Wall clock time and date at job start Mon Mar 30 2020 01:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 115.55072 * 2 1 4 4 O 1.21279 * 119.99926 * 214.42207 * 3 2 1 5 5 N 1.34775 * 119.99773 * 34.41808 * 3 2 1 6 6 C 1.46496 * 119.99642 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.46995 * 180.02562 * 6 5 3 8 8 C 1.52997 * 109.47127 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47131 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47131 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.47269 * 179.97438 * 10 9 8 12 12 N 1.46500 * 109.47078 * 179.97438 * 11 10 9 13 13 C 1.36936 * 119.99686 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00423 * 0.02562 * 13 12 11 15 15 C 1.38811 * 120.00103 * 179.97438 * 13 12 11 16 16 N 1.31617 * 120.00490 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 119.99872 * 0.02562 * 15 13 12 18 18 H 1.48505 * 109.47299 * 89.99618 * 17 15 13 19 19 H 1.48497 * 109.47329 * 209.99551 * 17 15 13 20 20 H 1.48498 * 109.47161 * 329.99697 * 17 15 13 21 21 C 1.52998 * 117.49969 * 145.67424 * 2 1 3 22 22 C 1.52999 * 117.49675 * 214.33174 * 2 1 3 23 23 H 1.08998 * 109.47548 * 85.58423 * 1 2 3 24 24 H 1.09002 * 109.46902 * 205.58564 * 1 2 3 25 25 H 1.08996 * 109.46723 * 325.57925 * 1 2 3 26 26 H 0.96998 * 120.00166 * 0.02562 * 5 3 2 27 27 H 1.09001 * 109.47464 * 60.00642 * 6 5 3 28 28 H 1.09001 * 109.47459 * 300.00357 * 6 5 3 29 29 H 1.09001 * 109.47002 * 299.99701 * 7 6 5 30 30 H 1.08993 * 109.46955 * 60.00138 * 7 6 5 31 31 H 1.09001 * 109.47289 * 299.99953 * 8 7 6 32 32 H 1.09004 * 109.47261 * 59.99697 * 8 7 6 33 33 H 1.09001 * 109.46997 * 299.99574 * 9 8 7 34 34 H 1.08992 * 109.47534 * 59.99520 * 9 8 7 35 35 H 1.08998 * 109.47533 * 299.99495 * 10 9 8 36 36 H 1.09001 * 109.47502 * 60.00153 * 10 9 8 37 37 H 1.08992 * 109.47551 * 300.00451 * 11 10 9 38 38 H 1.09004 * 109.46785 * 59.99947 * 11 10 9 39 39 H 0.96998 * 120.00251 * 0.02562 * 12 11 10 40 40 H 0.96996 * 120.00876 * 180.02562 * 16 15 13 41 41 H 1.09002 * 117.50069 * 215.00032 * 21 2 1 42 42 H 1.08997 * 117.50131 * 0.02562 * 21 2 1 43 43 H 1.09006 * 117.50113 * 359.97438 * 22 2 1 44 44 H 1.09003 * 117.49841 * 144.99121 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 8 3.2232 1.5330 -0.5937 5 7 1.6019 2.3829 0.6597 6 6 2.2335 3.7047 0.6593 7 6 1.3802 4.6779 1.4753 8 6 2.0395 6.0586 1.4742 9 6 1.1866 7.0316 2.2907 10 6 1.8462 8.4121 2.2902 11 6 0.9930 9.3853 3.1062 12 7 1.6249 10.7070 3.1063 13 6 1.0376 11.7466 3.7767 14 1 0.1088 11.5922 4.3057 15 6 1.6366 12.9989 3.7772 16 7 1.0725 13.9980 4.4219 17 14 3.2434 13.2660 2.8627 18 1 2.9552 13.6787 1.4656 19 1 4.0282 14.3287 3.5408 20 1 4.0242 12.0029 2.8546 21 6 2.2365 -1.1208 0.7653 22 6 2.2364 -1.1207 -0.7654 23 1 -0.3634 0.0791 -1.0246 24 1 -0.3633 -0.9269 0.4438 25 1 -0.3632 0.8477 0.5809 26 1 0.7677 2.2441 1.1349 27 1 2.3183 4.0665 -0.3654 28 1 3.2267 3.6330 1.1026 29 1 0.3869 4.7497 1.0322 30 1 1.2958 4.3160 2.4999 31 1 3.0330 5.9872 1.9170 32 1 2.1236 6.4203 0.4494 33 1 0.1930 7.1031 1.8483 34 1 1.1029 6.6697 3.3154 35 1 2.8397 8.3403 2.7329 36 1 1.9303 8.7743 1.2656 37 1 -0.0003 9.4571 2.6634 38 1 0.9085 9.0233 4.1309 39 1 2.4589 10.8459 2.6308 40 1 1.4908 14.8732 4.4220 41 1 3.1714 -0.8747 1.2688 42 1 1.6113 -1.8584 1.2684 43 1 1.6111 -1.8583 -1.2686 44 1 3.1712 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178547073.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:30 Heat of formation + Delta-G solvation = -53.201213 kcal Electronic energy + Delta-G solvation = -19288.331439 eV Core-core repulsion = 16239.727965 eV Total energy + Delta-G solvation = -3048.603474 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.20938 -38.19636 -37.66073 -36.78891 -35.37491 -33.69792 -31.95091 -29.68878 -28.41474 -25.90082 -24.27113 -23.42558 -23.14996 -22.27941 -21.98077 -20.35600 -19.60732 -17.98751 -17.16533 -17.08433 -16.62011 -16.32701 -15.84231 -15.69395 -15.40500 -14.94299 -14.88998 -14.19864 -14.17366 -13.91248 -13.54628 -13.49419 -13.34613 -13.20051 -13.04195 -12.69024 -12.48654 -12.41127 -12.09315 -11.89613 -11.86898 -11.82924 -11.56247 -11.52719 -11.35348 -10.99407 -10.98212 -10.81717 -10.15604 -9.31796 -8.05181 -5.39055 1.36553 1.40330 1.42262 1.47932 2.10319 2.46781 2.82330 3.25848 3.54589 3.63886 3.72756 3.87703 3.89257 3.98086 4.01509 4.20234 4.22737 4.29041 4.57089 4.58436 4.68448 4.75234 4.76419 4.82448 4.84893 4.91489 4.94920 4.95228 4.98899 5.03154 5.13085 5.19461 5.26151 5.27489 5.32333 5.41495 5.51817 5.54250 5.73148 6.19382 6.48914 7.05797 7.17846 7.82772 8.02015 9.16299 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.055019 B = 0.002077 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.793115 B =13480.985389 C =13828.937633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.177 4.177 3 C 0.538 3.462 4 O -0.591 6.591 5 N -0.714 5.714 6 C 0.118 3.882 7 C -0.118 4.118 8 C -0.113 4.113 9 C -0.106 4.106 10 C -0.121 4.121 11 C 0.149 3.851 12 N -0.763 5.763 13 C -0.241 4.241 14 H 0.055 0.945 15 C -0.067 4.067 16 N -0.983 5.983 17 Si 0.960 3.040 18 H -0.276 1.276 19 H -0.293 1.293 20 H -0.252 1.252 21 C -0.139 4.139 22 C -0.152 4.152 23 H 0.065 0.935 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.416 0.584 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.023 0.977 38 H 0.022 0.978 39 H 0.366 0.634 40 H 0.259 0.741 41 H 0.085 0.915 42 H 0.133 0.867 43 H 0.125 0.875 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.915 -34.656 -9.419 35.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.180 4.180 3 C 0.326 3.674 4 O -0.472 6.472 5 N -0.366 5.366 6 C -0.005 4.005 7 C -0.156 4.156 8 C -0.151 4.151 9 C -0.144 4.144 10 C -0.159 4.159 11 C 0.024 3.976 12 N -0.409 5.409 13 C -0.372 4.372 14 H 0.073 0.927 15 C -0.258 4.258 16 N -0.634 5.634 17 Si 0.786 3.214 18 H -0.202 1.202 19 H -0.220 1.220 20 H -0.177 1.177 21 C -0.176 4.176 22 C -0.189 4.189 23 H 0.084 0.916 24 H 0.106 0.894 25 H 0.091 0.909 26 H 0.254 0.746 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.041 0.959 38 H 0.040 0.960 39 H 0.199 0.801 40 H 0.068 0.932 41 H 0.104 0.896 42 H 0.151 0.849 43 H 0.144 0.856 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.361 -34.422 -9.691 35.762 hybrid contribution 0.624 1.021 -0.085 1.200 sum 0.263 -33.400 -9.776 34.803 Atomic orbital electron populations 1.21394 0.88071 1.04180 1.03123 1.21602 0.97490 0.87894 1.11064 1.20134 0.83727 0.86243 0.77269 1.90679 1.25624 1.84902 1.45991 1.45928 1.27800 1.09588 1.53292 1.21377 0.96802 0.81847 1.00494 1.21702 0.99392 0.93654 1.00839 1.21451 0.99231 0.93784 1.00642 1.21420 0.99264 0.92732 1.00968 1.21701 0.99100 0.95232 0.99831 1.20874 0.95445 0.83733 0.97584 1.42804 1.27178 1.07682 1.63223 1.19090 1.04721 0.89256 1.24134 0.92686 1.25585 1.02959 0.95426 1.01851 1.69887 1.42555 1.01904 1.49039 0.85341 0.79790 0.77983 0.78265 1.20233 1.21984 1.17667 1.23211 1.01761 0.97939 0.94678 1.23091 1.02118 0.98617 0.95105 0.91572 0.89412 0.90931 0.74640 0.92570 0.92653 0.89982 0.90056 0.91791 0.91716 0.91247 0.91319 0.92032 0.91892 0.95893 0.96020 0.80099 0.93244 0.89622 0.84922 0.85638 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 9.79 71.98 0.70 0.02 16 2 C -0.18 -2.21 2.61 -52.93 -0.14 -2.35 16 3 C 0.54 10.56 7.39 87.66 0.65 11.20 16 4 O -0.59 -17.22 16.26 -3.03 -0.05 -17.27 16 5 N -0.71 -10.30 5.45 -463.06 -2.53 -12.83 16 6 C 0.12 1.92 5.67 86.38 0.49 2.41 16 7 C -0.12 -1.47 5.33 30.60 0.16 -1.31 16 8 C -0.11 -1.85 5.21 30.59 0.16 -1.70 16 9 C -0.11 -2.14 5.21 30.59 0.16 -1.98 16 10 C -0.12 -3.38 5.33 30.60 0.16 -3.22 16 11 C 0.15 5.73 6.26 86.38 0.54 6.27 16 12 N -0.76 -37.00 5.41 -343.45 -1.86 -38.86 16 13 C -0.24 -14.26 10.47 84.03 0.88 -13.38 16 14 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 15 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 16 N -0.98 -64.17 13.97 21.65 0.30 -63.87 16 17 Si 0.96 46.32 27.74 68.60 1.90 48.23 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 20 H -0.25 -11.00 6.52 99.48 0.65 -10.35 16 21 C -0.14 -1.38 9.88 30.62 0.30 -1.08 16 22 C -0.15 -1.87 9.77 30.62 0.30 -1.57 16 23 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 24 H 0.09 0.24 7.90 -2.39 -0.02 0.22 16 25 H 0.07 0.29 6.39 -2.39 -0.02 0.28 16 26 H 0.42 3.42 6.78 -92.71 -0.63 2.79 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.37 16.78 5.53 -92.71 -0.51 16.27 16 40 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 41 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.13 0.59 8.05 -2.39 -0.02 0.57 16 43 H 0.13 0.93 8.14 -2.38 -0.02 0.91 16 44 H 0.08 1.44 7.67 -2.39 -0.02 1.42 16 Total: -1.00 -76.95 358.80 2.38 -74.57 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -0.24 Total: 20.26 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 4.84 Total: -10.24 kcal Atomic # 7 Polarization: -111.47 SS G_CDS: -4.08 Total: -115.55 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.05 Total: -17.27 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.90 Total: 48.23 kcal Total: -76.95 2.38 -74.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178547073.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.369 kcal (2) G-P(sol) polarization free energy of solvation -76.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds