Wall clock time and date at job start Mon Mar 30 2020 01:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53110 * 109.52462 * 2 1 4 4 C 1.53041 * 109.27780 * 177.62080 * 3 2 1 5 5 N 1.46843 * 109.52318 * 300.82249 * 4 3 2 6 6 C 1.46900 * 110.99905 * 185.83828 * 5 4 3 7 7 C 1.53004 * 109.47302 * 169.99955 * 6 5 4 8 8 N 1.46900 * 109.47302 * 180.02562 * 7 6 5 9 9 C 1.47964 * 110.99873 * 169.99927 * 8 7 6 10 10 C 1.53936 * 86.17896 * 222.41598 * 9 8 7 11 11 O 1.42894 * 113.73695 * 269.25386 * 10 9 8 12 12 C 1.50710 * 113.72850 * 138.07690 * 10 9 8 13 13 H 1.07993 * 120.00160 * 6.89305 * 12 10 9 14 14 C 1.37874 * 119.99500 * 186.88767 * 12 10 9 15 15 N 1.31522 * 119.99594 * 178.34163 * 14 12 10 16 16 Si 1.86798 * 120.00325 * 358.34373 * 14 12 10 17 17 H 1.48495 * 109.47265 * 269.99805 * 16 14 12 18 18 H 1.48505 * 109.47143 * 29.99904 * 16 14 12 19 19 H 1.48499 * 109.47179 * 149.99934 * 16 14 12 20 20 C 1.48192 * 111.06814 * 70.56901 * 8 7 6 21 21 C 1.46847 * 111.20182 * 61.74112 * 5 4 3 22 22 C 1.53032 * 109.52067 * 298.25879 * 21 5 4 23 23 H 1.09005 * 109.46655 * 60.00171 * 1 2 3 24 24 H 1.09002 * 109.47654 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47155 * 300.00250 * 1 2 3 26 26 H 1.09001 * 109.52469 * 239.87138 * 2 1 3 27 27 H 1.09003 * 109.50378 * 57.68417 * 3 2 1 28 28 H 1.08994 * 109.53934 * 297.58225 * 3 2 1 29 29 H 1.08997 * 109.46211 * 180.80720 * 4 3 2 30 30 H 1.09003 * 109.45283 * 60.83265 * 4 3 2 31 31 H 1.09002 * 109.47293 * 50.00390 * 6 5 4 32 32 H 1.08992 * 109.47435 * 289.99822 * 6 5 4 33 33 H 1.09003 * 109.47143 * 59.99481 * 7 6 5 34 34 H 1.09004 * 109.47116 * 300.00427 * 7 6 5 35 35 H 1.09002 * 113.75665 * 108.09615 * 9 8 7 36 36 H 1.09000 * 113.75903 * 336.73679 * 9 8 7 37 37 H 0.96694 * 114.00278 * 162.48386 * 11 10 9 38 38 H 0.96996 * 120.00167 * 358.20463 * 15 14 12 39 39 H 1.08996 * 113.75836 * 23.23806 * 20 8 7 40 40 H 1.09005 * 113.81861 * 251.80777 * 20 8 7 41 41 H 1.09002 * 109.45851 * 58.27057 * 21 5 4 42 42 H 1.08998 * 109.46764 * 178.24160 * 21 5 4 43 43 H 1.09001 * 109.50660 * 299.23436 * 22 21 5 44 44 H 1.09010 * 109.53566 * 179.13487 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4431 0.0000 4 6 3.5709 1.4369 0.0600 5 7 4.0115 0.7423 1.2764 6 6 5.4685 0.8371 1.4383 7 6 5.8618 0.3267 2.8260 8 7 7.3187 0.4220 2.9881 9 6 7.7141 0.1655 4.3906 10 6 8.6855 1.3481 4.2249 11 8 9.9839 0.9660 3.7665 12 6 8.7309 2.2676 5.4181 13 1 8.2020 2.0052 6.3224 14 6 9.4477 3.4436 5.3552 15 7 9.4606 4.2617 6.3850 16 14 10.4003 3.8752 3.8075 17 1 11.7784 3.3309 3.9064 18 1 9.7191 3.2864 2.6265 19 1 10.4608 5.3516 3.6590 20 6 7.7507 1.8349 3.1029 21 6 3.5721 -0.6588 1.2767 22 6 2.0430 -0.7152 1.2530 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8943 -0.5157 -0.8885 27 1 1.6456 1.9696 0.8683 28 1 1.7153 1.9456 -0.9104 29 1 3.9379 2.4631 0.0746 30 1 3.9665 0.9221 -0.8156 31 1 5.7791 1.8765 1.3321 32 1 5.9589 0.2317 0.6761 33 1 5.5512 -0.7127 2.9323 34 1 5.3714 0.9321 3.5883 35 1 8.2108 -0.7935 4.5385 36 1 6.9178 0.3490 5.1120 37 1 10.5055 1.6972 3.4083 38 1 8.9450 4.0502 7.1789 39 1 6.9651 2.5077 3.4468 40 1 8.2766 2.2073 2.2238 41 1 3.9678 -1.1636 0.3953 42 1 3.9399 -1.1548 2.1749 43 1 1.6468 -0.2226 2.1410 44 1 1.7167 -1.7552 1.2377 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169629918.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:08 Heat of formation + Delta-G solvation = -14.706597 kcal Electronic energy + Delta-G solvation = -21278.665979 eV Core-core repulsion = 18231.731757 eV Total energy + Delta-G solvation = -3046.934222 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.64731 -38.95882 -35.45653 -34.30604 -32.48569 -31.09292 -30.42296 -27.96794 -26.03395 -25.39799 -23.66751 -23.22674 -21.87356 -20.38395 -19.80269 -19.06412 -17.83475 -16.23900 -15.77800 -15.37338 -15.12775 -14.79614 -14.54588 -14.38535 -14.18450 -13.75395 -13.43073 -13.06711 -12.88986 -12.52720 -12.33276 -12.18824 -12.08107 -11.84756 -11.68637 -11.33407 -11.26315 -10.98686 -10.86693 -10.69101 -10.49477 -10.40272 -10.28897 -10.06810 -9.53763 -9.33366 -8.70011 -8.51287 -8.31744 -8.04634 -6.56215 -4.32363 3.21528 3.25941 3.42152 3.78632 4.30889 4.55744 4.57311 4.63503 4.73016 4.92983 5.00918 5.15571 5.23398 5.30061 5.32136 5.40523 5.45861 5.47305 5.51956 5.59608 5.71780 5.72179 5.77433 5.79173 5.89396 5.89803 5.92970 5.99305 6.02057 6.08808 6.20818 6.29392 6.31235 6.45943 6.58988 6.90373 6.96069 7.08679 7.11376 7.73976 7.77321 8.19067 8.65566 8.75029 9.42607 10.77864 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033311 B = 0.003883 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.352568 B = 7209.976388 C = 7410.862172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.111 4.111 4 C 0.056 3.944 5 N -0.538 5.538 6 C 0.063 3.937 7 C 0.025 3.975 8 N -0.481 5.481 9 C 0.026 3.974 10 C 0.202 3.798 11 O -0.555 6.555 12 C -0.607 4.607 13 H 0.065 0.935 14 C 0.033 3.967 15 N -0.900 5.900 16 Si 1.038 2.962 17 H -0.276 1.276 18 H -0.269 1.269 19 H -0.285 1.285 20 C -0.033 4.033 21 C 0.053 3.947 22 C -0.111 4.111 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.349 0.651 38 H 0.271 0.729 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.030 0.970 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.641 -6.993 -13.430 21.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.149 4.149 4 C -0.072 4.072 5 N -0.263 5.263 6 C -0.064 4.064 7 C -0.105 4.105 8 N -0.204 5.204 9 C -0.103 4.103 10 C 0.162 3.838 11 O -0.364 6.364 12 C -0.645 4.645 13 H 0.083 0.917 14 C -0.173 4.173 15 N -0.533 5.533 16 Si 0.867 3.133 17 H -0.203 1.203 18 H -0.195 1.195 19 H -0.211 1.211 20 C -0.162 4.162 21 C -0.075 4.075 22 C -0.149 4.149 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.199 0.801 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.049 0.951 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.837 -6.616 -14.021 20.780 hybrid contribution -0.968 -0.515 0.507 1.208 sum -14.806 -7.131 -13.514 21.276 Atomic orbital electron populations 1.21808 0.95199 1.01520 1.01745 1.21187 0.95508 0.96372 0.98265 1.21645 0.94751 0.96386 1.02079 1.22061 0.95626 0.99007 0.90478 1.61858 1.12966 1.14024 1.37487 1.21973 0.85918 1.01466 0.97081 1.22578 0.91129 1.00532 0.96221 1.68547 1.11221 1.17067 1.23577 1.23912 0.97463 1.00008 0.88918 1.20467 0.80301 0.91873 0.91185 1.86454 1.28568 1.37940 1.83434 1.22403 1.36166 1.05902 1.00070 0.91682 1.25813 0.95948 0.92703 1.02827 1.70787 1.39370 1.37963 1.05229 0.84218 0.76912 0.76908 0.75231 1.20293 1.19536 1.21115 1.25121 1.00430 0.89939 1.00681 1.22135 0.95464 0.89023 1.00907 1.21654 0.94862 1.00043 0.98344 0.92865 0.92851 0.92553 0.91740 0.91011 0.91753 0.90737 0.95175 0.90737 0.94356 0.91562 0.93573 0.90378 0.91166 0.80138 0.91932 0.90950 0.90669 0.95146 0.90402 0.91045 0.91775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.20 37.16 0.34 -0.74 16 2 C -0.09 -0.84 2.79 -90.50 -0.25 -1.09 16 3 C -0.11 -1.05 5.38 -26.65 -0.14 -1.19 16 4 C 0.06 0.63 5.46 -3.83 -0.02 0.61 16 5 N -0.54 -7.00 4.66 -234.67 -1.09 -8.09 16 6 C 0.06 0.94 5.02 -3.82 -0.02 0.92 16 7 C 0.02 0.41 4.75 -3.82 -0.02 0.39 16 8 N -0.48 -9.60 6.26 -238.02 -1.49 -11.09 16 9 C 0.03 0.55 7.37 -2.76 -0.02 0.53 16 10 C 0.20 4.94 1.06 -90.83 -0.10 4.84 16 11 O -0.56 -13.74 13.26 -35.23 -0.47 -14.21 16 12 C -0.61 -16.95 9.05 -34.44 -0.31 -17.27 16 13 H 0.07 1.94 8.04 -52.49 -0.42 1.52 16 14 C 0.03 0.94 5.47 -17.82 -0.10 0.84 16 15 N -0.90 -27.09 13.70 55.43 0.76 -26.33 16 16 Si 1.04 23.95 24.77 -169.99 -4.21 19.74 16 17 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.27 -5.60 4.71 56.52 0.27 -5.33 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 C -0.03 -0.71 5.36 -2.63 -0.01 -0.72 16 21 C 0.05 0.61 5.29 -3.84 -0.02 0.59 16 22 C -0.11 -1.07 5.38 -26.65 -0.14 -1.22 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.84 8.02 -51.93 -0.42 0.42 16 30 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 1.16 7.39 -51.93 -0.38 0.78 16 32 H 0.04 0.58 8.12 -51.93 -0.42 0.16 16 33 H 0.07 1.03 6.43 -51.93 -0.33 0.70 16 34 H 0.05 0.82 7.70 -51.93 -0.40 0.42 16 35 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 36 H 0.07 1.47 7.74 -51.93 -0.40 1.07 16 37 H 0.35 7.97 4.33 45.56 0.20 8.16 16 38 H 0.27 8.10 8.71 -40.82 -0.36 7.75 16 39 H 0.07 1.59 7.74 -51.93 -0.40 1.19 16 40 H 0.08 1.59 6.55 -51.93 -0.34 1.25 16 41 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.08 0.93 6.21 -51.93 -0.32 0.61 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 LS Contribution 329.69 15.07 4.97 4.97 Total: -1.00 -29.81 329.69 -9.93 -39.74 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -7.58 Total: 8.76 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -0.81 Total: -13.49 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: -1.82 Total: -45.51 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.47 Total: -14.21 kcal Atomic # 14 Polarization: 23.95 SS G_CDS: -4.21 Total: 19.74 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.81 -9.93 -39.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169629918.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.037 kcal (2) G-P(sol) polarization free energy of solvation -29.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds