Wall clock time and date at job start Mon Mar 30 2020 00:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50695 * 119.99948 * 2 1 4 4 C 1.53001 * 109.99095 * 241.08538 * 3 2 1 5 5 C 1.54106 * 109.87764 * 120.00299 * 3 2 1 6 6 C 1.54810 * 104.18526 * 242.60650 * 5 3 2 7 7 C 1.54991 * 102.09350 * 20.88072 * 6 5 3 8 8 H 1.08993 * 110.62131 * 81.47823 * 7 6 5 9 9 C 1.53003 * 110.61474 * 204.47831 * 7 6 5 10 10 C 1.53000 * 109.47052 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.46880 * 299.99510 * 9 7 6 12 12 O 1.42898 * 109.47425 * 59.99862 * 9 7 6 13 13 C 1.42901 * 114.00148 * 180.02562 * 12 9 7 14 14 C 1.52992 * 109.47313 * 179.97438 * 13 12 9 15 15 C 1.50697 * 109.47227 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00202 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00011 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00324 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00115 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46861 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47008 * 120.00146 * 19 17 15 22 22 H 1.48497 * 109.47454 * 240.00319 * 19 17 15 23 23 O 1.43745 * 109.88297 * 2.17230 * 3 2 1 24 24 H 1.07999 * 119.99594 * 179.97438 * 1 2 3 25 25 H 1.07996 * 119.99740 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.99751 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.47138 * 298.91697 * 4 3 2 28 28 H 1.08993 * 109.47138 * 58.91895 * 4 3 2 29 29 H 1.09002 * 109.47143 * 178.92013 * 4 3 2 30 30 H 1.09000 * 110.48246 * 1.28259 * 5 3 2 31 31 H 1.08996 * 110.48742 * 123.79512 * 5 3 2 32 32 H 1.09005 * 110.90592 * 139.08047 * 6 5 3 33 33 H 1.09001 * 110.90204 * 262.64524 * 6 5 3 34 34 H 1.09007 * 109.47132 * 59.99602 * 10 9 7 35 35 H 1.09002 * 109.47033 * 179.97438 * 10 9 7 36 36 H 1.08999 * 109.47138 * 299.99944 * 10 9 7 37 37 H 1.09001 * 109.46779 * 60.00828 * 11 9 7 38 38 H 1.09002 * 109.47081 * 180.02562 * 11 9 7 39 39 H 1.08997 * 109.47287 * 300.00425 * 11 9 7 40 40 H 1.09008 * 109.47011 * 300.00076 * 13 12 9 41 41 H 1.08995 * 109.47171 * 59.99608 * 13 12 9 42 42 H 1.09000 * 109.47434 * 300.00313 * 14 13 12 43 43 H 1.09003 * 109.47059 * 60.00091 * 14 13 12 44 44 H 0.96993 * 120.00334 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9271 1.4105 -1.2586 5 6 2.9531 1.3965 1.2550 6 6 2.3957 2.6171 2.0270 7 6 0.9656 2.7450 1.4435 8 1 0.2884 2.0428 1.9297 9 6 0.4513 4.1788 1.5870 10 6 -0.9595 4.2755 1.0031 11 6 0.4185 4.5630 3.0677 12 8 1.3197 5.0690 0.8831 13 6 0.9273 6.4413 0.9545 14 6 1.9234 7.2980 0.1706 15 6 1.5093 8.7450 0.2454 16 1 0.6244 9.0256 0.7973 17 6 2.2608 9.7109 -0.3898 18 7 3.3387 9.3693 -1.0614 19 14 1.7470 11.5045 -0.2977 20 1 0.5079 11.6235 0.5119 21 1 2.8304 12.2977 0.3367 22 1 1.4948 12.0183 -1.6679 23 8 1.1381 2.4038 0.0512 24 1 -0.5399 -0.9353 -0.0004 25 1 -0.5399 0.9353 0.0004 26 1 1.8501 -0.9354 -0.0004 27 1 3.6518 0.5963 -1.2712 28 1 2.2917 1.3451 -2.1417 29 1 3.4532 2.3651 -1.2594 30 1 2.8607 0.4911 1.8548 31 1 3.9931 1.5626 0.9742 32 1 2.3624 2.4178 3.0982 33 1 2.9832 3.5111 1.8177 34 1 -1.6222 3.5963 1.5397 35 1 -1.3261 5.2969 1.1057 36 1 -0.9357 4.0019 -0.0517 37 1 1.4238 4.4943 3.4832 38 1 0.0517 5.5843 3.1700 39 1 -0.2439 3.8840 3.6046 40 1 -0.0683 6.5573 0.5260 41 1 0.9141 6.7616 1.9962 42 1 2.9188 7.1819 0.5993 43 1 1.9370 6.9778 -0.8712 44 1 3.8671 10.0487 -1.5086 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205632635.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:34 Heat of formation + Delta-G solvation = -88.330344 kcal Electronic energy + Delta-G solvation = -21751.393899 eV Core-core repulsion = 18668.974360 eV Total energy + Delta-G solvation = -3082.419538 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.22591 -37.98911 -34.15706 -33.14938 -32.33872 -31.86086 -30.00420 -29.55957 -27.14683 -25.85949 -24.49359 -22.78157 -21.40183 -20.72349 -19.43560 -19.38516 -16.86401 -16.39148 -15.79099 -15.54061 -14.76216 -14.64252 -14.52954 -14.34607 -13.50906 -13.28504 -13.00453 -12.93389 -12.69961 -12.22407 -12.18768 -12.06821 -11.90161 -11.84838 -11.57818 -11.41447 -11.23129 -10.95818 -10.92713 -10.80434 -10.58847 -10.49303 -10.18485 -9.99239 -9.61496 -9.41736 -9.28271 -9.09848 -8.71666 -8.30103 -5.99293 -4.02423 2.21525 3.31986 3.38974 3.42900 3.81959 4.25007 4.51152 4.66961 4.68176 4.79546 5.02494 5.09284 5.21614 5.23837 5.33455 5.36781 5.46297 5.51493 5.61261 5.68001 5.73890 5.78719 5.82672 5.90872 5.97173 6.00936 6.09299 6.15625 6.25040 6.26397 6.34720 6.37076 6.49491 6.53967 6.59912 6.70565 7.00176 7.20077 7.63818 7.86741 7.90656 8.20763 8.42225 9.04699 9.61024 11.12405 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.027049 B = 0.004310 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.905523 B = 6495.272126 C = 6906.837572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.174 4.174 3 C 0.127 3.873 4 C -0.138 4.138 5 C -0.140 4.140 6 C -0.147 4.147 7 C 0.095 3.905 8 H 0.073 0.927 9 C 0.118 3.882 10 C -0.175 4.175 11 C -0.178 4.178 12 O -0.366 6.366 13 C 0.064 3.936 14 C 0.027 3.973 15 C -0.521 4.521 16 H 0.056 0.944 17 C 0.059 3.941 18 N -0.891 5.891 19 Si 0.894 3.106 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 O -0.341 6.341 24 H 0.093 0.907 25 H 0.108 0.892 26 H 0.111 0.889 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.036 0.964 41 H 0.035 0.965 42 H 0.022 0.978 43 H 0.023 0.977 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.165 -18.792 6.101 20.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.192 4.192 3 C 0.087 3.913 4 C -0.195 4.195 5 C -0.178 4.178 6 C -0.184 4.184 7 C 0.037 3.963 8 H 0.091 0.909 9 C 0.078 3.922 10 C -0.232 4.232 11 C -0.235 4.235 12 O -0.285 6.285 13 C -0.011 4.011 14 C -0.010 4.010 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.143 4.143 18 N -0.530 5.530 19 Si 0.722 3.278 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.209 1.209 23 O -0.260 6.260 24 H 0.111 0.889 25 H 0.126 0.874 26 H 0.129 0.871 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.040 0.960 43 H 0.042 0.958 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.959 -18.671 5.707 19.921 hybrid contribution -0.425 0.911 0.318 1.054 sum -4.384 -17.761 6.025 19.260 Atomic orbital electron populations 1.23882 0.96252 1.02086 0.99565 1.23382 0.96633 0.97901 1.01280 1.21014 0.88770 0.85387 0.96170 1.21826 0.98797 1.02682 0.96209 1.22952 1.00227 0.98710 0.95909 1.23134 0.96643 0.99231 0.99428 1.23072 0.96229 0.93947 0.83047 0.90946 1.21266 0.90475 0.89106 0.91384 1.22359 0.96216 1.02254 1.02387 1.22407 1.02656 1.02532 0.95900 1.88065 1.49913 1.17451 1.73097 1.22893 0.99431 0.79607 0.99189 1.19035 0.93980 0.92342 0.95633 1.21105 1.10641 0.91552 1.32656 0.92612 1.24988 0.94951 0.99097 0.95235 1.69993 1.15938 1.33473 1.33590 0.86504 0.78534 0.84962 0.77803 1.19731 1.20963 1.20937 1.89003 1.63377 1.49644 1.23981 0.88851 0.87433 0.87067 0.91710 0.92025 0.91032 0.91074 0.90229 0.90811 0.88853 0.92591 0.91850 0.91221 0.91574 0.91261 0.92212 0.94573 0.94704 0.95976 0.95818 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 13.67 29.01 0.40 -1.55 16 2 C -0.17 -1.88 8.53 -36.03 -0.31 -2.19 16 3 C 0.13 1.61 1.16 -91.20 -0.11 1.50 16 4 C -0.14 -1.69 8.66 37.16 0.32 -1.37 16 5 C -0.14 -1.60 6.27 -25.20 -0.16 -1.75 16 6 C -0.15 -1.90 5.40 -24.73 -0.13 -2.04 16 7 C 0.09 1.33 2.23 -25.68 -0.06 1.27 16 8 H 0.07 0.89 7.82 -51.93 -0.41 0.49 16 9 C 0.12 1.86 0.63 -90.62 -0.06 1.81 16 10 C -0.17 -2.60 8.17 37.16 0.30 -2.30 16 11 C -0.18 -2.42 8.03 37.16 0.30 -2.12 16 12 O -0.37 -7.52 9.03 -46.98 -0.42 -7.94 16 13 C 0.06 1.44 5.08 37.15 0.19 1.62 16 14 C 0.03 0.75 5.34 -27.89 -0.15 0.60 16 15 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -27.28 13.29 55.43 0.74 -26.55 16 19 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 O -0.34 -5.37 8.59 -46.98 -0.40 -5.77 16 24 H 0.09 0.82 8.06 -52.49 -0.42 0.39 16 25 H 0.11 1.31 6.65 -52.49 -0.35 0.96 16 26 H 0.11 0.99 8.06 -52.48 -0.42 0.57 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.07 0.68 7.69 -51.93 -0.40 0.28 16 31 H 0.08 0.86 7.70 -51.93 -0.40 0.46 16 32 H 0.07 0.80 8.04 -51.93 -0.42 0.38 16 33 H 0.09 1.45 7.42 -51.93 -0.39 1.06 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.97 6.54 -51.93 -0.34 0.63 16 36 H 0.07 1.13 7.90 -51.93 -0.41 0.72 16 37 H 0.07 0.89 7.20 -51.93 -0.37 0.51 16 38 H 0.07 1.00 6.54 -51.93 -0.34 0.66 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.04 0.79 6.42 -51.92 -0.33 0.46 16 41 H 0.03 0.74 6.42 -51.93 -0.33 0.41 16 42 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 LS Contribution 345.00 15.07 5.20 5.20 Total: -1.00 -31.50 345.00 -7.62 -39.12 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -7.83 Total: -0.58 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: 0.13 Total: -20.29 kcal Atomic # 7 Polarization: -27.28 SS G_CDS: 0.74 Total: -26.55 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.83 Total: -13.71 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.50 -7.62 -39.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205632635.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.212 kcal (2) G-P(sol) polarization free energy of solvation -31.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds