Wall clock time and date at job start Mon Mar 30 2020 01:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53110 * 109.52462 * 2 1 4 4 C 1.53041 * 109.27780 * 177.62080 * 3 2 1 5 5 N 1.46843 * 109.52318 * 300.82249 * 4 3 2 6 6 C 1.46900 * 110.99905 * 185.83828 * 5 4 3 7 7 C 1.53004 * 109.47302 * 169.99955 * 6 5 4 8 8 N 1.46900 * 109.47302 * 180.02562 * 7 6 5 9 9 C 1.47964 * 110.99873 * 169.99927 * 8 7 6 10 10 C 1.53936 * 86.17896 * 222.41598 * 9 8 7 11 11 O 1.42894 * 113.73695 * 269.25386 * 10 9 8 12 12 C 1.50710 * 113.72850 * 138.07690 * 10 9 8 13 13 H 1.07993 * 120.00160 * 6.89305 * 12 10 9 14 14 C 1.37874 * 119.99500 * 186.88767 * 12 10 9 15 15 N 1.31522 * 119.99594 * 178.34163 * 14 12 10 16 16 Si 1.86798 * 120.00325 * 358.34373 * 14 12 10 17 17 H 1.48495 * 109.47265 * 269.99805 * 16 14 12 18 18 H 1.48505 * 109.47143 * 29.99904 * 16 14 12 19 19 H 1.48499 * 109.47179 * 149.99934 * 16 14 12 20 20 C 1.48192 * 111.06814 * 70.56901 * 8 7 6 21 21 C 1.46847 * 111.20182 * 61.74112 * 5 4 3 22 22 C 1.53032 * 109.52067 * 298.25879 * 21 5 4 23 23 H 1.09005 * 109.46655 * 60.00171 * 1 2 3 24 24 H 1.09002 * 109.47654 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47155 * 300.00250 * 1 2 3 26 26 H 1.09001 * 109.52469 * 239.87138 * 2 1 3 27 27 H 1.09003 * 109.50378 * 57.68417 * 3 2 1 28 28 H 1.08994 * 109.53934 * 297.58225 * 3 2 1 29 29 H 1.08997 * 109.46211 * 180.80720 * 4 3 2 30 30 H 1.09003 * 109.45283 * 60.83265 * 4 3 2 31 31 H 1.09002 * 109.47293 * 50.00390 * 6 5 4 32 32 H 1.08992 * 109.47435 * 289.99822 * 6 5 4 33 33 H 1.09003 * 109.47143 * 59.99481 * 7 6 5 34 34 H 1.09004 * 109.47116 * 300.00427 * 7 6 5 35 35 H 1.09002 * 113.75665 * 108.09615 * 9 8 7 36 36 H 1.09000 * 113.75903 * 336.73679 * 9 8 7 37 37 H 0.96694 * 114.00278 * 162.48386 * 11 10 9 38 38 H 0.96996 * 120.00167 * 358.20463 * 15 14 12 39 39 H 1.08996 * 113.75836 * 23.23806 * 20 8 7 40 40 H 1.09005 * 113.81861 * 251.80777 * 20 8 7 41 41 H 1.09002 * 109.45851 * 58.27057 * 21 5 4 42 42 H 1.08998 * 109.46764 * 178.24160 * 21 5 4 43 43 H 1.09001 * 109.50660 * 299.23436 * 22 21 5 44 44 H 1.09010 * 109.53566 * 179.13487 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4431 0.0000 4 6 3.5709 1.4369 0.0600 5 7 4.0115 0.7423 1.2764 6 6 5.4685 0.8371 1.4383 7 6 5.8618 0.3267 2.8260 8 7 7.3187 0.4220 2.9881 9 6 7.7141 0.1655 4.3906 10 6 8.6855 1.3481 4.2249 11 8 9.9839 0.9660 3.7665 12 6 8.7309 2.2676 5.4181 13 1 8.2020 2.0052 6.3224 14 6 9.4477 3.4436 5.3552 15 7 9.4606 4.2617 6.3850 16 14 10.4003 3.8752 3.8075 17 1 11.7784 3.3309 3.9064 18 1 9.7191 3.2864 2.6265 19 1 10.4608 5.3516 3.6590 20 6 7.7507 1.8349 3.1029 21 6 3.5721 -0.6588 1.2767 22 6 2.0430 -0.7152 1.2530 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8943 -0.5157 -0.8885 27 1 1.6456 1.9696 0.8683 28 1 1.7153 1.9456 -0.9104 29 1 3.9379 2.4631 0.0746 30 1 3.9665 0.9221 -0.8156 31 1 5.7791 1.8765 1.3321 32 1 5.9589 0.2317 0.6761 33 1 5.5512 -0.7127 2.9323 34 1 5.3714 0.9321 3.5883 35 1 8.2108 -0.7935 4.5385 36 1 6.9178 0.3490 5.1120 37 1 10.5055 1.6972 3.4083 38 1 8.9450 4.0502 7.1789 39 1 6.9651 2.5077 3.4468 40 1 8.2766 2.2073 2.2238 41 1 3.9678 -1.1636 0.3953 42 1 3.9399 -1.1548 2.1749 43 1 1.6468 -0.2226 2.1410 44 1 1.7167 -1.7552 1.2377 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169629918.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:08 Heat of formation + Delta-G solvation = -38.660892 kcal Electronic energy + Delta-G solvation = -21279.704715 eV Core-core repulsion = 18231.731757 eV Total energy + Delta-G solvation = -3047.972958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.18923 -40.05170 -36.91984 -35.59369 -34.65821 -32.05793 -31.58450 -29.23380 -27.58493 -27.15366 -25.01851 -24.20429 -22.92979 -21.72538 -20.92935 -20.57338 -19.93479 -17.75073 -17.27911 -16.92760 -16.42730 -15.88740 -15.78977 -15.36131 -15.26833 -15.10956 -14.88452 -14.64771 -14.13991 -14.03034 -13.57770 -13.51989 -13.26761 -13.07566 -12.79628 -12.70879 -12.42607 -12.24851 -12.12931 -12.07166 -11.85025 -11.55495 -11.52457 -11.20544 -11.15761 -11.05560 -10.80147 -10.43654 -9.79786 -9.31516 -8.79936 -6.59669 1.35909 1.45923 1.60103 2.38927 2.66732 2.85624 3.16113 3.62010 3.71673 3.86343 3.89590 3.90775 4.00228 4.09224 4.16682 4.29355 4.38321 4.44995 4.50698 4.56061 4.57823 4.70473 4.74161 4.78254 4.82516 4.82602 4.84983 4.92611 4.94265 5.01246 5.11951 5.14040 5.23437 5.27085 5.34392 5.34955 5.54200 5.68151 5.86454 6.00068 6.13539 6.21267 6.36825 6.84157 7.25351 8.51340 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033311 B = 0.003883 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.352568 B = 7209.976388 C = 7410.862172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 C -0.107 4.107 4 C 0.054 3.946 5 N -0.548 5.548 6 C 0.073 3.927 7 C 0.029 3.971 8 N -0.473 5.473 9 C 0.028 3.972 10 C 0.186 3.814 11 O -0.561 6.561 12 C -0.616 4.616 13 H 0.027 0.973 14 C -0.017 4.017 15 N -0.931 5.931 16 Si 1.073 2.927 17 H -0.256 1.256 18 H -0.233 1.233 19 H -0.285 1.285 20 C -0.020 4.020 21 C 0.051 3.949 22 C -0.108 4.108 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.034 0.966 31 H 0.066 0.934 32 H 0.039 0.961 33 H 0.080 0.920 34 H 0.033 0.967 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.358 0.642 38 H 0.255 0.745 39 H 0.065 0.935 40 H 0.088 0.912 41 H 0.033 0.967 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.364 -7.833 -16.182 23.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 C -0.145 4.145 4 C -0.073 4.073 5 N -0.274 5.274 6 C -0.055 4.055 7 C -0.100 4.100 8 N -0.196 5.196 9 C -0.101 4.101 10 C 0.146 3.854 11 O -0.370 6.370 12 C -0.654 4.654 13 H 0.045 0.955 14 C -0.216 4.216 15 N -0.566 5.566 16 Si 0.894 3.106 17 H -0.182 1.182 18 H -0.157 1.157 19 H -0.212 1.212 20 C -0.149 4.149 21 C -0.077 4.077 22 C -0.146 4.146 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.052 0.948 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.208 0.792 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.106 0.894 41 H 0.051 0.949 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.584 -7.485 -16.770 23.451 hybrid contribution -0.803 -0.310 1.452 1.688 sum -15.387 -7.794 -15.318 23.069 Atomic orbital electron populations 1.21772 0.94048 1.02110 1.01998 1.21183 0.96438 0.95702 0.97829 1.21634 0.93365 0.97029 1.02460 1.22134 0.96846 0.98621 0.89748 1.61862 1.11557 1.15168 1.38781 1.21790 0.87380 1.00762 0.95578 1.22578 0.88848 1.01356 0.97194 1.68506 1.13503 1.15583 1.22043 1.23860 0.96814 0.99292 0.90090 1.20550 0.81021 0.92861 0.91004 1.86430 1.28768 1.38459 1.83389 1.22591 1.35557 1.06965 1.00316 0.95459 1.27355 0.96591 0.92560 1.05063 1.70922 1.40764 1.39191 1.05731 0.83839 0.76952 0.77069 0.72723 1.18160 1.15747 1.21153 1.24901 0.99430 0.90866 0.99708 1.22187 0.96762 0.88072 1.00642 1.21640 0.93420 1.01023 0.98473 0.92033 0.92124 0.92903 0.91383 0.91948 0.90138 0.91037 0.94763 0.91508 0.94317 0.90133 0.94823 0.89690 0.91335 0.79184 0.93604 0.91655 0.89364 0.94889 0.91092 0.91971 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.20 71.98 0.66 -1.10 16 2 C -0.09 -1.41 2.79 -10.72 -0.03 -1.44 16 3 C -0.11 -1.80 5.38 30.64 0.16 -1.63 16 4 C 0.05 1.11 5.46 86.33 0.47 1.58 16 5 N -0.55 -13.37 4.66 -896.38 -4.17 -17.55 16 6 C 0.07 2.05 5.02 86.30 0.43 2.48 16 7 C 0.03 0.93 4.75 86.30 0.41 1.34 16 8 N -0.47 -18.04 6.26 -910.16 -5.70 -23.74 16 9 C 0.03 1.20 7.37 86.41 0.64 1.83 16 10 C 0.19 8.93 1.06 -10.89 -0.01 8.92 16 11 O -0.56 -26.63 13.26 -148.98 -1.98 -28.60 16 12 C -0.62 -35.07 9.05 25.60 0.23 -34.84 16 13 H 0.03 1.70 8.04 -2.91 -0.02 1.68 16 14 C -0.02 -0.95 5.47 84.65 0.46 -0.49 16 15 N -0.93 -57.59 13.70 21.45 0.29 -57.30 16 16 Si 1.07 46.93 24.77 68.60 1.70 48.62 16 17 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 18 H -0.23 -8.75 4.71 99.48 0.47 -8.28 16 19 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 20 C -0.02 -0.83 5.36 86.37 0.46 -0.37 16 21 C 0.05 1.08 5.29 86.32 0.46 1.54 16 22 C -0.11 -1.86 5.38 30.65 0.16 -1.70 16 23 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 24 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.49 8.02 -2.39 -0.02 1.47 16 30 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 1.97 7.39 -2.39 -0.02 1.95 16 32 H 0.04 1.08 8.12 -2.39 -0.02 1.06 16 33 H 0.08 2.37 6.43 -2.39 -0.02 2.35 16 34 H 0.03 1.17 7.70 -2.38 -0.02 1.16 16 35 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 36 H 0.07 2.89 7.74 -2.39 -0.02 2.87 16 37 H 0.36 15.30 4.33 -74.06 -0.32 14.98 16 38 H 0.25 16.02 8.71 -92.71 -0.81 15.21 16 39 H 0.07 2.81 7.74 -2.39 -0.02 2.79 16 40 H 0.09 3.45 6.55 -2.38 -0.02 3.43 16 41 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.07 1.58 6.21 -2.39 -0.01 1.56 16 43 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -64.42 329.69 -4.98 -69.40 By element: Atomic # 1 Polarization: 32.68 SS G_CDS: 0.36 Total: 33.04 kcal Atomic # 6 Polarization: -28.39 SS G_CDS: 4.52 Total: -23.87 kcal Atomic # 7 Polarization: -89.01 SS G_CDS: -9.58 Total: -98.59 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -1.98 Total: -28.60 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 1.70 Total: 48.62 kcal Total: -64.42 -4.98 -69.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169629918.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.738 kcal (2) G-P(sol) polarization free energy of solvation -64.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds