Wall clock time and date at job start Mon Mar 30 2020 00:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50695 * 119.99948 * 2 1 4 4 C 1.53001 * 109.99095 * 241.08538 * 3 2 1 5 5 C 1.54106 * 109.87764 * 120.00299 * 3 2 1 6 6 C 1.54810 * 104.18526 * 242.60650 * 5 3 2 7 7 C 1.54991 * 102.09350 * 20.88072 * 6 5 3 8 8 H 1.08993 * 110.62131 * 81.47823 * 7 6 5 9 9 C 1.53003 * 110.61474 * 204.47831 * 7 6 5 10 10 C 1.53000 * 109.47052 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.46880 * 299.99510 * 9 7 6 12 12 O 1.42898 * 109.47425 * 59.99862 * 9 7 6 13 13 C 1.42901 * 114.00148 * 180.02562 * 12 9 7 14 14 C 1.52992 * 109.47313 * 179.97438 * 13 12 9 15 15 C 1.50697 * 109.47227 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00202 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00011 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00324 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00115 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46861 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47008 * 120.00146 * 19 17 15 22 22 H 1.48497 * 109.47454 * 240.00319 * 19 17 15 23 23 O 1.43745 * 109.88297 * 2.17230 * 3 2 1 24 24 H 1.07999 * 119.99594 * 179.97438 * 1 2 3 25 25 H 1.07996 * 119.99740 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.99751 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.47138 * 298.91697 * 4 3 2 28 28 H 1.08993 * 109.47138 * 58.91895 * 4 3 2 29 29 H 1.09002 * 109.47143 * 178.92013 * 4 3 2 30 30 H 1.09000 * 110.48246 * 1.28259 * 5 3 2 31 31 H 1.08996 * 110.48742 * 123.79512 * 5 3 2 32 32 H 1.09005 * 110.90592 * 139.08047 * 6 5 3 33 33 H 1.09001 * 110.90204 * 262.64524 * 6 5 3 34 34 H 1.09007 * 109.47132 * 59.99602 * 10 9 7 35 35 H 1.09002 * 109.47033 * 179.97438 * 10 9 7 36 36 H 1.08999 * 109.47138 * 299.99944 * 10 9 7 37 37 H 1.09001 * 109.46779 * 60.00828 * 11 9 7 38 38 H 1.09002 * 109.47081 * 180.02562 * 11 9 7 39 39 H 1.08997 * 109.47287 * 300.00425 * 11 9 7 40 40 H 1.09008 * 109.47011 * 300.00076 * 13 12 9 41 41 H 1.08995 * 109.47171 * 59.99608 * 13 12 9 42 42 H 1.09000 * 109.47434 * 300.00313 * 14 13 12 43 43 H 1.09003 * 109.47059 * 60.00091 * 14 13 12 44 44 H 0.96993 * 120.00334 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9271 1.4105 -1.2586 5 6 2.9531 1.3965 1.2550 6 6 2.3957 2.6171 2.0270 7 6 0.9656 2.7450 1.4435 8 1 0.2884 2.0428 1.9297 9 6 0.4513 4.1788 1.5870 10 6 -0.9595 4.2755 1.0031 11 6 0.4185 4.5630 3.0677 12 8 1.3197 5.0690 0.8831 13 6 0.9273 6.4413 0.9545 14 6 1.9234 7.2980 0.1706 15 6 1.5093 8.7450 0.2454 16 1 0.6244 9.0256 0.7973 17 6 2.2608 9.7109 -0.3898 18 7 3.3387 9.3693 -1.0614 19 14 1.7470 11.5045 -0.2977 20 1 0.5079 11.6235 0.5119 21 1 2.8304 12.2977 0.3367 22 1 1.4948 12.0183 -1.6679 23 8 1.1381 2.4038 0.0512 24 1 -0.5399 -0.9353 -0.0004 25 1 -0.5399 0.9353 0.0004 26 1 1.8501 -0.9354 -0.0004 27 1 3.6518 0.5963 -1.2712 28 1 2.2917 1.3451 -2.1417 29 1 3.4532 2.3651 -1.2594 30 1 2.8607 0.4911 1.8548 31 1 3.9931 1.5626 0.9742 32 1 2.3624 2.4178 3.0982 33 1 2.9832 3.5111 1.8177 34 1 -1.6222 3.5963 1.5397 35 1 -1.3261 5.2969 1.1057 36 1 -0.9357 4.0019 -0.0517 37 1 1.4238 4.4943 3.4832 38 1 0.0517 5.5843 3.1700 39 1 -0.2439 3.8840 3.6046 40 1 -0.0683 6.5573 0.5260 41 1 0.9141 6.7616 1.9962 42 1 2.9188 7.1819 0.5993 43 1 1.9370 6.9778 -0.8712 44 1 3.8671 10.0487 -1.5086 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205632635.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:34 Heat of formation + Delta-G solvation = -106.440460 kcal Electronic energy + Delta-G solvation = -21752.179212 eV Core-core repulsion = 18668.974360 eV Total energy + Delta-G solvation = -3083.204852 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.30973 -39.37404 -35.74283 -34.79818 -33.63650 -32.89002 -31.61227 -30.98185 -28.28144 -27.20159 -26.29043 -23.88381 -22.76374 -22.23747 -20.78804 -20.28777 -18.61322 -17.79343 -17.15757 -16.72643 -16.41791 -16.35983 -15.93420 -15.36220 -14.65173 -14.63697 -14.44348 -14.15717 -13.96800 -13.74026 -13.40540 -13.23486 -13.14189 -13.03257 -12.91305 -12.83093 -12.63365 -12.54158 -12.38544 -12.19017 -11.93010 -11.80034 -11.53263 -11.47529 -11.38946 -11.06809 -10.65444 -10.60350 -10.24539 -10.17793 -8.23704 -6.37074 1.39858 1.40429 1.41350 1.54819 2.37296 2.80243 2.91969 3.09908 3.60933 3.75783 3.83250 3.97978 4.03990 4.17239 4.19866 4.37233 4.44527 4.46159 4.48689 4.52384 4.64446 4.68187 4.71108 4.82453 4.85987 4.87940 4.92273 4.93193 5.05619 5.09776 5.18594 5.22411 5.25743 5.29461 5.37460 5.39383 5.60110 5.71035 5.74593 5.86532 6.13066 6.23191 6.57547 6.79388 7.32854 8.89724 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.027049 B = 0.004310 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.905523 B = 6495.272126 C = 6906.837572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.173 4.173 3 C 0.115 3.885 4 C -0.138 4.138 5 C -0.135 4.135 6 C -0.147 4.147 7 C 0.096 3.904 8 H 0.099 0.901 9 C 0.104 3.896 10 C -0.170 4.170 11 C -0.173 4.173 12 O -0.390 6.390 13 C 0.085 3.915 14 C 0.032 3.968 15 C -0.544 4.544 16 H 0.067 0.933 17 C 0.000 4.000 18 N -0.933 5.933 19 Si 0.975 3.025 20 H -0.258 1.258 21 H -0.275 1.275 22 H -0.277 1.277 23 O -0.374 6.374 24 H 0.116 0.884 25 H 0.089 0.911 26 H 0.137 0.863 27 H 0.093 0.907 28 H 0.052 0.948 29 H 0.044 0.956 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.054 0.946 36 H 0.048 0.952 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.094 0.906 40 H 0.039 0.961 41 H 0.047 0.953 42 H -0.009 1.009 43 H -0.014 1.014 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.446 -19.891 7.781 22.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.191 4.191 3 C 0.075 3.925 4 C -0.195 4.195 5 C -0.172 4.172 6 C -0.185 4.185 7 C 0.038 3.962 8 H 0.116 0.884 9 C 0.065 3.935 10 C -0.228 4.228 11 C -0.230 4.230 12 O -0.310 6.310 13 C 0.009 3.991 14 C -0.005 4.005 15 C -0.581 4.581 16 H 0.085 0.915 17 C -0.198 4.198 18 N -0.573 5.573 19 Si 0.798 3.202 20 H -0.182 1.182 21 H -0.201 1.201 22 H -0.203 1.203 23 O -0.294 6.294 24 H 0.134 0.866 25 H 0.107 0.893 26 H 0.155 0.845 27 H 0.111 0.889 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.117 0.883 31 H 0.098 0.902 32 H 0.118 0.882 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.010 0.990 43 H 0.004 0.996 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.249 -19.791 7.398 21.770 hybrid contribution -0.002 1.166 -0.246 1.192 sum -5.251 -18.625 7.152 20.630 Atomic orbital electron populations 1.23961 0.96342 1.02301 0.99333 1.23430 0.96675 0.97603 1.01432 1.21260 0.88898 0.85715 0.96591 1.21854 0.99146 1.02341 0.96196 1.22961 0.99832 0.99046 0.95409 1.23104 0.95674 0.98516 1.01195 1.23176 0.97195 0.92994 0.82802 0.88367 1.21716 0.90191 0.89234 0.92408 1.22318 0.96364 1.02532 1.01541 1.22370 1.03498 1.02773 0.94362 1.88021 1.51691 1.16850 1.74486 1.22410 0.97516 0.80428 0.98739 1.18884 0.94012 0.93652 0.93964 1.21499 1.11218 0.92306 1.33124 0.91515 1.26057 0.94683 1.04669 0.94394 1.70143 1.17251 1.35499 1.34361 0.85260 0.78725 0.78005 0.78195 1.18162 1.20082 1.20280 1.88975 1.64261 1.51068 1.25111 0.86557 0.89315 0.84504 0.88850 0.92898 0.93714 0.88320 0.90243 0.88217 0.92421 0.89276 0.92677 0.93304 0.91627 0.92268 0.88741 0.94255 0.93460 0.99040 0.99573 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.52 13.67 67.77 0.93 -2.59 16 2 C -0.17 -3.33 8.53 25.64 0.22 -3.11 16 3 C 0.11 2.81 1.16 -11.17 -0.01 2.80 16 4 C -0.14 -3.43 8.66 71.98 0.62 -2.81 16 5 C -0.14 -2.86 6.27 31.59 0.20 -2.66 16 6 C -0.15 -3.68 5.40 31.89 0.17 -3.51 16 7 C 0.10 2.58 2.23 31.28 0.07 2.65 16 8 H 0.10 2.14 7.82 -2.39 -0.02 2.12 16 9 C 0.10 3.23 0.63 -10.79 -0.01 3.22 16 10 C -0.17 -4.96 8.17 71.98 0.59 -4.37 16 11 C -0.17 -4.40 8.03 71.98 0.58 -3.82 16 12 O -0.39 -16.68 9.03 -137.75 -1.24 -17.93 16 13 C 0.09 3.92 5.08 71.98 0.37 4.29 16 14 C 0.03 1.86 5.34 29.84 0.16 2.02 16 15 C -0.54 -32.16 9.11 25.60 0.23 -31.92 16 16 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 17 C 0.00 0.00 5.46 84.65 0.46 0.46 16 18 N -0.93 -58.82 13.29 21.45 0.28 -58.54 16 19 Si 0.97 44.93 29.54 68.60 2.03 46.95 16 20 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 23 O -0.37 -11.86 8.59 -137.75 -1.18 -13.04 16 24 H 0.12 1.67 8.06 -2.91 -0.02 1.65 16 25 H 0.09 2.06 6.65 -2.91 -0.02 2.04 16 26 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 27 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.10 1.55 7.69 -2.39 -0.02 1.53 16 31 H 0.08 1.66 7.70 -2.39 -0.02 1.64 16 32 H 0.10 1.92 8.04 -2.38 -0.02 1.90 16 33 H 0.06 1.85 7.42 -2.39 -0.02 1.83 16 34 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.05 1.67 6.54 -2.39 -0.02 1.65 16 36 H 0.05 1.60 7.90 -2.39 -0.02 1.59 16 37 H 0.06 1.67 7.20 -2.39 -0.02 1.65 16 38 H 0.06 1.62 6.54 -2.39 -0.02 1.61 16 39 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.04 1.77 6.42 -2.38 -0.02 1.75 16 41 H 0.05 2.04 6.42 -2.39 -0.02 2.03 16 42 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 43 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 44 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -71.25 345.00 5.39 -65.86 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.94 Total: 16.05 kcal Atomic # 6 Polarization: -43.93 SS G_CDS: 4.57 Total: -39.36 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: 0.28 Total: -58.54 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -2.43 Total: -30.96 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -71.25 5.39 -65.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205632635.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.585 kcal (2) G-P(sol) polarization free energy of solvation -71.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds