Wall clock time and date at job start Mon Mar 30 2020 01:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86810 * 119.99877 * 2 1 4 4 H 1.48499 * 109.47106 * 240.00148 * 3 2 1 5 5 H 1.48506 * 109.46930 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46841 * 120.00003 * 3 2 1 7 7 C 1.38805 * 120.00349 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00296 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00246 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00627 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47294 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47127 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47127 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.47131 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47131 * 179.97438 * 14 13 12 16 16 N 1.46506 * 109.47289 * 180.02562 * 15 14 13 17 17 C 1.34774 * 120.00072 * 180.02562 * 16 15 14 18 18 O 1.21284 * 120.00066 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.99838 * 180.02562 * 17 16 15 20 20 C 1.53005 * 109.47353 * 180.02562 * 19 17 16 21 21 C 1.52998 * 117.49540 * 243.62143 * 20 19 17 22 22 C 1.52995 * 117.49815 * 174.99941 * 20 19 17 23 23 H 0.97000 * 120.00225 * 359.97438 * 1 2 3 24 24 H 0.97006 * 119.99618 * 0.02562 * 9 7 2 25 25 H 1.09001 * 109.47059 * 60.00276 * 10 9 7 26 26 H 1.09004 * 109.47074 * 300.00232 * 10 9 7 27 27 H 1.09001 * 109.46832 * 60.00150 * 11 10 9 28 28 H 1.09000 * 109.47611 * 300.00447 * 11 10 9 29 29 H 1.08998 * 109.46509 * 60.00429 * 12 11 10 30 30 H 1.09001 * 109.46801 * 300.00272 * 12 11 10 31 31 H 1.09001 * 109.46832 * 60.00321 * 13 12 11 32 32 H 1.09004 * 109.47261 * 300.00303 * 13 12 11 33 33 H 1.09001 * 109.46997 * 60.00426 * 14 13 12 34 34 H 1.08996 * 109.47452 * 300.00000 * 14 13 12 35 35 H 1.09001 * 109.47289 * 60.00050 * 15 14 13 36 36 H 1.09004 * 109.47261 * 300.00306 * 15 14 13 37 37 H 0.97001 * 119.99251 * 0.02562 * 16 15 14 38 38 H 1.09004 * 109.47043 * 299.99952 * 19 17 16 39 39 H 1.09001 * 109.47324 * 59.99585 * 19 17 16 40 40 H 1.09001 * 115.54850 * 29.32494 * 20 19 17 41 41 H 1.08996 * 117.50211 * 359.97438 * 21 20 19 42 42 H 1.09001 * 117.49379 * 145.01626 * 21 20 19 43 43 H 1.09003 * 117.49619 * 214.97098 * 22 20 19 44 44 H 1.08996 * 117.50061 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7466 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8196 -0.0008 12 6 1.8290 -6.1447 -0.0026 13 6 0.8348 -7.3076 -0.0024 14 6 1.5999 -8.6326 -0.0048 15 6 0.6057 -9.7955 -0.0039 16 7 1.3382 -11.0643 -0.0057 17 6 0.6643 -12.2315 -0.0058 18 8 -0.5485 -12.2315 -0.0049 19 6 1.4178 -13.5365 -0.0070 20 6 0.4237 -14.6995 -0.0075 21 6 0.4235 -15.6292 1.2076 22 6 0.9923 -16.1149 -0.1271 23 1 -0.4850 0.8400 0.0004 24 1 0.3556 -2.3880 -0.0005 25 1 2.6855 -3.7149 0.8878 26 1 2.6842 -3.7140 -0.8922 27 1 0.4363 -4.7617 -0.8901 28 1 0.4383 -4.7621 0.8899 29 1 2.4569 -6.2028 0.8865 30 1 2.4544 -6.2019 -0.8936 31 1 0.2073 -7.2492 -0.8917 32 1 0.2091 -7.2505 0.8884 33 1 2.2277 -8.6912 0.8842 34 1 2.2252 -8.6894 -0.8957 35 1 -0.0227 -9.7371 -0.8927 36 1 -0.0194 -9.7385 0.8872 37 1 2.3082 -11.0642 -0.0068 38 1 2.0439 -13.5938 -0.8975 39 1 2.0452 -13.5947 0.8824 40 1 -0.5337 -14.4994 -0.4887 41 1 1.1318 -15.4125 2.0072 42 1 -0.5343 -16.0407 1.5262 43 1 0.4087 -16.8461 -0.6865 44 1 2.0745 -16.2175 -0.2058 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177743607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:44 Heat of formation + Delta-G solvation = -59.756403 kcal Electronic energy + Delta-G solvation = -18898.981239 eV Core-core repulsion = 15850.093510 eV Total energy + Delta-G solvation = -3048.887728 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.82056 -38.19964 -37.76232 -36.69053 -35.28792 -33.53838 -31.80393 -30.33754 -28.03060 -25.71449 -23.76850 -23.22018 -22.33758 -22.15262 -21.78763 -20.83554 -19.12113 -18.15133 -17.14787 -17.06508 -16.67046 -16.46737 -16.00677 -15.47695 -15.37608 -15.20817 -14.95394 -14.46674 -14.18510 -13.89786 -13.43258 -13.38124 -13.03879 -12.90302 -12.61809 -12.41586 -12.38545 -12.31740 -12.20547 -12.01083 -11.80850 -11.79858 -11.47782 -11.34792 -11.30792 -10.97147 -10.92795 -10.73629 -10.08680 -9.01921 -7.96384 -5.26257 1.46521 1.50544 1.56847 1.66154 2.20938 2.55753 2.93627 3.36812 3.71287 3.77074 3.79033 4.01037 4.02013 4.06579 4.18462 4.24543 4.29819 4.34387 4.55925 4.59186 4.63943 4.67196 4.77383 4.79435 4.81147 4.87861 4.97879 4.99101 5.05715 5.06585 5.15899 5.27359 5.28804 5.32952 5.36880 5.46700 5.49931 5.53380 5.56315 6.25985 6.59221 7.29436 7.31364 8.08625 8.31462 9.27187 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.093174 B = 0.001776 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 300.441299 B =15759.574569 C =15938.983403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.979 3.021 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.276 1.276 7 C -0.253 4.253 8 H 0.076 0.924 9 N -0.752 5.752 10 C 0.148 3.852 11 C -0.117 4.117 12 C -0.103 4.103 13 C -0.114 4.114 14 C -0.116 4.116 15 C 0.119 3.881 16 N -0.720 5.720 17 C 0.505 3.495 18 O -0.592 6.592 19 C -0.101 4.101 20 C -0.162 4.162 21 C -0.186 4.186 22 C -0.164 4.164 23 H 0.252 0.748 24 H 0.372 0.628 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.418 0.582 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.557 -32.476 0.284 33.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.807 3.193 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.202 1.202 7 C -0.385 4.385 8 H 0.094 0.906 9 N -0.394 5.394 10 C 0.022 3.978 11 C -0.155 4.155 12 C -0.141 4.141 13 C -0.152 4.152 14 C -0.154 4.154 15 C -0.005 4.005 16 N -0.373 5.373 17 C 0.294 3.706 18 O -0.473 6.473 19 C -0.140 4.140 20 C -0.181 4.181 21 C -0.223 4.223 22 C -0.201 4.201 23 H 0.061 0.939 24 H 0.204 0.796 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.255 0.745 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.106 0.894 41 H 0.124 0.876 42 H 0.105 0.895 43 H 0.115 0.885 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.872 -32.368 0.286 33.090 hybrid contribution -0.154 1.292 0.007 1.302 sum 6.717 -31.076 0.292 31.795 Atomic orbital electron populations 1.69822 1.06748 1.26264 1.59344 1.25652 0.96479 1.01375 1.03474 0.85142 0.77175 0.78714 0.78304 1.20202 1.21983 1.20213 1.19671 0.91614 0.85538 1.41661 0.90573 1.42665 1.05681 1.01560 1.89507 1.20880 0.94421 0.85042 0.97481 1.21647 0.98107 0.94453 1.01334 1.21414 0.97903 0.92000 1.02776 1.21458 0.98111 0.93370 1.02310 1.21681 0.97696 0.91962 1.04049 1.21309 0.95169 0.82879 1.01173 1.45976 1.11298 1.05145 1.74834 1.21303 0.87879 0.86879 0.74572 1.90691 1.16600 1.88403 1.51576 1.21254 0.97684 0.88415 1.06637 1.22018 1.00562 0.91147 1.04374 1.23131 1.03136 1.03820 0.92170 1.23083 1.02005 0.95377 0.99660 0.93933 0.79610 0.96256 0.96254 0.92804 0.92796 0.91183 0.91181 0.92079 0.92081 0.89921 0.89896 0.92900 0.92935 0.74477 0.85955 0.86311 0.89431 0.87602 0.89464 0.88549 0.86768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.95 13.06 21.65 0.28 -60.67 16 2 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 3 Si 0.98 46.76 29.55 68.60 2.03 48.78 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.25 -14.66 9.99 84.03 0.84 -13.82 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 9 N -0.75 -40.10 5.60 -343.46 -1.92 -42.02 16 10 C 0.15 6.07 6.26 86.38 0.54 6.61 16 11 C -0.12 -3.77 5.33 30.60 0.16 -3.61 16 12 C -0.10 -2.31 5.21 30.60 0.16 -2.15 16 13 C -0.11 -2.14 5.21 30.59 0.16 -1.98 16 14 C -0.12 -1.55 5.33 30.59 0.16 -1.38 16 15 C 0.12 1.98 5.67 86.38 0.49 2.47 16 16 N -0.72 -9.43 5.56 -463.05 -2.57 -12.00 16 17 C 0.51 8.99 7.83 87.66 0.69 9.67 16 18 O -0.59 -16.84 15.56 -3.04 -0.05 -16.89 16 19 C -0.10 -0.97 5.98 29.85 0.18 -0.79 16 20 C -0.16 -2.23 5.41 -10.79 -0.06 -2.29 16 21 C -0.19 -2.13 10.18 30.59 0.31 -1.82 16 22 C -0.16 -1.48 10.25 30.59 0.31 -1.17 16 23 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 24 H 0.37 21.07 7.67 -92.70 -0.71 20.36 16 25 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.20 8.14 -2.38 -0.02 1.19 16 33 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.08 0.92 8.14 -2.39 -0.02 0.91 16 35 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.42 2.45 8.47 -92.71 -0.79 1.66 16 38 H 0.12 0.58 8.14 -2.38 -0.02 0.56 16 39 H 0.12 0.59 7.88 -2.39 -0.02 0.57 16 40 H 0.09 1.75 7.31 -2.39 -0.02 1.73 16 41 H 0.11 0.93 8.03 -2.39 -0.02 0.91 16 42 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -74.87 364.58 1.64 -73.22 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: -0.54 Total: 23.95 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 4.41 Total: -14.38 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -4.21 Total: -114.69 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.05 Total: -16.89 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.78 kcal Total: -74.87 1.64 -73.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177743607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.468 kcal (2) G-P(sol) polarization free energy of solvation -74.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds