Wall clock time and date at job start Mon Mar 30 2020 00:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 119.99973 * 2 1 4 4 C 1.53003 * 109.82189 * 119.11504 * 3 2 1 5 5 C 1.54382 * 109.82741 * 239.99681 * 3 2 1 6 6 C 1.55305 * 102.43395 * 98.05511 * 5 3 2 7 7 C 1.55503 * 100.69731 * 34.13038 * 6 5 3 8 8 H 1.09000 * 110.29205 * 82.50380 * 7 6 5 9 9 C 1.52995 * 110.36774 * 204.61167 * 7 6 5 10 10 C 1.52998 * 109.47248 * 177.25270 * 9 7 6 11 11 C 1.53007 * 109.47025 * 297.24878 * 9 7 6 12 12 O 1.42892 * 109.47618 * 57.24804 * 9 7 6 13 13 C 1.42897 * 114.00453 * 179.97438 * 12 9 7 14 14 C 1.52998 * 109.47184 * 180.02562 * 13 12 9 15 15 C 1.50709 * 109.46830 * 180.02562 * 14 13 12 16 16 H 1.07993 * 119.99822 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99715 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00173 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99913 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47450 * 90.00083 * 19 17 15 21 21 H 1.48506 * 109.47212 * 209.99970 * 19 17 15 22 22 H 1.48504 * 109.46973 * 329.99868 * 19 17 15 23 23 O 1.43232 * 109.83029 * 358.13139 * 3 2 1 24 24 H 1.07999 * 120.00264 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.00362 * 180.02562 * 1 2 3 26 26 H 1.08002 * 119.99637 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.46511 * 180.88546 * 4 3 2 28 28 H 1.09001 * 109.46817 * 300.88468 * 4 3 2 29 29 H 1.08994 * 109.47319 * 60.88214 * 4 3 2 30 30 H 1.09002 * 110.84829 * 216.34816 * 5 3 2 31 31 H 1.09001 * 110.84937 * 339.76916 * 5 3 2 32 32 H 1.08999 * 111.12419 * 152.14904 * 6 5 3 33 33 H 1.08995 * 111.13053 * 276.31315 * 6 5 3 34 34 H 1.09003 * 109.47116 * 59.99118 * 10 9 7 35 35 H 1.09001 * 109.47614 * 179.97438 * 10 9 7 36 36 H 1.09002 * 109.47033 * 300.00012 * 10 9 7 37 37 H 1.09001 * 109.46705 * 59.99627 * 11 9 7 38 38 H 1.08995 * 109.47158 * 180.02562 * 11 9 7 39 39 H 1.09003 * 109.46774 * 300.00535 * 11 9 7 40 40 H 1.08998 * 109.47463 * 300.00397 * 13 12 9 41 41 H 1.09001 * 109.47062 * 60.00067 * 13 12 9 42 42 H 1.09001 * 109.47478 * 299.99793 * 14 13 12 43 43 H 1.08993 * 109.47511 * 60.00770 * 14 13 12 44 44 H 0.97007 * 120.00327 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9294 1.4043 1.2575 5 6 2.9542 1.3955 -1.2577 6 6 2.0897 2.2565 -2.2186 7 6 1.3912 3.2068 -1.2052 8 1 2.0483 4.0389 -0.9524 9 6 0.0744 3.7278 -1.7843 10 6 -0.6280 4.6047 -0.7458 11 6 0.3610 4.5544 -3.0396 12 8 -0.7671 2.6237 -2.1230 13 6 -2.0295 3.0028 -2.6749 14 6 -2.8427 1.7477 -2.9975 15 6 -4.1738 2.1476 -3.5802 16 1 -4.4156 3.1924 -3.7073 17 6 -5.0832 1.1795 -3.9500 18 7 -4.7889 -0.0928 -3.7947 19 14 -6.7328 1.6751 -4.6729 20 1 -6.6157 1.7766 -6.1497 21 1 -7.7524 0.6525 -4.3264 22 1 -7.1418 2.9900 -4.1171 23 8 1.1402 2.3992 -0.0439 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5401 -0.9353 0.0004 26 1 1.8499 -0.9354 0.0004 27 1 3.4595 2.3567 1.2593 28 1 2.2950 1.3398 2.1415 29 1 3.6505 0.5870 1.2675 30 1 3.8962 1.8948 -1.0308 31 1 3.1331 0.4060 -1.6783 32 1 2.7146 2.8125 -2.9175 33 1 1.3614 1.6426 -2.7484 34 1 0.0139 5.4469 -0.4874 35 1 -1.5659 4.9763 -1.1585 36 1 -0.8322 4.0159 0.1485 37 1 0.8615 3.9297 -3.7794 38 1 -0.5770 4.9260 -3.4519 39 1 1.0030 5.3966 -2.7812 40 1 -2.5734 3.6122 -1.9532 41 1 -1.8693 3.5769 -3.5876 42 1 -2.2991 1.1379 -3.7191 43 1 -3.0030 1.1740 -2.0847 44 1 -5.4286 -0.7740 -4.0552 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205632643.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:36 Heat of formation + Delta-G solvation = -106.328108 kcal Electronic energy + Delta-G solvation = -22004.540108 eV Core-core repulsion = 18921.340128 eV Total energy + Delta-G solvation = -3083.199980 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.23452 -39.29305 -35.76179 -34.88087 -33.62231 -32.76119 -31.56825 -30.91337 -28.24429 -27.18780 -26.31226 -23.64129 -22.64480 -22.50015 -20.77997 -20.24130 -18.60101 -17.68245 -17.29992 -16.53522 -16.35395 -16.24124 -15.84290 -15.54386 -14.73192 -14.51707 -14.27889 -14.19820 -14.09302 -13.58501 -13.43158 -13.30497 -13.09853 -12.96988 -12.83310 -12.75538 -12.65583 -12.43986 -12.34874 -12.26456 -11.88667 -11.80063 -11.60469 -11.44503 -11.38780 -11.00955 -10.63644 -10.45071 -10.19965 -10.12758 -8.23358 -6.36501 1.39163 1.41777 1.46678 1.52850 2.37198 2.78382 2.95760 3.10178 3.62744 3.76811 3.91688 3.98402 4.05067 4.16436 4.32599 4.37261 4.45285 4.47951 4.49826 4.55287 4.69255 4.74244 4.78036 4.87108 4.89062 4.91153 4.93995 4.96258 5.05806 5.09310 5.24770 5.27076 5.32732 5.37556 5.40309 5.43598 5.62062 5.75488 5.79925 5.86420 6.14288 6.37808 6.60395 6.79813 7.33229 8.89608 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.024120 B = 0.004891 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.564000 B = 5723.895514 C = 6356.292078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.172 4.172 3 C 0.124 3.876 4 C -0.140 4.140 5 C -0.133 4.133 6 C -0.146 4.146 7 C 0.097 3.903 8 H 0.105 0.895 9 C 0.098 3.902 10 C -0.168 4.168 11 C -0.172 4.172 12 O -0.385 6.385 13 C 0.085 3.915 14 C 0.036 3.964 15 C -0.544 4.544 16 H 0.065 0.935 17 C 0.001 3.999 18 N -0.932 5.932 19 Si 0.972 3.028 20 H -0.269 1.269 21 H -0.281 1.281 22 H -0.261 1.261 23 O -0.378 6.378 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.132 0.868 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.055 0.945 34 H 0.087 0.913 35 H 0.051 0.949 36 H 0.047 0.953 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.093 0.907 40 H 0.037 0.963 41 H 0.045 0.955 42 H -0.011 1.011 43 H -0.013 1.013 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.457 7.416 6.192 20.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.190 4.190 3 C 0.085 3.915 4 C -0.197 4.197 5 C -0.171 4.171 6 C -0.184 4.184 7 C 0.040 3.960 8 H 0.122 0.878 9 C 0.059 3.941 10 C -0.225 4.225 11 C -0.229 4.229 12 O -0.305 6.305 13 C 0.009 3.991 14 C -0.001 4.001 15 C -0.582 4.582 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.571 5.571 19 Si 0.796 3.204 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.185 1.185 23 O -0.298 6.298 24 H 0.103 0.897 25 H 0.106 0.894 26 H 0.149 0.851 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.104 0.896 30 H 0.122 0.878 31 H 0.103 0.897 32 H 0.121 0.879 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.112 0.888 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.008 0.992 43 H 0.005 0.995 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 18.294 7.097 6.360 20.627 hybrid contribution -1.377 -0.212 -0.531 1.491 sum 16.917 6.885 5.829 19.172 Atomic orbital electron populations 1.23775 0.97255 1.01227 0.99327 1.23315 0.95731 0.98403 1.01510 1.21189 0.88362 0.85000 0.96972 1.21991 0.98839 1.03364 0.95542 1.23138 0.98599 1.01790 0.93528 1.23297 0.98776 0.98059 0.98266 1.23173 0.93319 0.94394 0.85108 0.87756 1.21832 0.90687 0.87168 0.94401 1.22281 1.01082 1.00125 0.99052 1.22356 1.02773 1.00760 0.97046 1.88019 1.27761 1.32140 1.82564 1.22385 0.83444 0.97595 0.95662 1.18838 0.93627 0.92991 0.94651 1.21472 1.01071 0.93523 1.42158 0.91687 1.26025 1.03011 0.94694 0.95959 1.70135 1.37484 1.00920 1.48589 0.85344 0.77893 0.78370 0.78807 1.19420 1.20642 1.18481 1.88447 1.57441 1.39642 1.44254 0.89667 0.89434 0.85069 0.90954 0.93187 0.89585 0.87772 0.89736 0.87870 0.92577 0.89442 0.93033 0.93351 0.91712 0.92584 0.88792 0.94493 0.93721 0.99212 0.99471 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.39 14.08 67.78 0.95 -5.44 16 2 C -0.17 -4.89 8.63 25.65 0.22 -4.67 16 3 C 0.12 3.07 1.23 -11.07 -0.01 3.05 16 4 C -0.14 -2.63 8.73 71.98 0.63 -2.00 16 5 C -0.13 -2.65 6.06 31.86 0.19 -2.46 16 6 C -0.15 -3.52 5.53 32.25 0.18 -3.35 16 7 C 0.10 2.52 2.75 31.45 0.09 2.61 16 8 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 9 C 0.10 3.00 0.62 -10.79 -0.01 2.99 16 10 C -0.17 -4.89 8.12 71.98 0.58 -4.31 16 11 C -0.17 -4.32 8.06 71.98 0.58 -3.74 16 12 O -0.38 -15.97 8.97 -140.25 -1.26 -17.23 16 13 C 0.09 3.90 5.08 71.98 0.37 4.26 16 14 C 0.04 2.08 5.34 29.85 0.16 2.24 16 15 C -0.54 -32.15 9.11 25.60 0.23 -31.91 16 16 H 0.06 3.62 7.74 -2.91 -0.02 3.59 16 17 C 0.00 0.07 5.46 84.66 0.46 0.54 16 18 N -0.93 -58.62 13.29 21.45 0.28 -58.33 16 19 Si 0.97 44.96 29.54 68.60 2.03 46.98 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 22 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 23 O -0.38 -11.47 8.12 -140.25 -1.14 -12.61 16 24 H 0.08 3.60 6.86 -2.91 -0.02 3.58 16 25 H 0.09 3.06 8.06 -2.91 -0.02 3.04 16 26 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.10 1.46 7.85 -2.39 -0.02 1.44 16 31 H 0.08 1.62 7.82 -2.39 -0.02 1.60 16 32 H 0.10 1.88 8.06 -2.39 -0.02 1.86 16 33 H 0.06 1.80 7.32 -2.39 -0.02 1.78 16 34 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.05 1.57 6.54 -2.39 -0.02 1.56 16 36 H 0.05 1.60 7.76 -2.39 -0.02 1.58 16 37 H 0.06 1.62 7.29 -2.39 -0.02 1.60 16 38 H 0.06 1.54 6.54 -2.39 -0.02 1.52 16 39 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.04 1.66 6.42 -2.39 -0.02 1.64 16 41 H 0.04 1.93 6.42 -2.39 -0.02 1.91 16 42 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 43 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 44 H 0.26 15.54 8.31 -92.70 -0.77 14.77 16 Total: -1.00 -70.75 346.23 5.48 -65.28 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.93 Total: 18.10 kcal Atomic # 6 Polarization: -46.82 SS G_CDS: 4.63 Total: -42.19 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: 0.28 Total: -58.33 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -2.40 Total: -29.84 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -70.75 5.48 -65.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205632643.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.049 kcal (2) G-P(sol) polarization free energy of solvation -70.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds