Wall clock time and date at job start Mon Mar 30 2020 00:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99832 * 2 1 4 4 C 1.53005 * 109.86970 * 241.00847 * 3 2 1 5 5 C 1.54100 * 109.87834 * 120.00431 * 3 2 1 6 6 C 1.54817 * 104.18606 * 238.39522 * 5 3 2 7 7 C 1.54998 * 102.12466 * 339.09929 * 6 5 3 8 8 H 1.08997 * 110.62197 * 278.54323 * 7 6 5 9 9 C 1.52998 * 110.61705 * 155.53959 * 7 6 5 10 10 C 1.53002 * 109.47083 * 185.00061 * 9 7 6 11 11 C 1.53000 * 109.47474 * 305.00188 * 9 7 6 12 12 O 1.42898 * 109.46909 * 65.00557 * 9 7 6 13 13 C 1.42898 * 114.00062 * 179.97438 * 12 9 7 14 14 C 1.53001 * 109.47416 * 179.97438 * 13 12 9 15 15 C 1.50697 * 109.47162 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00285 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99911 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00102 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00148 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47084 * 59.99905 * 19 17 15 21 21 H 1.48496 * 109.47351 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46830 * 300.00195 * 19 17 15 23 23 O 1.43746 * 110.00566 * 2.09340 * 3 2 1 24 24 H 1.07998 * 120.00165 * 180.02562 * 1 2 3 25 25 H 1.08002 * 119.99993 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.99993 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.46966 * 298.99246 * 4 3 2 28 28 H 1.08999 * 109.47103 * 58.99479 * 4 3 2 29 29 H 1.08999 * 109.46741 * 178.99523 * 4 3 2 30 30 H 1.08991 * 110.48958 * 119.72236 * 5 3 2 31 31 H 1.08995 * 110.60333 * 357.11982 * 5 3 2 32 32 H 1.09002 * 110.90844 * 97.31763 * 6 5 3 33 33 H 1.08997 * 110.90682 * 220.88854 * 6 5 3 34 34 H 1.09003 * 109.46792 * 60.00279 * 10 9 7 35 35 H 1.08997 * 109.47097 * 180.02562 * 10 9 7 36 36 H 1.09005 * 109.47246 * 300.00338 * 10 9 7 37 37 H 1.09002 * 109.46686 * 59.99784 * 11 9 7 38 38 H 1.08997 * 109.47281 * 179.97438 * 11 9 7 39 39 H 1.09003 * 109.47235 * 300.00232 * 11 9 7 40 40 H 1.09002 * 109.47349 * 299.99932 * 13 12 9 41 41 H 1.09002 * 109.46865 * 59.99930 * 13 12 9 42 42 H 1.09002 * 109.47003 * 300.00385 * 14 13 12 43 43 H 1.09002 * 109.46965 * 60.00232 * 14 13 12 44 44 H 0.96997 * 120.00334 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9275 1.4068 -1.2586 5 6 2.9531 1.3966 1.2550 6 6 2.4674 2.6801 1.9716 7 6 1.7712 3.4515 0.8215 8 1 2.5052 3.9849 0.2176 9 6 0.7239 4.4183 1.3778 10 6 -0.0320 5.0728 0.2198 11 6 -0.2616 3.6500 2.2607 12 8 1.3723 5.4275 2.1543 13 6 0.4790 6.3874 2.7223 14 6 1.2780 7.4134 3.5283 15 6 0.3358 8.4253 4.1278 16 1 -0.7267 8.3444 3.9520 17 6 0.8302 9.4544 4.9009 18 7 2.1240 9.5526 5.1155 19 14 -0.3377 10.7082 5.6447 20 1 -1.3006 10.0177 6.5398 21 1 0.4378 11.7041 6.4269 22 1 -1.0789 11.3991 4.5591 23 8 1.1404 2.4059 0.0493 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 3.6504 0.5911 -1.2699 28 1 2.2920 1.3414 -2.1418 29 1 3.4555 2.3603 -1.2607 30 1 4.0017 1.4906 0.9732 31 1 2.8070 0.5251 1.8930 32 1 1.7581 2.4388 2.7634 33 1 3.3100 3.2477 2.3664 34 1 -0.5266 4.3029 -0.3726 35 1 -0.7778 5.7619 0.6161 36 1 0.6701 5.6202 -0.4092 37 1 0.2771 3.1836 3.0856 38 1 -1.0073 4.3388 2.6573 39 1 -0.7561 2.8801 1.6683 40 1 -0.0644 6.8945 1.9250 41 1 -0.2284 5.8811 3.3791 42 1 1.8211 6.9060 4.3257 43 1 1.9857 7.9198 2.8719 44 1 2.4719 10.2768 5.6590 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205632645.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:42 Heat of formation + Delta-G solvation = -86.409069 kcal Electronic energy + Delta-G solvation = -21516.463723 eV Core-core repulsion = 18434.127498 eV Total energy + Delta-G solvation = -3082.336226 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.34665 -38.08178 -34.43953 -33.25989 -32.22892 -31.88831 -29.87151 -29.59131 -27.14984 -26.32504 -24.59619 -22.70845 -21.52678 -20.76740 -19.64011 -19.23600 -16.86019 -16.22977 -16.05660 -15.21147 -15.05553 -14.75131 -14.64453 -14.26910 -13.98718 -13.57331 -13.20320 -13.17780 -12.73413 -12.30234 -12.23348 -11.97144 -11.83017 -11.71795 -11.55238 -11.44436 -11.37411 -11.02778 -10.95106 -10.86479 -10.59220 -10.51095 -10.22377 -10.00954 -9.71387 -9.44595 -9.38236 -9.16189 -8.79233 -8.33380 -6.02252 -4.05746 2.16463 3.32762 3.36722 3.38297 3.45994 4.39182 4.46290 4.57521 4.69578 4.76707 4.89104 5.06352 5.15986 5.19686 5.23899 5.33757 5.34263 5.42104 5.54509 5.60838 5.73266 5.78630 5.87505 5.89869 5.96639 5.99702 6.05707 6.13484 6.16220 6.23893 6.27368 6.32647 6.49258 6.51827 6.55791 6.61022 6.93471 7.05418 7.57655 7.80921 7.85530 8.13648 8.37634 9.00697 9.57839 11.09371 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.040165 B = 0.003648 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.953163 B = 7672.824925 C = 7889.681615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.160 4.160 3 C 0.130 3.870 4 C -0.157 4.157 5 C -0.143 4.143 6 C -0.147 4.147 7 C 0.097 3.903 8 H 0.075 0.925 9 C 0.120 3.880 10 C -0.173 4.173 11 C -0.175 4.175 12 O -0.379 6.379 13 C 0.068 3.932 14 C 0.027 3.973 15 C -0.524 4.524 16 H 0.055 0.945 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.896 3.104 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 O -0.356 6.356 24 H 0.094 0.906 25 H 0.109 0.891 26 H 0.115 0.885 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.023 0.977 43 H 0.023 0.977 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.375 -18.721 -10.727 21.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C 0.090 3.910 4 C -0.215 4.215 5 C -0.180 4.180 6 C -0.185 4.185 7 C 0.039 3.961 8 H 0.093 0.907 9 C 0.080 3.920 10 C -0.230 4.230 11 C -0.232 4.232 12 O -0.299 6.299 13 C -0.007 4.007 14 C -0.010 4.010 15 C -0.562 4.562 16 H 0.074 0.926 17 C -0.142 4.142 18 N -0.530 5.530 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 O -0.275 6.275 24 H 0.112 0.888 25 H 0.128 0.872 26 H 0.133 0.867 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.041 0.959 43 H 0.041 0.959 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.247 -18.591 -10.704 21.454 hybrid contribution -0.658 0.697 0.478 1.072 sum -0.905 -17.894 -10.226 20.630 Atomic orbital electron populations 1.23870 0.96213 1.02150 0.98496 1.22837 0.96327 0.96344 1.02281 1.20947 0.88799 0.86231 0.94992 1.22194 0.99491 1.02291 0.97517 1.22990 0.99619 0.99244 0.96192 1.23194 1.01601 0.95121 0.98559 1.22803 0.93322 0.88659 0.91271 0.90706 1.21054 0.91311 0.88405 0.91221 1.22339 1.00981 1.01135 0.98549 1.22422 0.99749 1.00734 1.00277 1.87919 1.35028 1.39366 1.67565 1.22910 0.93275 0.89139 0.95422 1.19053 0.95689 0.91722 0.94557 1.21020 0.93358 1.10426 1.31396 0.92635 1.24986 0.95130 0.97822 0.96289 1.69969 1.11812 1.32291 1.38950 0.86599 0.80775 0.81010 0.79277 1.20174 1.21197 1.20162 1.88821 1.40406 1.24817 1.73492 0.88808 0.87245 0.86688 0.91685 0.91934 0.91958 0.90562 0.90536 0.89825 0.89584 0.91563 0.91920 0.92147 0.91787 0.92000 0.91565 0.94379 0.94384 0.95857 0.95855 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 14.09 29.01 0.41 -1.27 16 2 C -0.16 -1.54 8.57 -36.03 -0.31 -1.85 16 3 C 0.13 1.39 1.15 -91.19 -0.10 1.29 16 4 C -0.16 -1.48 8.59 37.16 0.32 -1.16 16 5 C -0.14 -1.48 6.26 -25.20 -0.16 -1.63 16 6 C -0.15 -1.90 6.28 -24.72 -0.16 -2.05 16 7 C 0.10 1.36 2.75 -25.68 -0.07 1.29 16 8 H 0.08 1.08 8.12 -51.93 -0.42 0.66 16 9 C 0.12 1.92 0.69 -90.62 -0.06 1.86 16 10 C -0.17 -2.61 8.13 37.16 0.30 -2.30 16 11 C -0.17 -2.59 7.75 37.16 0.29 -2.30 16 12 O -0.38 -7.60 9.80 -35.23 -0.35 -7.94 16 13 C 0.07 1.49 5.08 37.16 0.19 1.68 16 14 C 0.03 0.73 5.34 -27.88 -0.15 0.58 16 15 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -27.01 13.29 55.43 0.74 -26.28 16 19 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 O -0.36 -4.63 7.81 -35.23 -0.28 -4.90 16 24 H 0.09 0.75 8.06 -52.49 -0.42 0.33 16 25 H 0.11 1.23 6.87 -52.49 -0.36 0.87 16 26 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.60 8.11 -51.93 -0.42 0.18 16 30 H 0.08 0.70 7.69 -51.93 -0.40 0.30 16 31 H 0.08 0.72 7.70 -51.93 -0.40 0.32 16 32 H 0.08 1.11 5.66 -51.93 -0.29 0.82 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.07 0.91 7.76 -51.93 -0.40 0.50 16 35 H 0.06 0.97 6.54 -51.93 -0.34 0.63 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.94 6.02 -51.93 -0.31 0.63 16 38 H 0.06 0.95 6.54 -51.93 -0.34 0.61 16 39 H 0.07 0.89 7.71 -51.93 -0.40 0.49 16 40 H 0.04 0.81 6.42 -51.93 -0.33 0.48 16 41 H 0.04 0.81 6.42 -51.93 -0.33 0.48 16 42 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 343.57 15.07 5.18 5.18 Total: -1.00 -30.28 343.57 -7.32 -37.61 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -7.68 Total: -0.75 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 0.09 Total: -19.55 kcal Atomic # 7 Polarization: -27.01 SS G_CDS: 0.74 Total: -26.28 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -0.62 Total: -12.85 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.28 -7.32 -37.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205632645.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.803 kcal (2) G-P(sol) polarization free energy of solvation -30.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds