Wall clock time and date at job start Mon Mar 30 2020 01:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00296 * 2 1 4 4 H 1.48504 * 109.46743 * 270.00202 * 3 2 1 5 5 H 1.48503 * 109.47000 * 29.99728 * 3 2 1 6 6 H 1.48488 * 109.47022 * 150.00065 * 3 2 1 7 7 C 1.37873 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00436 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00191 * 359.97438 * 7 2 1 10 10 O 1.42903 * 113.25595 * 47.05034 * 9 7 2 11 11 C 1.53510 * 114.17359 * 180.02562 * 9 7 2 12 12 N 1.47472 * 87.93567 * 139.67153 * 11 9 7 13 13 C 1.46906 * 111.00187 * 221.29686 * 12 11 9 14 14 C 1.53000 * 109.47072 * 169.99961 * 13 12 11 15 15 C 1.52996 * 109.47188 * 180.02562 * 14 13 12 16 16 N 1.46899 * 109.47439 * 179.97438 * 15 14 13 17 17 C 1.46851 * 110.99917 * 294.20823 * 16 15 14 18 18 C 1.53037 * 109.52128 * 174.15931 * 17 16 15 19 19 C 1.53109 * 109.27752 * 59.18541 * 18 17 16 20 20 C 1.53121 * 109.15922 * 302.34091 * 19 18 17 21 21 C 1.46844 * 110.99943 * 170.00283 * 16 15 14 22 22 C 1.47474 * 87.83857 * 332.99021 * 12 11 9 23 23 H 0.97007 * 119.99659 * 0.02562 * 1 2 3 24 24 H 0.96699 * 113.99911 * 312.95353 * 10 9 7 25 25 H 1.08999 * 113.47644 * 24.90238 * 11 9 7 26 26 H 1.09004 * 113.52990 * 254.44624 * 11 9 7 27 27 H 1.08993 * 109.47164 * 289.99814 * 13 12 11 28 28 H 1.08996 * 109.46920 * 49.99848 * 13 12 11 29 29 H 1.09002 * 109.46936 * 299.99708 * 14 13 12 30 30 H 1.08996 * 109.47340 * 60.00144 * 14 13 12 31 31 H 1.08999 * 109.47452 * 300.00348 * 15 14 13 32 32 H 1.09012 * 109.47215 * 59.99738 * 15 14 13 33 33 H 1.09003 * 109.46263 * 294.17813 * 17 16 15 34 34 H 1.08997 * 109.45792 * 54.14359 * 17 16 15 35 35 H 1.08994 * 109.50439 * 299.23729 * 18 17 16 36 36 H 1.09002 * 109.49636 * 179.12415 * 18 17 16 37 37 H 1.09003 * 109.52479 * 182.44134 * 19 18 17 38 38 H 1.08997 * 109.53135 * 62.24464 * 19 18 17 39 39 H 1.09005 * 109.50602 * 297.71678 * 20 19 18 40 40 H 1.09002 * 109.50345 * 177.60021 * 20 19 18 41 41 H 1.09004 * 109.46518 * 305.84844 * 21 16 15 42 42 H 1.08992 * 109.46718 * 65.82399 * 21 16 15 43 43 H 1.08998 * 113.48515 * 141.77227 * 22 12 11 44 44 H 1.09001 * 113.47583 * 272.24643 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 8 0.1937 -2.5403 -0.9611 11 6 2.1494 -3.7438 -0.0005 12 7 1.2074 -4.3583 0.9532 13 6 1.9258 -5.0863 2.0078 14 6 0.9422 -5.4950 3.1062 15 6 1.6904 -6.2527 4.2047 16 7 0.7462 -6.6445 5.2596 17 6 0.2061 -5.4647 5.9473 18 6 -0.8777 -5.9006 6.9360 19 6 -0.2735 -6.8743 7.9515 20 6 0.3248 -8.0706 7.2062 21 6 1.3738 -7.5719 6.2097 22 6 0.8553 -2.9967 1.3969 23 1 -0.4850 0.8401 -0.0004 24 1 -0.3707 -1.7551 -0.9586 25 1 3.1389 -3.5651 0.4204 26 1 2.1869 -4.2535 -0.9633 27 1 2.3878 -5.9778 1.5838 28 1 2.6975 -4.4438 2.4317 29 1 0.4802 -4.6035 3.5302 30 1 0.1705 -6.1375 2.6822 31 1 2.1529 -7.1441 3.7811 32 1 2.4620 -5.6097 4.6287 33 1 1.0078 -4.9599 6.4864 34 1 -0.2241 -4.7825 5.2142 35 1 -1.6861 -6.3932 6.3959 36 1 -1.2674 -5.0263 7.4574 37 1 -1.0518 -7.2209 8.6314 38 1 0.5089 -6.3702 8.5187 39 1 -0.4647 -8.5975 6.6703 40 1 0.7942 -8.7468 7.9207 41 1 1.7915 -8.4201 5.6672 42 1 2.1699 -7.0572 6.7476 43 1 -0.2047 -2.8724 1.6180 44 1 1.4994 -2.6185 2.1908 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169626211.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:12 Heat of formation + Delta-G solvation = -24.377246 kcal Electronic energy + Delta-G solvation = -20995.007366 eV Core-core repulsion = 17947.653794 eV Total energy + Delta-G solvation = -3047.353573 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.37008 -38.89052 -35.10591 -33.93306 -32.04995 -31.38640 -30.86385 -27.65974 -25.63574 -24.90835 -23.90081 -23.16711 -21.73722 -20.39219 -19.81979 -18.58816 -17.25806 -16.17397 -15.49157 -15.14138 -14.93275 -14.79996 -14.53852 -14.16000 -14.00891 -13.70329 -13.43835 -13.24762 -12.81224 -12.40307 -12.25983 -11.97593 -11.51294 -11.44903 -11.33069 -11.24788 -11.09974 -10.95013 -10.79655 -10.65334 -10.56728 -10.45834 -10.17522 -10.13383 -9.90407 -9.22784 -8.62800 -8.35902 -8.13887 -7.84884 -6.25976 -4.35662 3.19670 3.26940 3.29609 3.79481 4.25407 4.63580 4.68797 4.75942 4.88174 4.97334 5.07035 5.15814 5.27381 5.35747 5.40601 5.46844 5.52485 5.60573 5.67759 5.70968 5.75318 5.79913 5.85148 5.96424 5.98572 6.05818 6.08105 6.12020 6.21598 6.27590 6.38613 6.52910 6.61823 6.73565 7.05040 7.07701 7.08514 7.22227 7.38564 7.77864 7.98540 8.08732 8.66393 9.34361 9.71402 10.79970 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026942 B = 0.003635 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.030868 B = 7701.703829 C = 8147.939876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.247 3.753 10 O -0.570 6.570 11 C 0.003 3.997 12 N -0.471 5.471 13 C 0.021 3.979 14 C -0.107 4.107 15 C 0.059 3.941 16 N -0.537 5.537 17 C 0.051 3.949 18 C -0.117 4.117 19 C -0.121 4.121 20 C -0.116 4.116 21 C 0.055 3.945 22 C -0.019 4.019 23 H 0.271 0.729 24 H 0.390 0.610 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.032 0.968 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.030 0.970 33 H 0.030 0.970 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.029 0.971 43 H 0.067 0.933 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.407 -11.419 13.547 17.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.573 4.573 8 H 0.084 0.916 9 C 0.205 3.795 10 O -0.382 6.382 11 C -0.126 4.126 12 N -0.193 5.193 13 C -0.109 4.109 14 C -0.145 4.145 15 C -0.070 4.070 16 N -0.262 5.262 17 C -0.077 4.077 18 C -0.155 4.155 19 C -0.159 4.159 20 C -0.154 4.154 21 C -0.073 4.073 22 C -0.148 4.148 23 H 0.082 0.918 24 H 0.245 0.755 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.050 0.950 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.047 0.953 43 H 0.085 0.915 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.608 -12.610 12.987 18.112 hybrid contribution 1.631 2.314 1.048 3.019 sum 2.239 -10.296 14.036 17.551 Atomic orbital electron populations 1.69300 1.06100 1.27783 1.50684 1.25063 0.94986 0.99656 0.93440 0.86403 0.79736 0.82369 0.78388 1.20287 1.20946 1.19771 1.21599 0.93658 0.90642 1.51393 0.91641 1.19364 0.85102 0.90580 0.84474 1.86030 1.45234 1.48067 1.58888 1.24057 0.95244 0.96540 0.96758 1.68921 1.26835 1.13760 1.09777 1.22578 0.95660 0.98950 0.93675 1.21473 0.98671 1.00077 0.94318 1.22095 0.93331 0.99226 0.92301 1.61904 1.36145 1.15522 1.12642 1.22164 0.96924 0.92092 0.96534 1.21586 0.98313 0.99077 0.96525 1.21582 1.00042 0.96583 0.97702 1.21583 0.98884 0.97548 0.97406 1.22069 0.95362 0.96167 0.93686 1.24628 1.00629 0.87913 1.01668 0.91840 0.75476 0.91994 0.91176 0.91757 0.94985 0.91934 0.90601 0.90911 0.95183 0.95191 0.89998 0.91014 0.91637 0.91971 0.92487 0.91061 0.91830 0.90910 0.95269 0.91475 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.25 11.02 55.43 0.61 -23.64 16 2 C 0.07 1.86 5.39 -17.82 -0.10 1.77 16 3 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.53 -14.41 8.68 -34.44 -0.30 -14.71 16 8 H 0.07 1.72 7.81 -52.48 -0.41 1.31 16 9 C 0.25 6.37 1.57 -91.24 -0.14 6.23 16 10 O -0.57 -15.79 13.54 -35.23 -0.48 -16.26 16 11 C 0.00 0.06 7.12 -7.56 -0.05 0.01 16 12 N -0.47 -10.08 6.41 -244.66 -1.57 -11.65 16 13 C 0.02 0.36 4.82 -3.82 -0.02 0.34 16 14 C -0.11 -1.65 5.25 -26.73 -0.14 -1.79 16 15 C 0.06 0.75 4.96 -3.83 -0.02 0.73 16 16 N -0.54 -6.58 4.66 -234.67 -1.09 -7.67 16 17 C 0.05 0.60 5.29 -3.83 -0.02 0.58 16 18 C -0.12 -1.18 6.09 -26.66 -0.16 -1.34 16 19 C -0.12 -1.07 6.00 -26.61 -0.16 -1.23 16 20 C -0.12 -1.03 6.09 -26.65 -0.16 -1.19 16 21 C 0.06 0.56 5.46 -3.84 -0.02 0.54 16 22 C -0.02 -0.45 6.42 -7.55 -0.05 -0.50 16 23 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 24 H 0.39 10.91 6.33 45.56 0.29 11.20 16 25 H 0.06 1.30 7.72 -51.93 -0.40 0.90 16 26 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.03 0.55 7.56 -51.93 -0.39 0.16 16 29 H 0.06 1.03 5.95 -51.93 -0.31 0.72 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.07 0.87 7.99 -51.93 -0.41 0.45 16 32 H 0.03 0.39 8.12 -51.92 -0.42 -0.03 16 33 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 1.07 6.21 -51.93 -0.32 0.75 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.69 8.02 -51.93 -0.42 0.28 16 42 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 44 H 0.06 1.29 7.66 -51.93 -0.40 0.90 16 LS Contribution 339.04 15.07 5.11 5.11 Total: -1.00 -27.78 339.04 -11.19 -38.97 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -7.41 Total: 10.29 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -1.34 Total: -10.55 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: -2.05 Total: -42.96 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.48 Total: -16.26 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.78 -11.19 -38.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169626211.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.593 kcal (2) G-P(sol) polarization free energy of solvation -27.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds