Wall clock time and date at job start Mon Mar 30 2020 01:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00335 * 2 1 4 4 H 1.48498 * 109.47259 * 270.00240 * 3 2 1 5 5 H 1.48503 * 109.47000 * 29.99818 * 3 2 1 6 6 H 1.48492 * 109.46989 * 149.99743 * 3 2 1 7 7 C 1.37877 * 119.99654 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00313 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99938 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46666 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.46795 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47032 * 300.00298 * 11 10 9 13 13 N 1.46903 * 109.47015 * 179.97438 * 12 11 10 14 14 C 1.47019 * 110.99675 * 56.36545 * 13 12 11 15 15 C 1.53105 * 109.25507 * 182.39461 * 14 13 12 16 16 O 1.43010 * 109.25483 * 303.14755 * 15 14 13 17 17 C 1.43023 * 113.74177 * 58.67237 * 16 15 14 18 18 H 1.09002 * 109.53610 * 61.28279 * 17 16 15 19 19 C 1.52993 * 109.50642 * 181.39181 * 17 16 15 20 20 N 1.46906 * 109.47378 * 299.78217 * 19 17 16 21 21 C 1.47015 * 110.99981 * 179.97438 * 13 12 11 22 22 C 1.52997 * 109.47500 * 59.99665 * 12 11 10 23 23 C 1.52997 * 109.46875 * 299.99808 * 9 7 2 24 24 H 0.97008 * 119.99354 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.46998 * 60.00271 * 9 7 2 26 26 H 1.08992 * 109.47266 * 60.00342 * 10 9 7 27 27 H 1.08992 * 109.47098 * 299.99370 * 10 9 7 28 28 H 1.08999 * 109.47226 * 179.97438 * 11 10 9 29 29 H 1.09000 * 109.46532 * 59.99978 * 11 10 9 30 30 H 1.09004 * 109.46956 * 299.99719 * 12 11 10 31 31 H 1.09002 * 109.50562 * 302.32367 * 14 13 12 32 32 H 1.08997 * 109.51205 * 62.41578 * 14 13 12 33 33 H 1.09003 * 109.50565 * 63.08344 * 15 14 13 34 34 H 1.08999 * 109.50415 * 183.21605 * 15 14 13 35 35 H 1.09004 * 109.46862 * 179.78320 * 19 17 16 36 36 H 1.09000 * 109.47250 * 59.78343 * 19 17 16 37 37 H 1.00902 * 110.99567 * 179.97438 * 20 19 17 38 38 H 1.00901 * 111.00013 * 303.95621 * 20 19 17 39 39 H 1.08996 * 109.50655 * 57.67774 * 21 13 12 40 40 H 1.09003 * 109.50805 * 297.54187 * 21 13 12 41 41 H 1.09004 * 109.46972 * 60.00063 * 22 12 11 42 42 H 1.09005 * 109.47314 * 179.97438 * 22 12 11 43 43 H 1.09004 * 109.47270 * 300.00188 * 23 9 7 44 44 H 1.08999 * 109.47148 * 60.00165 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4800 -4.9872 -0.0020 12 6 0.5998 -5.0683 1.2468 13 7 -0.1352 -6.3402 1.2460 14 6 0.7873 -7.4817 1.1589 15 6 -0.0210 -8.7807 1.1007 16 8 -0.8719 -8.8585 2.2475 17 6 -1.7838 -7.7628 2.3632 18 1 -2.4427 -7.7436 1.4951 19 6 -2.6187 -7.9252 3.6350 20 7 -3.3767 -9.1817 3.5661 21 6 -0.9931 -6.4537 2.4345 22 6 -0.3943 -3.9053 1.2466 23 6 0.3708 -2.5810 1.2472 24 1 -0.4849 0.8402 0.0004 25 1 0.6246 -2.5563 -0.8919 26 1 2.8710 -3.6048 0.8890 27 1 2.8724 -3.6040 -0.8909 28 1 2.1883 -5.8157 -0.0023 29 1 0.8538 -5.0446 -0.8923 30 1 1.2261 -5.0108 2.1371 31 1 1.3951 -7.3906 0.2587 32 1 1.4348 -7.4942 2.0356 33 1 -0.6281 -8.7914 0.1955 34 1 0.6591 -9.6325 1.0937 35 1 -3.3107 -7.0878 3.7246 36 1 -1.9591 -7.9459 4.5025 37 1 -3.9363 -9.3122 4.3955 38 1 -3.9481 -9.2142 2.7350 39 1 -1.6850 -5.6122 2.4656 40 1 -0.3742 -6.4504 3.3318 41 1 -1.0206 -3.9629 0.3563 42 1 -1.0217 -3.9634 2.1361 43 1 0.9972 -2.5238 2.1374 44 1 -0.3374 -1.7524 1.2475 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328218.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:16 Heat of formation + Delta-G solvation = -55.886034 kcal Electronic energy + Delta-G solvation = -21634.858632 eV Core-core repulsion = 18586.138735 eV Total energy + Delta-G solvation = -3048.719896 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.88437 -37.75264 -35.12162 -34.62669 -32.36565 -31.12463 -29.75774 -29.17891 -26.86155 -24.90388 -24.03610 -22.46539 -21.13903 -20.76054 -19.94571 -18.74417 -16.81287 -16.44027 -16.25391 -15.54471 -15.15751 -14.78560 -14.68086 -14.37300 -14.01023 -13.88917 -13.41699 -13.11856 -12.79394 -12.57826 -12.28824 -12.17338 -11.78543 -11.39322 -11.24165 -11.06413 -10.87530 -10.74388 -10.61261 -10.45447 -10.24466 -10.17178 -9.79592 -9.45784 -9.34304 -8.87134 -8.85419 -8.63760 -8.28398 -8.14884 -5.96238 -4.02192 3.30863 3.37697 3.40942 3.70529 3.89241 4.39439 4.45497 4.90097 4.93598 5.06488 5.11347 5.21793 5.26893 5.33079 5.38592 5.44571 5.56584 5.60249 5.70107 5.84240 5.88195 5.92512 6.01465 6.15336 6.30718 6.38186 6.43661 6.52877 6.68385 6.77502 6.86063 6.95173 7.12353 7.16828 7.22360 7.25202 7.29873 7.36575 7.54840 7.77200 8.04786 8.17576 8.49640 9.02027 9.62299 11.09263 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036721 B = 0.004014 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.326577 B = 6974.696079 C = 7553.341909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.053 0.947 9 C 0.049 3.951 10 C -0.107 4.107 11 C -0.108 4.108 12 C 0.091 3.909 13 N -0.533 5.533 14 C 0.013 3.987 15 C 0.064 3.936 16 O -0.368 6.368 17 C 0.097 3.903 18 H 0.062 0.938 19 C 0.069 3.931 20 N -0.842 5.842 21 C 0.022 3.978 22 C -0.107 4.107 23 C -0.108 4.108 24 H 0.259 0.741 25 H 0.026 0.974 26 H 0.045 0.955 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.034 0.966 31 H 0.089 0.911 32 H 0.037 0.963 33 H 0.055 0.945 34 H 0.093 0.907 35 H 0.043 0.957 36 H 0.078 0.922 37 H 0.340 0.660 38 H 0.340 0.660 39 H 0.089 0.911 40 H 0.039 0.961 41 H 0.061 0.939 42 H 0.040 0.960 43 H 0.030 0.970 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.460 -15.421 4.793 16.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.551 4.551 8 H 0.071 0.929 9 C 0.031 3.969 10 C -0.145 4.145 11 C -0.146 4.146 12 C -0.016 4.016 13 N -0.257 5.257 14 C -0.115 4.115 15 C -0.013 4.013 16 O -0.286 6.286 17 C 0.039 3.961 18 H 0.080 0.920 19 C -0.062 4.062 20 N -0.371 5.371 21 C -0.107 4.107 22 C -0.145 4.145 23 C -0.146 4.146 24 H 0.069 0.931 25 H 0.044 0.956 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.108 0.892 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.061 0.939 36 H 0.097 0.903 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.108 0.892 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.183 -15.805 4.494 16.956 hybrid contribution 0.204 1.854 0.589 1.956 sum -3.978 -13.951 5.084 15.372 Atomic orbital electron populations 1.69881 1.05823 1.26226 1.51040 1.24966 0.94836 0.98956 0.95255 0.86655 0.79903 0.83744 0.78047 1.20763 1.21305 1.20024 1.21248 0.92861 0.90833 1.50134 0.92870 1.18649 0.92588 0.91417 0.94283 1.21621 0.98619 0.94252 1.00052 1.21652 0.97554 0.98134 0.97233 1.21746 0.94553 0.87764 0.97581 1.62310 1.22385 1.02490 1.38557 1.22847 0.95244 0.91482 1.01967 1.22646 0.92881 0.96726 0.89074 1.88058 1.50397 1.44564 1.45587 1.22130 0.90691 0.85832 0.97477 0.91968 1.21772 0.96003 0.90675 0.97772 1.58548 1.34246 1.36850 1.07485 1.22759 0.97426 0.98311 0.92191 1.21703 0.97261 0.95162 1.00401 1.21601 0.99592 0.94708 0.98717 0.93131 0.95602 0.93651 0.93274 0.93664 0.91775 0.94782 0.89246 0.94429 0.92633 0.88844 0.93879 0.90344 0.84762 0.84812 0.89237 0.94275 0.92060 0.94100 0.95072 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.28 11.32 55.43 0.63 -24.66 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.51 -14.03 8.56 -34.44 -0.29 -14.32 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.20 2.10 -91.77 -0.19 1.01 16 10 C -0.11 -2.22 5.14 -26.73 -0.14 -2.36 16 11 C -0.11 -1.90 4.86 -26.73 -0.13 -2.03 16 12 C 0.09 1.56 1.94 -67.71 -0.13 1.43 16 13 N -0.53 -8.02 4.60 -226.32 -1.04 -9.06 16 14 C 0.01 0.17 5.25 -3.70 -0.02 0.15 16 15 C 0.06 0.77 7.01 37.21 0.26 1.03 16 16 O -0.37 -5.02 10.34 -35.23 -0.36 -5.38 16 17 C 0.10 1.19 3.01 -26.68 -0.08 1.11 16 18 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 19 C 0.07 0.70 6.48 -3.82 -0.02 0.68 16 20 N -0.84 -7.84 9.50 -10.37 -0.10 -7.94 16 21 C 0.02 0.30 4.62 -3.71 -0.02 0.28 16 22 C -0.11 -2.06 4.97 -26.76 -0.13 -2.19 16 23 C -0.11 -2.50 4.97 -26.76 -0.13 -2.63 16 24 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.04 0.70 6.30 -51.93 -0.33 0.38 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 1.14 6.11 -51.93 -0.32 0.82 16 32 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.34 2.44 9.08 -39.29 -0.36 2.08 16 38 H 0.34 2.80 8.99 -39.29 -0.35 2.45 16 39 H 0.09 1.22 6.18 -51.93 -0.32 0.90 16 40 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.04 0.72 6.35 -51.93 -0.33 0.39 16 43 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 LS Contribution 329.96 15.07 4.97 4.97 Total: -1.00 -29.12 329.96 -9.83 -38.95 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -7.78 Total: 3.14 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -1.13 Total: -16.26 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: -0.51 Total: -41.65 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.36 Total: -5.38 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.12 -9.83 -38.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328218.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.938 kcal (2) G-P(sol) polarization free energy of solvation -29.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds