Wall clock time and date at job start Mon Mar 30 2020 01:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86810 * 119.99877 * 2 1 4 4 H 1.48499 * 109.47106 * 240.00148 * 3 2 1 5 5 H 1.48506 * 109.46930 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46841 * 120.00003 * 3 2 1 7 7 C 1.38805 * 120.00349 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00296 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00246 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00627 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47294 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47127 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47127 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.47131 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47131 * 179.97438 * 14 13 12 16 16 N 1.46506 * 109.47289 * 180.02562 * 15 14 13 17 17 C 1.34774 * 120.00072 * 180.02562 * 16 15 14 18 18 O 1.21284 * 120.00066 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.99838 * 180.02562 * 17 16 15 20 20 C 1.53005 * 109.47353 * 180.02562 * 19 17 16 21 21 C 1.52998 * 117.49540 * 243.62143 * 20 19 17 22 22 C 1.52995 * 117.49815 * 174.99941 * 20 19 17 23 23 H 0.97000 * 120.00225 * 359.97438 * 1 2 3 24 24 H 0.97006 * 119.99618 * 0.02562 * 9 7 2 25 25 H 1.09001 * 109.47059 * 60.00276 * 10 9 7 26 26 H 1.09004 * 109.47074 * 300.00232 * 10 9 7 27 27 H 1.09001 * 109.46832 * 60.00150 * 11 10 9 28 28 H 1.09000 * 109.47611 * 300.00447 * 11 10 9 29 29 H 1.08998 * 109.46509 * 60.00429 * 12 11 10 30 30 H 1.09001 * 109.46801 * 300.00272 * 12 11 10 31 31 H 1.09001 * 109.46832 * 60.00321 * 13 12 11 32 32 H 1.09004 * 109.47261 * 300.00303 * 13 12 11 33 33 H 1.09001 * 109.46997 * 60.00426 * 14 13 12 34 34 H 1.08996 * 109.47452 * 300.00000 * 14 13 12 35 35 H 1.09001 * 109.47289 * 60.00050 * 15 14 13 36 36 H 1.09004 * 109.47261 * 300.00306 * 15 14 13 37 37 H 0.97001 * 119.99251 * 0.02562 * 16 15 14 38 38 H 1.09004 * 109.47043 * 299.99952 * 19 17 16 39 39 H 1.09001 * 109.47324 * 59.99585 * 19 17 16 40 40 H 1.09001 * 115.54850 * 29.32494 * 20 19 17 41 41 H 1.08996 * 117.50211 * 359.97438 * 21 20 19 42 42 H 1.09001 * 117.49379 * 145.01626 * 21 20 19 43 43 H 1.09003 * 117.49619 * 214.97098 * 22 20 19 44 44 H 1.08996 * 117.50061 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7466 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8196 -0.0008 12 6 1.8290 -6.1447 -0.0026 13 6 0.8348 -7.3076 -0.0024 14 6 1.5999 -8.6326 -0.0048 15 6 0.6057 -9.7955 -0.0039 16 7 1.3382 -11.0643 -0.0057 17 6 0.6643 -12.2315 -0.0058 18 8 -0.5485 -12.2315 -0.0049 19 6 1.4178 -13.5365 -0.0070 20 6 0.4237 -14.6995 -0.0075 21 6 0.4235 -15.6292 1.2076 22 6 0.9923 -16.1149 -0.1271 23 1 -0.4850 0.8400 0.0004 24 1 0.3556 -2.3880 -0.0005 25 1 2.6855 -3.7149 0.8878 26 1 2.6842 -3.7140 -0.8922 27 1 0.4363 -4.7617 -0.8901 28 1 0.4383 -4.7621 0.8899 29 1 2.4569 -6.2028 0.8865 30 1 2.4544 -6.2019 -0.8936 31 1 0.2073 -7.2492 -0.8917 32 1 0.2091 -7.2505 0.8884 33 1 2.2277 -8.6912 0.8842 34 1 2.2252 -8.6894 -0.8957 35 1 -0.0227 -9.7371 -0.8927 36 1 -0.0194 -9.7385 0.8872 37 1 2.3082 -11.0642 -0.0068 38 1 2.0439 -13.5938 -0.8975 39 1 2.0452 -13.5947 0.8824 40 1 -0.5337 -14.4994 -0.4887 41 1 1.1318 -15.4125 2.0072 42 1 -0.5343 -16.0407 1.5262 43 1 0.4087 -16.8461 -0.6865 44 1 2.0745 -16.2175 -0.2058 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177743607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:45 Heat of formation + Delta-G solvation = -37.780669 kcal Electronic energy + Delta-G solvation = -18898.028299 eV Core-core repulsion = 15850.093510 eV Total energy + Delta-G solvation = -3047.934789 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.11432 -37.62430 -36.72882 -35.37097 -33.94210 -32.00450 -30.52912 -29.40006 -26.75087 -24.09802 -22.79862 -22.39161 -21.63775 -21.07178 -20.64715 -20.20557 -17.53952 -16.95905 -16.43631 -16.29611 -15.69470 -15.31774 -14.63757 -14.55557 -14.40431 -13.80789 -13.46856 -13.37598 -13.23608 -12.71429 -12.64715 -12.34467 -11.94570 -11.88164 -11.70045 -11.35651 -11.18316 -10.90463 -10.79505 -10.71797 -10.71439 -10.48388 -10.42298 -10.25058 -10.10495 -9.93999 -9.62280 -9.37170 -8.82918 -6.87657 -5.72685 -3.01202 2.35037 2.82222 3.39822 3.46293 3.50053 3.51656 4.23560 4.30215 4.48869 4.54742 4.64586 4.69388 4.75321 4.94103 4.98432 5.08894 5.19242 5.22087 5.24617 5.39308 5.40617 5.48374 5.57012 5.64797 5.68902 5.70562 5.74886 5.88011 5.95398 5.96994 6.14061 6.14672 6.34847 6.35493 6.42930 6.49795 6.93051 6.97114 7.16957 7.72440 7.92464 8.46657 9.57155 10.16946 10.51468 11.50350 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.093174 B = 0.001776 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 300.441299 B =15759.574569 C =15938.983403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.735 5.735 10 C 0.152 3.848 11 C -0.127 4.127 12 C -0.113 4.113 13 C -0.116 4.116 14 C -0.130 4.130 15 C 0.116 3.884 16 N -0.733 5.733 17 C 0.512 3.488 18 O -0.538 6.538 19 C -0.111 4.111 20 C -0.142 4.142 21 C -0.179 4.179 22 C -0.181 4.181 23 H 0.255 0.745 24 H 0.383 0.617 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.400 0.600 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.118 0.882 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.903 -31.396 0.228 31.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.087 0.913 9 N -0.379 5.379 10 C 0.025 3.975 11 C -0.165 4.165 12 C -0.151 4.151 13 C -0.155 4.155 14 C -0.168 4.168 15 C -0.007 4.007 16 N -0.385 5.385 17 C 0.298 3.702 18 O -0.415 6.415 19 C -0.151 4.151 20 C -0.161 4.161 21 C -0.215 4.215 22 C -0.218 4.218 23 H 0.065 0.935 24 H 0.217 0.783 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.234 0.766 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.136 0.864 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.141 -31.256 0.230 31.530 hybrid contribution 0.676 1.005 0.026 1.212 sum 4.817 -30.250 0.256 30.633 Atomic orbital electron populations 1.69652 1.05120 1.25713 1.57863 1.24749 0.95539 0.97700 1.03135 0.86252 0.78500 0.83522 0.77825 1.21283 1.21661 1.21290 1.19217 0.91024 0.84315 1.42604 0.91274 1.42388 1.05904 1.00146 1.89477 1.20656 0.93657 0.85725 0.97511 1.21732 0.98892 0.93844 1.02006 1.21499 0.97864 0.93878 1.01874 1.21520 0.98433 0.92869 1.02639 1.21823 0.98237 0.94056 1.02703 1.21450 0.94943 0.81742 1.02562 1.46085 1.10415 1.06042 1.75960 1.20613 0.88309 0.85463 0.75767 1.90710 1.14129 1.87630 1.49013 1.21229 0.98181 0.91289 1.04364 1.22061 1.01004 0.89534 1.03453 1.23040 1.02936 1.03963 0.91610 1.23003 1.00946 0.96988 1.00820 0.93494 0.78332 0.96607 0.96604 0.92092 0.92082 0.92112 0.92112 0.91632 0.91630 0.91317 0.91297 0.91394 0.91411 0.76572 0.88436 0.88770 0.86374 0.88825 0.88700 0.88640 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.96 13.06 55.49 0.72 -28.23 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.24 -6.97 9.99 -15.06 -0.15 -7.13 16 8 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 9 N -0.74 -19.49 5.60 -59.91 -0.34 -19.82 16 10 C 0.15 3.17 6.26 -4.05 -0.03 3.14 16 11 C -0.13 -2.08 5.33 -26.73 -0.14 -2.22 16 12 C -0.11 -1.39 5.21 -26.73 -0.14 -1.53 16 13 C -0.12 -1.18 5.21 -26.73 -0.14 -1.32 16 14 C -0.13 -1.02 5.33 -26.73 -0.14 -1.17 16 15 C 0.12 1.02 5.67 -4.04 -0.02 1.00 16 16 N -0.73 -5.42 5.56 -60.29 -0.33 -5.75 16 17 C 0.51 4.74 7.83 -10.99 -0.09 4.65 16 18 O -0.54 -7.37 15.56 5.55 0.09 -7.29 16 19 C -0.11 -0.65 5.98 -27.88 -0.17 -0.81 16 20 C -0.14 -1.02 5.41 -90.62 -0.49 -1.51 16 21 C -0.18 -1.11 10.18 -26.73 -0.27 -1.38 16 22 C -0.18 -0.97 10.25 -26.73 -0.27 -1.25 16 23 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 24 H 0.38 10.61 7.67 -40.82 -0.31 10.30 16 25 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.40 1.77 8.47 -40.82 -0.35 1.43 16 38 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 0.39 7.88 -51.93 -0.41 -0.02 16 40 H 0.12 1.09 7.31 -51.93 -0.38 0.71 16 41 H 0.09 0.50 8.03 -51.93 -0.42 0.08 16 42 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 364.58 15.07 5.49 5.49 Total: -1.00 -34.12 364.58 -9.71 -43.83 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -8.17 Total: 4.06 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -2.15 Total: -10.07 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: 0.05 Total: -53.81 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: 0.09 Total: -7.29 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.12 -9.71 -43.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177743607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.052 kcal (2) G-P(sol) polarization free energy of solvation -34.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds