Wall clock time and date at job start Mon Mar 30 2020 00:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99832 * 2 1 4 4 C 1.53005 * 109.86970 * 241.00847 * 3 2 1 5 5 C 1.54100 * 109.87834 * 120.00431 * 3 2 1 6 6 C 1.54817 * 104.18606 * 238.39522 * 5 3 2 7 7 C 1.54998 * 102.12466 * 339.09929 * 6 5 3 8 8 H 1.08997 * 110.62197 * 278.54323 * 7 6 5 9 9 C 1.52998 * 110.61705 * 155.53959 * 7 6 5 10 10 C 1.53002 * 109.47083 * 185.00061 * 9 7 6 11 11 C 1.53000 * 109.47474 * 305.00188 * 9 7 6 12 12 O 1.42898 * 109.46909 * 65.00557 * 9 7 6 13 13 C 1.42898 * 114.00062 * 179.97438 * 12 9 7 14 14 C 1.53001 * 109.47416 * 179.97438 * 13 12 9 15 15 C 1.50697 * 109.47162 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00285 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99911 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00102 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00148 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47084 * 59.99905 * 19 17 15 21 21 H 1.48496 * 109.47351 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46830 * 300.00195 * 19 17 15 23 23 O 1.43746 * 110.00566 * 2.09340 * 3 2 1 24 24 H 1.07998 * 120.00165 * 180.02562 * 1 2 3 25 25 H 1.08002 * 119.99993 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.99993 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.46966 * 298.99246 * 4 3 2 28 28 H 1.08999 * 109.47103 * 58.99479 * 4 3 2 29 29 H 1.08999 * 109.46741 * 178.99523 * 4 3 2 30 30 H 1.08991 * 110.48958 * 119.72236 * 5 3 2 31 31 H 1.08995 * 110.60333 * 357.11982 * 5 3 2 32 32 H 1.09002 * 110.90844 * 97.31763 * 6 5 3 33 33 H 1.08997 * 110.90682 * 220.88854 * 6 5 3 34 34 H 1.09003 * 109.46792 * 60.00279 * 10 9 7 35 35 H 1.08997 * 109.47097 * 180.02562 * 10 9 7 36 36 H 1.09005 * 109.47246 * 300.00338 * 10 9 7 37 37 H 1.09002 * 109.46686 * 59.99784 * 11 9 7 38 38 H 1.08997 * 109.47281 * 179.97438 * 11 9 7 39 39 H 1.09003 * 109.47235 * 300.00232 * 11 9 7 40 40 H 1.09002 * 109.47349 * 299.99932 * 13 12 9 41 41 H 1.09002 * 109.46865 * 59.99930 * 13 12 9 42 42 H 1.09002 * 109.47003 * 300.00385 * 14 13 12 43 43 H 1.09002 * 109.46965 * 60.00232 * 14 13 12 44 44 H 0.96997 * 120.00334 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9275 1.4068 -1.2586 5 6 2.9531 1.3966 1.2550 6 6 2.4674 2.6801 1.9716 7 6 1.7712 3.4515 0.8215 8 1 2.5052 3.9849 0.2176 9 6 0.7239 4.4183 1.3778 10 6 -0.0320 5.0728 0.2198 11 6 -0.2616 3.6500 2.2607 12 8 1.3723 5.4275 2.1543 13 6 0.4790 6.3874 2.7223 14 6 1.2780 7.4134 3.5283 15 6 0.3358 8.4253 4.1278 16 1 -0.7267 8.3444 3.9520 17 6 0.8302 9.4544 4.9009 18 7 2.1240 9.5526 5.1155 19 14 -0.3377 10.7082 5.6447 20 1 -1.3006 10.0177 6.5398 21 1 0.4378 11.7041 6.4269 22 1 -1.0789 11.3991 4.5591 23 8 1.1404 2.4059 0.0493 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 3.6504 0.5911 -1.2699 28 1 2.2920 1.3414 -2.1418 29 1 3.4555 2.3603 -1.2607 30 1 4.0017 1.4906 0.9732 31 1 2.8070 0.5251 1.8930 32 1 1.7581 2.4388 2.7634 33 1 3.3100 3.2477 2.3664 34 1 -0.5266 4.3029 -0.3726 35 1 -0.7778 5.7619 0.6161 36 1 0.6701 5.6202 -0.4092 37 1 0.2771 3.1836 3.0856 38 1 -1.0073 4.3388 2.6573 39 1 -0.7561 2.8801 1.6683 40 1 -0.0644 6.8945 1.9250 41 1 -0.2284 5.8811 3.3791 42 1 1.8211 6.9060 4.3257 43 1 1.9857 7.9198 2.8719 44 1 2.4719 10.2768 5.6590 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205632645.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:41 Heat of formation + Delta-G solvation = -103.223543 kcal Electronic energy + Delta-G solvation = -21517.192854 eV Core-core repulsion = 18434.127498 eV Total energy + Delta-G solvation = -3083.065356 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.38528 -39.46510 -35.79908 -35.00269 -33.45999 -32.94642 -31.59252 -30.71266 -28.36737 -27.50201 -26.44172 -23.83440 -22.61421 -22.40549 -20.79382 -20.26682 -18.61201 -17.71917 -17.15159 -16.62399 -16.51329 -16.38874 -15.86497 -15.47680 -15.05181 -14.65943 -14.46948 -14.33008 -14.22731 -13.72640 -13.43549 -13.26163 -13.07675 -12.93106 -12.78827 -12.69895 -12.65623 -12.57635 -12.36783 -12.33663 -12.04748 -11.69307 -11.52163 -11.46326 -11.36472 -11.10863 -10.73678 -10.61991 -10.30395 -10.16354 -8.23219 -6.36279 1.40903 1.43471 1.44894 1.52811 2.25251 2.44050 3.10563 3.33332 3.53550 3.63044 3.86452 3.92322 3.98994 4.07676 4.24309 4.28618 4.42338 4.44341 4.48346 4.50936 4.67516 4.69423 4.70493 4.75953 4.85033 4.89596 4.92129 4.94276 5.04790 5.07933 5.11876 5.19766 5.26227 5.33457 5.37904 5.40234 5.60062 5.71115 5.74694 5.76513 6.12605 6.18268 6.46695 6.79306 7.33399 8.89596 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.040165 B = 0.003648 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.953163 B = 7672.824925 C = 7889.681615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.160 4.160 3 C 0.120 3.880 4 C -0.155 4.155 5 C -0.135 4.135 6 C -0.150 4.150 7 C 0.100 3.900 8 H 0.067 0.933 9 C 0.110 3.890 10 C -0.168 4.168 11 C -0.168 4.168 12 O -0.396 6.396 13 C 0.087 3.913 14 C 0.031 3.969 15 C -0.547 4.547 16 H 0.066 0.934 17 C 0.002 3.998 18 N -0.932 5.932 19 Si 0.973 3.027 20 H -0.264 1.264 21 H -0.282 1.282 22 H -0.265 1.265 23 O -0.363 6.363 24 H 0.113 0.887 25 H 0.091 0.909 26 H 0.140 0.860 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.081 0.919 40 H 0.045 0.955 41 H 0.047 0.953 42 H -0.006 1.006 43 H -0.007 1.007 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.451 -19.959 -11.125 22.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.178 4.178 3 C 0.081 3.919 4 C -0.213 4.213 5 C -0.173 4.173 6 C -0.188 4.188 7 C 0.043 3.957 8 H 0.085 0.915 9 C 0.071 3.929 10 C -0.226 4.226 11 C -0.225 4.225 12 O -0.317 6.317 13 C 0.011 3.989 14 C -0.006 4.006 15 C -0.584 4.584 16 H 0.084 0.916 17 C -0.197 4.197 18 N -0.571 5.571 19 Si 0.796 3.204 20 H -0.189 1.189 21 H -0.207 1.207 22 H -0.189 1.189 23 O -0.283 6.283 24 H 0.131 0.869 25 H 0.109 0.891 26 H 0.157 0.843 27 H 0.105 0.895 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.100 0.900 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.012 0.988 43 H 0.011 0.989 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.329 -19.851 -11.120 22.793 hybrid contribution -0.271 1.009 0.547 1.180 sum -1.600 -18.842 -10.573 21.665 Atomic orbital electron populations 1.23934 0.96466 1.02261 0.98835 1.23011 0.96357 0.96521 1.01929 1.21214 0.88922 0.86077 0.95685 1.22190 0.99613 1.02815 0.96666 1.22983 1.00230 0.98171 0.95871 1.23173 1.01034 0.96324 0.98249 1.22631 0.92569 0.88802 0.91714 0.91486 1.21344 0.92281 0.87957 0.91292 1.22300 1.00644 1.01372 0.98245 1.22360 0.99207 1.00751 1.00203 1.87869 1.35504 1.40029 1.68267 1.22456 0.92420 0.88757 0.95240 1.18910 0.95379 0.92624 0.93735 1.21439 0.94087 1.11097 1.31809 0.91551 1.26020 0.96953 1.00106 0.96574 1.70115 1.14054 1.33256 1.39674 0.85390 0.78401 0.77982 0.78613 1.18893 1.20724 1.18931 1.88812 1.41129 1.25114 1.73213 0.86921 0.89051 0.84270 0.89502 0.92194 0.92690 0.89251 0.89209 0.90395 0.90704 0.89950 0.92457 0.92625 0.91903 0.92647 0.89983 0.93675 0.93534 0.98772 0.98903 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.13 14.09 67.78 0.95 -2.18 16 2 C -0.16 -2.67 8.57 25.64 0.22 -2.45 16 3 C 0.12 2.35 1.15 -11.17 -0.01 2.33 16 4 C -0.16 -2.61 8.59 71.98 0.62 -1.99 16 5 C -0.14 -2.54 6.26 31.59 0.20 -2.34 16 6 C -0.15 -3.81 6.28 31.90 0.20 -3.61 16 7 C 0.10 2.80 2.75 31.28 0.09 2.88 16 8 H 0.07 1.95 8.12 -2.39 -0.02 1.94 16 9 C 0.11 3.52 0.69 -10.79 -0.01 3.51 16 10 C -0.17 -5.00 8.13 71.98 0.58 -4.41 16 11 C -0.17 -4.87 7.75 71.98 0.56 -4.31 16 12 O -0.40 -16.24 9.80 -148.98 -1.46 -17.70 16 13 C 0.09 3.89 5.08 71.98 0.37 4.25 16 14 C 0.03 1.72 5.34 29.85 0.16 1.88 16 15 C -0.55 -31.65 9.11 25.60 0.23 -31.42 16 16 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 17 C 0.00 0.10 5.46 84.66 0.46 0.57 16 18 N -0.93 -57.59 13.29 21.45 0.28 -57.30 16 19 Si 0.97 44.23 29.54 68.60 2.03 46.26 16 20 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 22 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 23 O -0.36 -9.03 7.81 -148.98 -1.16 -10.19 16 24 H 0.11 1.51 8.06 -2.91 -0.02 1.49 16 25 H 0.09 1.94 6.87 -2.91 -0.02 1.92 16 26 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 27 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.05 1.00 8.11 -2.39 -0.02 0.98 16 30 H 0.09 1.45 7.69 -2.39 -0.02 1.43 16 31 H 0.09 1.46 7.70 -2.39 -0.02 1.44 16 32 H 0.08 2.05 5.66 -2.39 -0.01 2.04 16 33 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.08 2.16 7.76 -2.39 -0.02 2.14 16 35 H 0.06 1.74 6.54 -2.39 -0.02 1.72 16 36 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.06 1.82 6.02 -2.39 -0.01 1.81 16 38 H 0.05 1.66 6.54 -2.39 -0.02 1.64 16 39 H 0.08 2.10 7.71 -2.39 -0.02 2.08 16 40 H 0.05 1.94 6.42 -2.39 -0.02 1.92 16 41 H 0.05 1.99 6.42 -2.39 -0.02 1.97 16 42 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 43 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 44 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -65.62 343.57 5.25 -60.37 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.94 Total: 15.86 kcal Atomic # 6 Polarization: -41.91 SS G_CDS: 4.62 Total: -37.29 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: 0.28 Total: -57.30 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -2.62 Total: -27.89 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -65.62 5.25 -60.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205632645.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.854 kcal (2) G-P(sol) polarization free energy of solvation -65.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds