Wall clock time and date at job start Mon Mar 30 2020 01:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00335 * 2 1 4 4 H 1.48498 * 109.47259 * 270.00240 * 3 2 1 5 5 H 1.48503 * 109.47000 * 29.99818 * 3 2 1 6 6 H 1.48492 * 109.46989 * 149.99743 * 3 2 1 7 7 C 1.37877 * 119.99654 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00313 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99938 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46666 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.46795 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47032 * 300.00298 * 11 10 9 13 13 N 1.46903 * 109.47015 * 179.97438 * 12 11 10 14 14 C 1.47019 * 110.99675 * 56.36545 * 13 12 11 15 15 C 1.53105 * 109.25507 * 182.39461 * 14 13 12 16 16 O 1.43010 * 109.25483 * 303.14755 * 15 14 13 17 17 C 1.43023 * 113.74177 * 58.67237 * 16 15 14 18 18 H 1.09002 * 109.53610 * 61.28279 * 17 16 15 19 19 C 1.52993 * 109.50642 * 181.39181 * 17 16 15 20 20 N 1.46906 * 109.47378 * 299.78217 * 19 17 16 21 21 C 1.47015 * 110.99981 * 179.97438 * 13 12 11 22 22 C 1.52997 * 109.47500 * 59.99665 * 12 11 10 23 23 C 1.52997 * 109.46875 * 299.99808 * 9 7 2 24 24 H 0.97008 * 119.99354 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.46998 * 60.00271 * 9 7 2 26 26 H 1.08992 * 109.47266 * 60.00342 * 10 9 7 27 27 H 1.08992 * 109.47098 * 299.99370 * 10 9 7 28 28 H 1.08999 * 109.47226 * 179.97438 * 11 10 9 29 29 H 1.09000 * 109.46532 * 59.99978 * 11 10 9 30 30 H 1.09004 * 109.46956 * 299.99719 * 12 11 10 31 31 H 1.09002 * 109.50562 * 302.32367 * 14 13 12 32 32 H 1.08997 * 109.51205 * 62.41578 * 14 13 12 33 33 H 1.09003 * 109.50565 * 63.08344 * 15 14 13 34 34 H 1.08999 * 109.50415 * 183.21605 * 15 14 13 35 35 H 1.09004 * 109.46862 * 179.78320 * 19 17 16 36 36 H 1.09000 * 109.47250 * 59.78343 * 19 17 16 37 37 H 1.00902 * 110.99567 * 179.97438 * 20 19 17 38 38 H 1.00901 * 111.00013 * 303.95621 * 20 19 17 39 39 H 1.08996 * 109.50655 * 57.67774 * 21 13 12 40 40 H 1.09003 * 109.50805 * 297.54187 * 21 13 12 41 41 H 1.09004 * 109.46972 * 60.00063 * 22 12 11 42 42 H 1.09005 * 109.47314 * 179.97438 * 22 12 11 43 43 H 1.09004 * 109.47270 * 300.00188 * 23 9 7 44 44 H 1.08999 * 109.47148 * 60.00165 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4800 -4.9872 -0.0020 12 6 0.5998 -5.0683 1.2468 13 7 -0.1352 -6.3402 1.2460 14 6 0.7873 -7.4817 1.1589 15 6 -0.0210 -8.7807 1.1007 16 8 -0.8719 -8.8585 2.2475 17 6 -1.7838 -7.7628 2.3632 18 1 -2.4427 -7.7436 1.4951 19 6 -2.6187 -7.9252 3.6350 20 7 -3.3767 -9.1817 3.5661 21 6 -0.9931 -6.4537 2.4345 22 6 -0.3943 -3.9053 1.2466 23 6 0.3708 -2.5810 1.2472 24 1 -0.4849 0.8402 0.0004 25 1 0.6246 -2.5563 -0.8919 26 1 2.8710 -3.6048 0.8890 27 1 2.8724 -3.6040 -0.8909 28 1 2.1883 -5.8157 -0.0023 29 1 0.8538 -5.0446 -0.8923 30 1 1.2261 -5.0108 2.1371 31 1 1.3951 -7.3906 0.2587 32 1 1.4348 -7.4942 2.0356 33 1 -0.6281 -8.7914 0.1955 34 1 0.6591 -9.6325 1.0937 35 1 -3.3107 -7.0878 3.7246 36 1 -1.9591 -7.9459 4.5025 37 1 -3.9363 -9.3122 4.3955 38 1 -3.9481 -9.2142 2.7350 39 1 -1.6850 -5.6122 2.4656 40 1 -0.3742 -6.4504 3.3318 41 1 -1.0206 -3.9629 0.3563 42 1 -1.0217 -3.9634 2.1361 43 1 0.9972 -2.5238 2.1374 44 1 -0.3374 -1.7524 1.2475 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173328218.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:15 Heat of formation + Delta-G solvation = -76.561726 kcal Electronic energy + Delta-G solvation = -21635.755197 eV Core-core repulsion = 18586.138735 eV Total energy + Delta-G solvation = -3049.616462 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.03186 -39.17193 -36.45260 -35.58959 -34.25424 -32.23109 -31.22889 -30.79703 -28.15222 -26.32783 -25.49358 -23.63959 -22.66381 -21.99560 -21.25451 -20.43417 -18.42820 -17.72201 -17.41907 -16.63115 -16.51525 -16.11011 -15.89834 -15.72645 -15.06218 -14.99400 -14.85746 -14.63893 -14.35820 -13.98828 -13.62732 -13.46652 -13.16312 -12.94682 -12.80431 -12.60007 -12.30718 -12.24096 -12.20937 -12.05644 -11.85516 -11.64864 -11.33006 -11.18760 -10.73370 -10.51385 -10.45638 -10.35461 -9.57212 -9.34844 -8.06830 -6.20714 1.40478 1.41403 1.51261 2.43610 2.68730 2.86207 3.19468 3.55170 3.85321 3.93677 4.00092 4.07238 4.10415 4.19632 4.31050 4.37751 4.47412 4.54696 4.56043 4.61083 4.65934 4.71358 4.77384 4.81924 4.84597 4.92961 4.95913 5.06318 5.08758 5.16354 5.31749 5.39412 5.46683 5.61537 5.69166 6.02454 6.03748 6.05266 6.15180 6.22432 6.36121 6.42413 6.62741 6.91899 7.47186 8.96963 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036721 B = 0.004014 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.326577 B = 6974.696079 C = 7553.341909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 0.951 3.049 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.536 4.536 8 H 0.050 0.950 9 C 0.045 3.955 10 C -0.100 4.100 11 C -0.099 4.099 12 C 0.100 3.900 13 N -0.537 5.537 14 C 0.013 3.987 15 C 0.065 3.935 16 O -0.382 6.382 17 C 0.101 3.899 18 H 0.061 0.939 19 C 0.073 3.927 20 N -0.850 5.850 21 C 0.022 3.978 22 C -0.096 4.096 23 C -0.099 4.099 24 H 0.259 0.741 25 H -0.007 1.007 26 H 0.045 0.955 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.029 0.971 31 H 0.097 0.903 32 H 0.034 0.966 33 H 0.058 0.942 34 H 0.116 0.884 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.352 0.648 38 H 0.346 0.654 39 H 0.088 0.912 40 H 0.035 0.965 41 H 0.049 0.951 42 H 0.056 0.944 43 H 0.024 0.976 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.146 -16.744 5.211 18.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.574 4.574 8 H 0.068 0.932 9 C 0.027 3.973 10 C -0.138 4.138 11 C -0.137 4.137 12 C -0.007 4.007 13 N -0.262 5.262 14 C -0.115 4.115 15 C -0.012 4.012 16 O -0.300 6.300 17 C 0.043 3.957 18 H 0.079 0.921 19 C -0.059 4.059 20 N -0.382 5.382 21 C -0.106 4.106 22 C -0.134 4.134 23 C -0.138 4.138 24 H 0.069 0.931 25 H 0.011 0.989 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.115 0.885 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.134 0.866 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.166 0.834 38 H 0.159 0.841 39 H 0.106 0.894 40 H 0.053 0.947 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.042 0.958 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.872 -17.146 4.915 18.252 hybrid contribution 0.091 2.255 0.446 2.301 sum -3.781 -14.890 5.361 16.271 Atomic orbital electron populations 1.70023 1.07081 1.26944 1.51507 1.25726 0.95671 1.02256 0.94956 0.85669 0.78787 0.79706 0.78172 1.20240 1.20900 1.19404 1.21639 0.92987 0.92457 1.50289 0.93206 1.18625 0.93059 0.92258 0.93364 1.21484 0.97892 0.94427 1.00045 1.21548 0.97796 0.97186 0.97153 1.21495 0.93828 0.88284 0.97127 1.62259 1.22586 1.01977 1.39391 1.22930 0.95169 0.91265 1.02152 1.22756 0.92956 0.96730 0.88730 1.88050 1.50751 1.44976 1.46271 1.22153 0.90395 0.84719 0.98480 0.92080 1.21710 0.96060 0.91695 0.96404 1.58511 1.34822 1.36353 1.08507 1.22796 0.97209 0.99236 0.91387 1.21515 0.97301 0.94012 1.00592 1.21377 0.98791 0.95922 0.97678 0.93143 0.98864 0.93654 0.93209 0.90763 0.92349 0.95277 0.88450 0.94748 0.92379 0.86636 0.92462 0.90904 0.83392 0.84143 0.89414 0.94698 0.93208 0.92517 0.95752 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.23 11.32 21.45 0.24 -52.98 16 2 C 0.01 0.69 5.30 84.65 0.45 1.14 16 3 Si 0.95 43.92 29.54 68.60 2.03 45.95 16 4 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.54 -29.86 8.56 25.60 0.22 -29.64 16 8 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 9 C 0.05 2.28 2.10 -11.54 -0.02 2.26 16 10 C -0.10 -4.12 5.14 30.60 0.16 -3.96 16 11 C -0.10 -3.35 4.86 30.60 0.15 -3.20 16 12 C 0.10 3.35 1.94 44.91 0.09 3.43 16 13 N -0.54 -15.25 4.60 -869.95 -4.00 -19.24 16 14 C 0.01 0.31 5.25 86.32 0.45 0.76 16 15 C 0.07 1.39 7.01 72.02 0.50 1.90 16 16 O -0.38 -9.58 10.34 -148.98 -1.54 -11.12 16 17 C 0.10 2.30 3.01 30.62 0.09 2.39 16 18 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 19 C 0.07 1.35 6.48 86.30 0.56 1.91 16 20 N -0.85 -14.16 9.50 -186.71 -1.77 -15.93 16 21 C 0.02 0.58 4.62 86.31 0.40 0.98 16 22 C -0.10 -3.69 4.97 30.58 0.15 -3.54 16 23 C -0.10 -4.71 4.97 30.58 0.15 -4.55 16 24 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 25 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 26 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.07 2.11 6.30 -2.39 -0.02 2.09 16 29 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.10 2.18 6.11 -2.39 -0.01 2.17 16 32 H 0.03 0.86 8.14 -2.39 -0.02 0.85 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.35 4.35 9.08 -89.69 -0.81 3.54 16 38 H 0.35 5.03 8.99 -89.69 -0.81 4.22 16 39 H 0.09 2.26 6.18 -2.39 -0.01 2.25 16 40 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.06 1.97 6.35 -2.38 -0.02 1.96 16 43 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 Total: -1.00 -62.55 329.96 -2.33 -64.88 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -0.64 Total: 18.59 kcal Atomic # 6 Polarization: -33.49 SS G_CDS: 3.35 Total: -30.14 kcal Atomic # 7 Polarization: -82.63 SS G_CDS: -5.53 Total: -88.16 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -1.54 Total: -11.12 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -62.55 -2.33 -64.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328218.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.678 kcal (2) G-P(sol) polarization free energy of solvation -62.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds