Wall clock time and date at job start Mon Mar 30 2020 01:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00296 * 2 1 4 4 H 1.48504 * 109.46743 * 270.00202 * 3 2 1 5 5 H 1.48503 * 109.47000 * 29.99728 * 3 2 1 6 6 H 1.48488 * 109.47022 * 150.00065 * 3 2 1 7 7 C 1.37873 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00436 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00191 * 359.97438 * 7 2 1 10 10 O 1.42903 * 113.25595 * 47.05034 * 9 7 2 11 11 C 1.53510 * 114.17359 * 180.02562 * 9 7 2 12 12 N 1.47472 * 87.93567 * 139.67153 * 11 9 7 13 13 C 1.46906 * 111.00187 * 221.29686 * 12 11 9 14 14 C 1.53000 * 109.47072 * 169.99961 * 13 12 11 15 15 C 1.52996 * 109.47188 * 180.02562 * 14 13 12 16 16 N 1.46899 * 109.47439 * 179.97438 * 15 14 13 17 17 C 1.46851 * 110.99917 * 294.20823 * 16 15 14 18 18 C 1.53037 * 109.52128 * 174.15931 * 17 16 15 19 19 C 1.53109 * 109.27752 * 59.18541 * 18 17 16 20 20 C 1.53121 * 109.15922 * 302.34091 * 19 18 17 21 21 C 1.46844 * 110.99943 * 170.00283 * 16 15 14 22 22 C 1.47474 * 87.83857 * 332.99021 * 12 11 9 23 23 H 0.97007 * 119.99659 * 0.02562 * 1 2 3 24 24 H 0.96699 * 113.99911 * 312.95353 * 10 9 7 25 25 H 1.08999 * 113.47644 * 24.90238 * 11 9 7 26 26 H 1.09004 * 113.52990 * 254.44624 * 11 9 7 27 27 H 1.08993 * 109.47164 * 289.99814 * 13 12 11 28 28 H 1.08996 * 109.46920 * 49.99848 * 13 12 11 29 29 H 1.09002 * 109.46936 * 299.99708 * 14 13 12 30 30 H 1.08996 * 109.47340 * 60.00144 * 14 13 12 31 31 H 1.08999 * 109.47452 * 300.00348 * 15 14 13 32 32 H 1.09012 * 109.47215 * 59.99738 * 15 14 13 33 33 H 1.09003 * 109.46263 * 294.17813 * 17 16 15 34 34 H 1.08997 * 109.45792 * 54.14359 * 17 16 15 35 35 H 1.08994 * 109.50439 * 299.23729 * 18 17 16 36 36 H 1.09002 * 109.49636 * 179.12415 * 18 17 16 37 37 H 1.09003 * 109.52479 * 182.44134 * 19 18 17 38 38 H 1.08997 * 109.53135 * 62.24464 * 19 18 17 39 39 H 1.09005 * 109.50602 * 297.71678 * 20 19 18 40 40 H 1.09002 * 109.50345 * 177.60021 * 20 19 18 41 41 H 1.09004 * 109.46518 * 305.84844 * 21 16 15 42 42 H 1.08992 * 109.46718 * 65.82399 * 21 16 15 43 43 H 1.08998 * 113.48515 * 141.77227 * 22 12 11 44 44 H 1.09001 * 113.47583 * 272.24643 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 8 0.1937 -2.5403 -0.9611 11 6 2.1494 -3.7438 -0.0005 12 7 1.2074 -4.3583 0.9532 13 6 1.9258 -5.0863 2.0078 14 6 0.9422 -5.4950 3.1062 15 6 1.6904 -6.2527 4.2047 16 7 0.7462 -6.6445 5.2596 17 6 0.2061 -5.4647 5.9473 18 6 -0.8777 -5.9006 6.9360 19 6 -0.2735 -6.8743 7.9515 20 6 0.3248 -8.0706 7.2062 21 6 1.3738 -7.5719 6.2097 22 6 0.8553 -2.9967 1.3969 23 1 -0.4850 0.8401 -0.0004 24 1 -0.3707 -1.7551 -0.9586 25 1 3.1389 -3.5651 0.4204 26 1 2.1869 -4.2535 -0.9633 27 1 2.3878 -5.9778 1.5838 28 1 2.6975 -4.4438 2.4317 29 1 0.4802 -4.6035 3.5302 30 1 0.1705 -6.1375 2.6822 31 1 2.1529 -7.1441 3.7811 32 1 2.4620 -5.6097 4.6287 33 1 1.0078 -4.9599 6.4864 34 1 -0.2241 -4.7825 5.2142 35 1 -1.6861 -6.3932 6.3959 36 1 -1.2674 -5.0263 7.4574 37 1 -1.0518 -7.2209 8.6314 38 1 0.5089 -6.3702 8.5187 39 1 -0.4647 -8.5975 6.6703 40 1 0.7942 -8.7468 7.9207 41 1 1.7915 -8.4201 5.6672 42 1 2.1699 -7.0572 6.7476 43 1 -0.2047 -2.8724 1.6180 44 1 1.4994 -2.6185 2.1908 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169626211.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:12 Heat of formation + Delta-G solvation = -44.979451 kcal Electronic energy + Delta-G solvation = -20995.900745 eV Core-core repulsion = 17947.653794 eV Total energy + Delta-G solvation = -3048.246951 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.01286 -39.94058 -36.68388 -35.31958 -34.10616 -32.61897 -31.73423 -29.31652 -27.20316 -26.73389 -25.15780 -24.02374 -23.06263 -21.67472 -20.63692 -20.49453 -19.24625 -17.22517 -17.14763 -16.72385 -16.56397 -15.97146 -15.75213 -15.44061 -15.32332 -14.94596 -14.79000 -14.33283 -14.00116 -13.85130 -13.80242 -13.38071 -13.21757 -12.92119 -12.86147 -12.56319 -12.47441 -12.26498 -12.15511 -12.08848 -11.93129 -11.66611 -11.53536 -11.25289 -11.21086 -11.05672 -10.63528 -10.08682 -9.66629 -9.29664 -8.26190 -6.44318 1.41783 1.43453 1.53625 2.36336 2.83554 2.94653 3.27972 3.78479 3.87513 3.93469 4.01346 4.04392 4.17666 4.21087 4.26324 4.35724 4.43103 4.47462 4.52001 4.56991 4.58510 4.66890 4.69042 4.72169 4.84211 4.89966 4.93305 5.03655 5.06678 5.13076 5.16488 5.21536 5.27185 5.29616 5.39013 5.47185 5.50556 5.74374 5.95810 6.10171 6.18480 6.36224 6.61638 7.28875 7.55373 8.79141 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026942 B = 0.003635 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.030868 B = 7701.703829 C = 8147.939876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.025 3.975 3 Si 0.970 3.030 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.559 4.559 8 H 0.066 0.934 9 C 0.217 3.783 10 O -0.583 6.583 11 C 0.012 3.988 12 N -0.477 5.477 13 C 0.022 3.978 14 C -0.096 4.096 15 C 0.067 3.933 16 N -0.548 5.548 17 C 0.050 3.950 18 C -0.116 4.116 19 C -0.119 4.119 20 C -0.114 4.114 21 C 0.053 3.947 22 C -0.005 4.005 23 H 0.275 0.725 24 H 0.383 0.617 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.036 0.964 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.031 0.969 33 H 0.029 0.971 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.031 0.969 43 H 0.046 0.954 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.604 -12.088 14.862 19.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.174 4.174 3 Si 0.795 3.205 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.597 4.597 8 H 0.084 0.916 9 C 0.176 3.824 10 O -0.395 6.395 11 C -0.117 4.117 12 N -0.199 5.199 13 C -0.107 4.107 14 C -0.135 4.135 15 C -0.061 4.061 16 N -0.273 5.273 17 C -0.078 4.078 18 C -0.154 4.154 19 C -0.157 4.157 20 C -0.152 4.152 21 C -0.075 4.075 22 C -0.134 4.134 23 H 0.085 0.915 24 H 0.238 0.762 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.103 0.897 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.049 0.951 43 H 0.065 0.935 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.810 -13.303 14.311 19.623 hybrid contribution 1.231 2.479 0.632 2.840 sum 3.042 -10.824 14.943 18.700 Atomic orbital electron populations 1.69380 1.07290 1.28705 1.50744 1.25851 0.95820 1.02881 0.92861 0.85371 0.78588 0.78164 0.78395 1.19976 1.20454 1.19122 1.21860 0.93882 0.91677 1.52256 0.91554 1.19760 0.85485 0.91902 0.85261 1.86010 1.45812 1.47806 1.59913 1.23974 0.95476 0.94932 0.97286 1.68840 1.27541 1.12665 1.10875 1.22648 0.95814 0.99125 0.93094 1.21341 0.98133 0.99470 0.94526 1.21971 0.92985 0.99400 0.91793 1.61907 1.36355 1.15799 1.13264 1.22154 0.97362 0.91919 0.96396 1.21580 0.97509 0.99788 0.96475 1.21580 1.00474 0.96192 0.97426 1.21587 0.98430 0.97751 0.97394 1.22170 0.95784 0.95858 0.93662 1.24354 0.99270 0.89318 1.00490 0.91546 0.76188 0.90452 0.91123 0.89724 0.94596 0.93572 0.91763 0.89502 0.95096 0.95322 0.91974 0.91817 0.90892 0.90591 0.92181 0.91669 0.89857 0.90075 0.95089 0.93544 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.22 11.02 21.45 0.24 -49.98 16 2 C 0.03 1.35 5.39 84.65 0.46 1.80 16 3 Si 0.97 41.61 29.54 68.60 2.03 43.64 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 7 C -0.56 -30.20 8.68 25.60 0.22 -29.98 16 8 H 0.07 3.47 7.81 -2.91 -0.02 3.45 16 9 C 0.22 11.33 1.57 -11.19 -0.02 11.31 16 10 O -0.58 -33.04 13.54 -148.98 -2.02 -35.06 16 11 C 0.01 0.54 7.12 83.57 0.60 1.13 16 12 N -0.48 -20.25 6.41 -928.34 -5.95 -26.21 16 13 C 0.02 0.74 4.82 86.30 0.42 1.16 16 14 C -0.10 -2.92 5.25 30.59 0.16 -2.76 16 15 C 0.07 1.62 4.96 86.30 0.43 2.05 16 16 N -0.55 -12.77 4.66 -896.36 -4.17 -16.95 16 17 C 0.05 1.16 5.29 86.33 0.46 1.62 16 18 C -0.12 -2.22 6.09 30.64 0.19 -2.03 16 19 C -0.12 -1.85 6.00 30.67 0.18 -1.66 16 20 C -0.11 -1.75 6.09 30.65 0.19 -1.57 16 21 C 0.05 0.97 5.46 86.33 0.47 1.44 16 22 C 0.00 -0.22 6.42 83.57 0.54 0.32 16 23 H 0.27 14.09 8.31 -92.70 -0.77 13.32 16 24 H 0.38 22.15 6.33 -74.06 -0.47 21.68 16 25 H 0.08 3.16 7.72 -2.39 -0.02 3.14 16 26 H 0.07 3.10 8.14 -2.38 -0.02 3.08 16 27 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.04 1.18 7.56 -2.39 -0.02 1.16 16 29 H 0.05 1.54 5.95 -2.39 -0.01 1.53 16 30 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.09 1.87 7.99 -2.39 -0.02 1.85 16 32 H 0.03 0.75 8.12 -2.38 -0.02 0.73 16 33 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 1.67 6.21 -2.39 -0.01 1.66 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.08 1.35 8.02 -2.38 -0.02 1.33 16 42 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.06 2.65 7.66 -2.39 -0.02 2.63 16 Total: -1.00 -58.78 339.04 -5.12 -63.89 By element: Atomic # 1 Polarization: 37.36 SS G_CDS: 0.48 Total: 37.85 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: 4.28 Total: -17.18 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -9.89 Total: -93.14 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -2.02 Total: -35.06 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -58.78 -5.12 -63.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169626211.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.912 kcal (2) G-P(sol) polarization free energy of solvation -58.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds