C 0.027 3.973 14 N -0.404 5.404 15 C -0.374 4.374 16 H 0.070 0.930 17 C -0.260 4.260 18 N -0.635 5.635 19 Si 0.790 3.210 20 H -0.201 1.201 21 H -0.223 1.223 22 H -0.169 1.169 23 C -0.143 4.143 24 H 0.084 0.916 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.253 0.747 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.042 0.958 40 H 0.041 0.959 41 H 0.203 0.797 42 H 0.068 0.932 43 H 0.088 0.912 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.388 30.784 11.294 33.083 hybrid contribution 0.595 -0.828 0.391 1.092 sum -3.793 29.956 11.686 32.378 Atomic orbital electron populations 1.21906 0.94687 1.01159 1.01864 1.21235 0.95421 0.95922 0.94466 1.21899 1.01191 0.94408 1.01905 1.22487 1.01947 0.93739 0.96506 1.22502 1.01170 0.98380 0.92804 1.22218 1.03423 0.91686 0.95550 0.85836 1.21225 0.78305 0.85253 0.85148 1.90676 1.40425 1.85419 1.30418 1.45927 1.50507 1.09768 1.30553 1.21069 0.99855 0.84274 0.94294 1.21752 1.01366 0.92656 1.00123 1.20658 0.94508 0.86318 0.95825 1.42647 1.58388 1.07985 1.31404 1.19042 1.23798 0.87689 1.06872 0.93016 1.25656 1.02164 0.95036 1.03138 1.69907 1.47655 1.02368 1.43602 0.85277 0.78014 0.78549 0.79122 1.20143 1.22264 1.16930 1.22258 0.99350 0.95147 0.97569 0.91552 0.93204 0.93791 0.91874 0.93109 0.91833 0.90678 0.89664 0.92430 0.88626 0.74673 0.92354 0.92400 0.89940 0.89817 0.95807 0.95894 0.79709 0.93227 0.91218 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 8.15 71.98 0.59 -1.29 16 2 C -0.07 -0.87 0.94 -51.39 -0.05 -0.92 16 3 C -0.14 -1.34 8.15 71.98 0.59 -0.76 16 4 C -0.11 -1.04 5.90 31.67 0.19 -0.86 16 5 C -0.11 -1.26 6.29 31.89 0.20 -1.06 16 6 C -0.11 -1.60 3.25 -10.47 -0.03 -1.64 16 7 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 8 C 0.51 11.72 7.14 87.66 0.63 12.34 16 9 O -0.59 -19.21 15.44 -3.02 -0.05 -19.26 16 10 N -0.72 -13.99 5.52 -463.05 -2.56 -16.54 16 11 C 0.13 3.20 5.67 86.38 0.49 3.69 16 12 C -0.12 -3.10 5.44 30.59 0.17 -2.94 16 13 C 0.15 5.73 6.26 86.38 0.54 6.27 16 14 N -0.76 -35.19 5.41 -343.45 -1.86 -37.05 16 15 C -0.24 -14.12 10.47 84.03 0.88 -13.24 16 16 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 17 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 18 N -0.99 -63.77 13.97 21.65 0.30 -63.47 16 19 Si 0.96 44.65 27.74 68.60 1.90 46.56 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 22 H -0.25 -9.93 6.52 99.48 0.65 -9.28 16 23 C -0.11 -1.77 5.49 31.39 0.17 -1.60 16 24 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.66 7.84 -2.39 -0.02 0.65 16 31 H 0.08 0.59 7.85 -2.38 -0.02 0.57 16 32 H 0.06 0.85 8.05 -2.39 -0.02 0.83 16 33 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.42 5.38 8.47 -92.71 -0.79 4.59 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.37 15.76 5.53 -92.71 -0.51 15.25 16 42 H 0.26 15.86 8.31 -92.70 -0.77 15.09 16 43 H 0.07 1.11 7.68 -2.39 -0.02 1.09 16 44 H 0.06 1.30 6.41 -2.39 -0.02 1.28 16 Total: -1.00 -74.72 349.66 2.17 -72.55 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -0.39 Total: 22.82 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: 4.82 Total: -5.60 kcal Atomic # 7 Polarization: -112.95 SS G_CDS: -4.11 Total: -117.06 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.05 Total: -19.26 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.90 Total: 46.56 kcal Total: -74.72 2.17 -72.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166192267.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.579 kcal (2) G-P(sol) polarization free energy of solvation -74.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds