Wall clock time and date at job start Mon Mar 30 2020 00:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 119.99973 * 2 1 4 4 C 1.53003 * 109.82189 * 119.11504 * 3 2 1 5 5 C 1.54382 * 109.82741 * 239.99681 * 3 2 1 6 6 C 1.55305 * 102.43395 * 98.05511 * 5 3 2 7 7 C 1.55503 * 100.69731 * 34.13038 * 6 5 3 8 8 H 1.09000 * 110.29205 * 82.50380 * 7 6 5 9 9 C 1.52995 * 110.36774 * 204.61167 * 7 6 5 10 10 C 1.52998 * 109.47248 * 177.25270 * 9 7 6 11 11 C 1.53007 * 109.47025 * 297.24878 * 9 7 6 12 12 O 1.42892 * 109.47618 * 57.24804 * 9 7 6 13 13 C 1.42897 * 114.00453 * 179.97438 * 12 9 7 14 14 C 1.52998 * 109.47184 * 180.02562 * 13 12 9 15 15 C 1.50709 * 109.46830 * 180.02562 * 14 13 12 16 16 H 1.07993 * 119.99822 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99715 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00173 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99913 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47450 * 90.00083 * 19 17 15 21 21 H 1.48506 * 109.47212 * 209.99970 * 19 17 15 22 22 H 1.48504 * 109.46973 * 329.99868 * 19 17 15 23 23 O 1.43232 * 109.83029 * 358.13139 * 3 2 1 24 24 H 1.07999 * 120.00264 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.00362 * 180.02562 * 1 2 3 26 26 H 1.08002 * 119.99637 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.46511 * 180.88546 * 4 3 2 28 28 H 1.09001 * 109.46817 * 300.88468 * 4 3 2 29 29 H 1.08994 * 109.47319 * 60.88214 * 4 3 2 30 30 H 1.09002 * 110.84829 * 216.34816 * 5 3 2 31 31 H 1.09001 * 110.84937 * 339.76916 * 5 3 2 32 32 H 1.08999 * 111.12419 * 152.14904 * 6 5 3 33 33 H 1.08995 * 111.13053 * 276.31315 * 6 5 3 34 34 H 1.09003 * 109.47116 * 59.99118 * 10 9 7 35 35 H 1.09001 * 109.47614 * 179.97438 * 10 9 7 36 36 H 1.09002 * 109.47033 * 300.00012 * 10 9 7 37 37 H 1.09001 * 109.46705 * 59.99627 * 11 9 7 38 38 H 1.08995 * 109.47158 * 180.02562 * 11 9 7 39 39 H 1.09003 * 109.46774 * 300.00535 * 11 9 7 40 40 H 1.08998 * 109.47463 * 300.00397 * 13 12 9 41 41 H 1.09001 * 109.47062 * 60.00067 * 13 12 9 42 42 H 1.09001 * 109.47478 * 299.99793 * 14 13 12 43 43 H 1.08993 * 109.47511 * 60.00770 * 14 13 12 44 44 H 0.97007 * 120.00327 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9294 1.4043 1.2575 5 6 2.9542 1.3955 -1.2577 6 6 2.0897 2.2565 -2.2186 7 6 1.3912 3.2068 -1.2052 8 1 2.0483 4.0389 -0.9524 9 6 0.0744 3.7278 -1.7843 10 6 -0.6280 4.6047 -0.7458 11 6 0.3610 4.5544 -3.0396 12 8 -0.7671 2.6237 -2.1230 13 6 -2.0295 3.0028 -2.6749 14 6 -2.8427 1.7477 -2.9975 15 6 -4.1738 2.1476 -3.5802 16 1 -4.4156 3.1924 -3.7073 17 6 -5.0832 1.1795 -3.9500 18 7 -4.7889 -0.0928 -3.7947 19 14 -6.7328 1.6751 -4.6729 20 1 -6.6157 1.7766 -6.1497 21 1 -7.7524 0.6525 -4.3264 22 1 -7.1418 2.9900 -4.1171 23 8 1.1402 2.3992 -0.0439 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5401 -0.9353 0.0004 26 1 1.8499 -0.9354 0.0004 27 1 3.4595 2.3567 1.2593 28 1 2.2950 1.3398 2.1415 29 1 3.6505 0.5870 1.2675 30 1 3.8962 1.8948 -1.0308 31 1 3.1331 0.4060 -1.6783 32 1 2.7146 2.8125 -2.9175 33 1 1.3614 1.6426 -2.7484 34 1 0.0139 5.4469 -0.4874 35 1 -1.5659 4.9763 -1.1585 36 1 -0.8322 4.0159 0.1485 37 1 0.8615 3.9297 -3.7794 38 1 -0.5770 4.9260 -3.4519 39 1 1.0030 5.3966 -2.7812 40 1 -2.5734 3.6122 -1.9532 41 1 -1.8693 3.5769 -3.5876 42 1 -2.2991 1.1379 -3.7191 43 1 -3.0030 1.1740 -2.0847 44 1 -5.4286 -0.7740 -4.0552 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205632643.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:37 Heat of formation + Delta-G solvation = -88.781571 kcal Electronic energy + Delta-G solvation = -22003.779233 eV Core-core repulsion = 18921.340128 eV Total energy + Delta-G solvation = -3082.439105 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.12728 -37.91843 -34.15868 -33.12696 -32.31403 -31.59366 -29.88841 -29.56117 -27.11548 -25.91282 -24.50892 -22.40181 -21.49533 -20.75914 -19.43639 -19.12724 -16.79212 -16.26260 -15.94448 -14.96198 -14.79181 -14.71631 -14.56203 -14.16481 -13.50258 -13.35899 -12.98580 -12.88157 -12.60029 -12.23099 -12.21108 -12.02250 -11.88816 -11.72024 -11.57069 -11.22486 -11.15508 -10.96077 -10.88365 -10.82602 -10.61166 -10.44569 -10.15908 -9.94807 -9.45634 -9.30632 -9.10266 -8.94371 -8.70995 -8.30238 -5.99747 -4.02819 2.70882 3.32321 3.38332 3.41491 3.81114 4.25931 4.50987 4.69122 4.81486 4.85770 5.04305 5.18945 5.28846 5.35457 5.36358 5.37337 5.52825 5.60811 5.62887 5.74364 5.76176 5.82044 5.88226 5.94943 5.98713 6.00724 6.15988 6.18162 6.27297 6.36351 6.41690 6.50457 6.52220 6.62863 6.99921 7.04177 7.10543 7.45436 7.63282 7.86283 7.90278 8.20534 8.41860 9.04020 9.60603 11.11803 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.024120 B = 0.004891 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.564000 B = 5723.895514 C = 6356.292078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.195 4.195 3 C 0.138 3.862 4 C -0.147 4.147 5 C -0.142 4.142 6 C -0.146 4.146 7 C 0.100 3.900 8 H 0.073 0.927 9 C 0.113 3.887 10 C -0.173 4.173 11 C -0.177 4.177 12 O -0.365 6.365 13 C 0.064 3.936 14 C 0.029 3.971 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.059 3.941 18 N -0.891 5.891 19 Si 0.894 3.106 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 O -0.352 6.352 24 H 0.118 0.882 25 H 0.091 0.909 26 H 0.107 0.893 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.036 0.964 41 H 0.034 0.966 42 H 0.021 0.979 43 H 0.023 0.977 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.615 5.594 6.476 18.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.213 4.213 3 C 0.099 3.901 4 C -0.204 4.204 5 C -0.179 4.179 6 C -0.184 4.184 7 C 0.042 3.958 8 H 0.090 0.910 9 C 0.072 3.928 10 C -0.230 4.230 11 C -0.235 4.235 12 O -0.285 6.285 13 C -0.011 4.011 14 C -0.008 4.008 15 C -0.560 4.560 16 H 0.073 0.927 17 C -0.142 4.142 18 N -0.530 5.530 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 O -0.271 6.271 24 H 0.136 0.864 25 H 0.110 0.890 26 H 0.125 0.875 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.039 0.961 43 H 0.042 0.958 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 16.434 5.261 6.637 18.488 hybrid contribution -0.905 0.387 -0.668 1.189 sum 15.530 5.648 5.970 17.570 Atomic orbital electron populations 1.24010 0.96072 1.02854 0.94768 1.22866 0.96485 0.96269 1.05702 1.20856 0.88251 0.86438 0.94589 1.22030 0.99118 1.01584 0.97673 1.23125 0.98138 1.01384 0.95292 1.23335 0.99059 0.98120 0.97877 1.22991 0.94115 0.93407 0.85270 0.90957 1.21388 0.90465 0.87848 0.93074 1.22324 1.00857 0.99579 1.00247 1.22397 1.02665 1.00063 0.98330 1.88043 1.28398 1.29537 1.82528 1.22886 0.82596 1.00589 0.95063 1.19016 0.92968 0.91472 0.97348 1.21068 1.00279 0.92847 1.41818 0.92711 1.24975 0.98506 0.94904 0.95827 1.69982 1.35772 0.99515 1.47707 0.86570 0.83615 0.78286 0.79384 1.20638 1.21151 1.19858 1.88449 1.56151 1.38865 1.43679 0.86426 0.89017 0.87524 0.92482 0.91983 0.91794 0.91001 0.90176 0.90607 0.88691 0.92657 0.92038 0.91202 0.91689 0.91366 0.92271 0.94612 0.94767 0.96053 0.95830 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 14.08 29.02 0.41 -1.91 16 2 C -0.20 -2.78 8.63 -36.02 -0.31 -3.09 16 3 C 0.14 1.82 1.23 -91.04 -0.11 1.70 16 4 C -0.15 -1.58 8.73 37.16 0.32 -1.25 16 5 C -0.14 -1.62 6.06 -24.78 -0.15 -1.77 16 6 C -0.15 -1.89 5.53 -24.18 -0.13 -2.03 16 7 C 0.10 1.38 2.75 -25.40 -0.07 1.31 16 8 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 9 C 0.11 1.75 0.62 -90.62 -0.06 1.69 16 10 C -0.17 -2.57 8.12 37.16 0.30 -2.26 16 11 C -0.18 -2.40 8.06 37.16 0.30 -2.10 16 12 O -0.37 -7.25 8.97 -44.36 -0.40 -7.65 16 13 C 0.06 1.41 5.08 37.16 0.19 1.60 16 14 C 0.03 0.79 5.34 -27.88 -0.15 0.64 16 15 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 16 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -27.10 13.29 55.43 0.74 -26.36 16 19 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 O -0.35 -5.42 8.12 -44.36 -0.36 -5.78 16 24 H 0.12 2.25 6.86 -52.49 -0.36 1.89 16 25 H 0.09 1.45 8.06 -52.49 -0.42 1.03 16 26 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.68 7.85 -51.93 -0.41 0.27 16 31 H 0.08 0.88 7.82 -51.93 -0.41 0.47 16 32 H 0.08 0.82 8.06 -51.93 -0.42 0.40 16 33 H 0.09 1.50 7.32 -51.93 -0.38 1.12 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.94 6.54 -51.93 -0.34 0.60 16 36 H 0.07 1.13 7.76 -51.93 -0.40 0.72 16 37 H 0.06 0.87 7.29 -51.93 -0.38 0.49 16 38 H 0.07 0.98 6.54 -51.93 -0.34 0.64 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.04 0.77 6.42 -51.93 -0.33 0.44 16 41 H 0.03 0.72 6.42 -51.93 -0.33 0.39 16 42 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 346.23 15.07 5.22 5.22 Total: -1.00 -30.78 346.23 -7.56 -38.34 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -7.87 Total: 0.62 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: 0.13 Total: -21.13 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.74 Total: -26.36 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.76 Total: -13.44 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.78 -7.56 -38.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205632643.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.439 kcal (2) G-P(sol) polarization free energy of solvation -30.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds