Wall clock time and date at job start Mon Mar 30 2020 01:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 115.55072 * 2 1 4 4 O 1.21279 * 119.99926 * 214.42207 * 3 2 1 5 5 N 1.34775 * 119.99773 * 34.41808 * 3 2 1 6 6 C 1.46496 * 119.99642 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.46995 * 180.02562 * 6 5 3 8 8 C 1.52997 * 109.47127 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47131 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47131 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.47269 * 179.97438 * 10 9 8 12 12 N 1.46500 * 109.47078 * 179.97438 * 11 10 9 13 13 C 1.36936 * 119.99686 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00423 * 0.02562 * 13 12 11 15 15 C 1.38811 * 120.00103 * 179.97438 * 13 12 11 16 16 N 1.31617 * 120.00490 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 119.99872 * 0.02562 * 15 13 12 18 18 H 1.48505 * 109.47299 * 89.99618 * 17 15 13 19 19 H 1.48497 * 109.47329 * 209.99551 * 17 15 13 20 20 H 1.48498 * 109.47161 * 329.99697 * 17 15 13 21 21 C 1.52998 * 117.49969 * 145.67424 * 2 1 3 22 22 C 1.52999 * 117.49675 * 214.33174 * 2 1 3 23 23 H 1.08998 * 109.47548 * 85.58423 * 1 2 3 24 24 H 1.09002 * 109.46902 * 205.58564 * 1 2 3 25 25 H 1.08996 * 109.46723 * 325.57925 * 1 2 3 26 26 H 0.96998 * 120.00166 * 0.02562 * 5 3 2 27 27 H 1.09001 * 109.47464 * 60.00642 * 6 5 3 28 28 H 1.09001 * 109.47459 * 300.00357 * 6 5 3 29 29 H 1.09001 * 109.47002 * 299.99701 * 7 6 5 30 30 H 1.08993 * 109.46955 * 60.00138 * 7 6 5 31 31 H 1.09001 * 109.47289 * 299.99953 * 8 7 6 32 32 H 1.09004 * 109.47261 * 59.99697 * 8 7 6 33 33 H 1.09001 * 109.46997 * 299.99574 * 9 8 7 34 34 H 1.08992 * 109.47534 * 59.99520 * 9 8 7 35 35 H 1.08998 * 109.47533 * 299.99495 * 10 9 8 36 36 H 1.09001 * 109.47502 * 60.00153 * 10 9 8 37 37 H 1.08992 * 109.47551 * 300.00451 * 11 10 9 38 38 H 1.09004 * 109.46785 * 59.99947 * 11 10 9 39 39 H 0.96998 * 120.00251 * 0.02562 * 12 11 10 40 40 H 0.96996 * 120.00876 * 180.02562 * 16 15 13 41 41 H 1.09002 * 117.50069 * 215.00032 * 21 2 1 42 42 H 1.08997 * 117.50131 * 0.02562 * 21 2 1 43 43 H 1.09006 * 117.50113 * 359.97438 * 22 2 1 44 44 H 1.09003 * 117.49841 * 144.99121 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 8 3.2232 1.5330 -0.5937 5 7 1.6019 2.3829 0.6597 6 6 2.2335 3.7047 0.6593 7 6 1.3802 4.6779 1.4753 8 6 2.0395 6.0586 1.4742 9 6 1.1866 7.0316 2.2907 10 6 1.8462 8.4121 2.2902 11 6 0.9930 9.3853 3.1062 12 7 1.6249 10.7070 3.1063 13 6 1.0376 11.7466 3.7767 14 1 0.1088 11.5922 4.3057 15 6 1.6366 12.9989 3.7772 16 7 1.0725 13.9980 4.4219 17 14 3.2434 13.2660 2.8627 18 1 2.9552 13.6787 1.4656 19 1 4.0282 14.3287 3.5408 20 1 4.0242 12.0029 2.8546 21 6 2.2365 -1.1208 0.7653 22 6 2.2364 -1.1207 -0.7654 23 1 -0.3634 0.0791 -1.0246 24 1 -0.3633 -0.9269 0.4438 25 1 -0.3632 0.8477 0.5809 26 1 0.7677 2.2441 1.1349 27 1 2.3183 4.0665 -0.3654 28 1 3.2267 3.6330 1.1026 29 1 0.3869 4.7497 1.0322 30 1 1.2958 4.3160 2.4999 31 1 3.0330 5.9872 1.9170 32 1 2.1236 6.4203 0.4494 33 1 0.1930 7.1031 1.8483 34 1 1.1029 6.6697 3.3154 35 1 2.8397 8.3403 2.7329 36 1 1.9303 8.7743 1.2656 37 1 -0.0003 9.4571 2.6634 38 1 0.9085 9.0233 4.1309 39 1 2.4589 10.8459 2.6308 40 1 1.4908 14.8732 4.4220 41 1 3.1714 -0.8747 1.2688 42 1 1.6113 -1.8584 1.2684 43 1 1.6111 -1.8583 -1.2686 44 1 3.1712 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178547073.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:31 Heat of formation + Delta-G solvation = -30.075571 kcal Electronic energy + Delta-G solvation = -19287.328636 eV Core-core repulsion = 16239.727965 eV Total energy + Delta-G solvation = -3047.600671 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.51103 -37.48437 -36.68176 -35.53498 -34.07483 -31.98898 -30.50545 -29.14389 -27.27856 -24.64241 -23.10463 -22.92810 -22.00589 -21.14553 -20.84914 -19.67621 -17.50527 -17.37287 -16.41138 -16.30544 -15.45143 -15.08622 -14.69421 -14.50958 -14.22424 -13.90061 -13.62729 -13.24722 -13.08699 -12.97075 -12.81723 -12.65794 -12.40429 -11.97260 -11.80778 -11.63315 -11.46132 -11.05474 -11.01491 -10.86045 -10.78868 -10.53034 -10.37797 -10.36570 -10.11666 -10.01261 -9.56415 -9.41954 -8.86482 -7.19759 -5.74527 -3.09595 2.13575 2.74623 3.33982 3.39529 3.42648 3.46943 4.11308 4.25066 4.33847 4.44296 4.49932 4.61593 4.69194 4.87552 5.09154 5.14261 5.14739 5.17484 5.20371 5.29591 5.32175 5.41659 5.49487 5.53894 5.57935 5.58944 5.65677 5.67912 5.80712 5.86943 6.02391 6.08210 6.12764 6.22073 6.25106 6.38671 6.80054 6.84216 7.12488 7.87022 8.02518 8.44881 9.24521 9.97157 10.17577 11.44014 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.055019 B = 0.002077 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.793115 B =13480.985389 C =13828.937633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.171 4.171 3 C 0.548 3.452 4 O -0.540 6.540 5 N -0.726 5.726 6 C 0.116 3.884 7 C -0.131 4.131 8 C -0.116 4.116 9 C -0.113 4.113 10 C -0.131 4.131 11 C 0.156 3.844 12 N -0.759 5.759 13 C -0.244 4.244 14 H 0.090 0.910 15 C 0.002 3.998 16 N -0.935 5.935 17 Si 0.886 3.114 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.277 1.277 21 C -0.149 4.149 22 C -0.144 4.144 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.401 0.599 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.025 0.975 38 H 0.024 0.976 39 H 0.360 0.640 40 H 0.259 0.741 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.888 -32.544 -8.827 33.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.174 4.174 3 C 0.334 3.666 4 O -0.417 6.417 5 N -0.378 5.378 6 C -0.007 4.007 7 C -0.169 4.169 8 C -0.155 4.155 9 C -0.151 4.151 10 C -0.169 4.169 11 C 0.029 3.971 12 N -0.404 5.404 13 C -0.374 4.374 14 H 0.107 0.893 15 C -0.194 4.194 16 N -0.584 5.584 17 Si 0.716 3.284 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.203 1.203 21 C -0.187 4.187 22 C -0.182 4.182 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.236 0.764 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.043 0.957 38 H 0.042 0.958 39 H 0.193 0.807 40 H 0.069 0.931 41 H 0.117 0.883 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.297 -32.258 -9.108 33.520 hybrid contribution 0.697 0.387 -0.319 0.859 sum 0.400 -31.871 -9.427 33.238 Atomic orbital electron populations 1.21355 0.90334 1.02690 1.02738 1.21521 0.96014 0.89598 1.10277 1.19503 0.84247 0.84829 0.78046 1.90707 1.23320 1.83942 1.43753 1.46003 1.27557 1.10223 1.54031 1.21467 0.96918 0.81203 1.01081 1.21826 0.99453 0.95245 1.00341 1.21519 0.99507 0.93300 1.01127 1.21488 0.99006 0.94573 1.00073 1.21783 0.99733 0.94522 1.00822 1.20638 0.94800 0.84870 0.96803 1.42747 1.26924 1.06946 1.63792 1.19091 1.05805 0.87741 1.24752 0.89267 1.24690 0.98612 0.95766 1.00315 1.69702 1.40411 1.01325 1.46930 0.86515 0.84710 0.77292 0.79840 1.21072 1.21714 1.20346 1.23122 1.02074 0.98257 0.95235 1.23049 1.02681 0.98065 0.94367 0.91466 0.91317 0.91908 0.76381 0.91332 0.91384 0.91205 0.91205 0.91660 0.91639 0.91882 0.91896 0.92143 0.92135 0.95700 0.95761 0.80716 0.93093 0.88297 0.87676 0.87856 0.87409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.51 9.79 37.16 0.36 -0.14 16 2 C -0.17 -1.19 2.61 -155.66 -0.41 -1.59 16 3 C 0.55 5.47 7.39 -10.98 -0.08 5.39 16 4 O -0.54 -7.61 16.26 5.56 0.09 -7.52 16 5 N -0.73 -5.73 5.45 -60.29 -0.33 -6.06 16 6 C 0.12 1.01 5.67 -4.04 -0.02 0.98 16 7 C -0.13 -0.98 5.33 -26.73 -0.14 -1.13 16 8 C -0.12 -1.10 5.21 -26.73 -0.14 -1.24 16 9 C -0.11 -1.29 5.21 -26.73 -0.14 -1.43 16 10 C -0.13 -1.97 5.33 -26.73 -0.14 -2.12 16 11 C 0.16 3.08 6.26 -4.04 -0.03 3.05 16 12 N -0.76 -18.77 5.41 -59.91 -0.32 -19.09 16 13 C -0.24 -7.14 10.47 -15.06 -0.16 -7.30 16 14 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 15 C 0.00 0.05 5.50 -17.43 -0.10 -0.05 16 16 N -0.94 -29.93 13.97 55.49 0.78 -29.16 16 17 Si 0.89 22.60 27.74 -169.99 -4.71 17.89 16 18 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 20 H -0.28 -6.67 6.52 56.52 0.37 -6.30 16 21 C -0.15 -0.87 9.88 -26.70 -0.26 -1.13 16 22 C -0.14 -0.94 9.77 -26.70 -0.26 -1.20 16 23 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.07 0.22 7.90 -51.93 -0.41 -0.19 16 25 H 0.06 0.22 6.39 -51.93 -0.33 -0.11 16 26 H 0.40 2.14 6.78 -40.82 -0.28 1.86 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.36 8.66 5.53 -40.82 -0.23 8.43 16 40 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.10 0.40 8.05 -51.93 -0.42 -0.02 16 43 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.11 0.88 7.67 -51.93 -0.40 0.49 16 LS Contribution 358.80 15.07 5.41 5.41 Total: -1.00 -34.78 358.80 -8.60 -43.38 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -7.99 Total: 3.05 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -1.51 Total: -7.90 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: 0.12 Total: -54.31 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: 0.09 Total: -7.52 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.71 Total: 17.89 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.78 -8.60 -43.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178547073.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.306 kcal (2) G-P(sol) polarization free energy of solvation -34.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds