Wall clock time and date at job start Mon Mar 30 2020 00:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.52095 * 120.00156 * 2 1 4 4 C 1.53359 * 107.35574 * 237.72570 * 3 2 1 5 5 C 1.52776 * 107.67435 * 120.00299 * 3 2 1 6 6 C 1.52820 * 110.20570 * 193.46853 * 5 3 2 7 7 C 1.52838 * 108.82832 * 59.00548 * 6 5 3 8 8 H 1.09370 * 109.24694 * 181.15212 * 7 6 5 9 9 O 1.43019 * 109.65101 * 61.90043 * 7 6 5 10 10 C 1.42898 * 113.99613 * 90.00458 * 9 7 6 11 11 C 1.53002 * 109.46917 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.47207 * 179.97438 * 11 10 9 13 13 H 1.07994 * 119.99603 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99838 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00380 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99848 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47261 * 239.99776 * 16 14 12 19 19 H 1.48500 * 109.47454 * 119.99769 * 16 14 12 20 20 C 1.52779 * 110.25777 * 301.18661 * 7 6 5 21 21 C 1.54384 * 107.68717 * 166.22968 * 20 7 6 22 22 C 1.53384 * 109.36655 * 282.60033 * 20 7 6 23 23 O 1.40816 * 108.33369 * 357.78214 * 3 2 1 24 24 H 1.08006 * 120.00466 * 180.02562 * 1 2 3 25 25 H 1.08006 * 120.00216 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.99578 * 180.02562 * 2 1 3 27 27 H 1.08991 * 109.47305 * 303.41866 * 4 3 2 28 28 H 1.09003 * 109.47141 * 63.42328 * 4 3 2 29 29 H 1.08998 * 109.47065 * 183.42122 * 4 3 2 30 30 H 1.09305 * 109.33923 * 73.22519 * 5 3 2 31 31 H 1.09167 * 109.52146 * 314.16761 * 5 3 2 32 32 H 1.08711 * 110.48954 * 297.54353 * 6 5 3 33 33 H 1.09471 * 109.16069 * 178.04658 * 6 5 3 34 34 H 1.08993 * 109.47571 * 59.99826 * 10 9 7 35 35 H 1.09006 * 109.47135 * 299.99316 * 10 9 7 36 36 H 1.09005 * 109.47493 * 59.99717 * 11 10 9 37 37 H 1.08998 * 109.47006 * 299.99681 * 11 10 9 38 38 H 0.97001 * 119.99667 * 0.02562 * 15 14 12 39 39 H 1.09001 * 109.47084 * 60.00017 * 21 20 7 40 40 H 1.09001 * 109.47174 * 179.97438 * 21 20 7 41 41 H 1.09004 * 109.47083 * 300.00037 * 21 20 7 42 42 H 1.09004 * 109.47107 * 59.99555 * 22 20 7 43 43 H 1.09003 * 109.47232 * 179.97438 * 22 20 7 44 44 H 1.09003 * 109.47149 * 299.99894 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0705 1.3172 0.0000 4 6 2.9761 1.3225 -1.2376 5 6 2.9328 1.3549 1.2606 6 6 3.4613 2.7693 1.4964 7 6 2.2746 3.7219 1.6389 8 1 2.6454 4.7400 1.7875 9 8 1.4890 3.3453 2.7730 10 6 1.8889 3.9749 3.9919 11 6 0.9841 3.5013 5.1312 12 6 1.4061 4.1648 6.4169 13 1 2.2369 4.8548 6.4209 14 6 0.7323 3.8900 7.5879 15 7 -0.2790 3.0494 7.5831 16 14 1.2550 4.7129 9.1813 17 1 2.4102 5.6089 8.9200 18 1 1.6473 3.6755 10.1688 19 1 0.1236 5.5084 9.7221 20 6 1.4091 3.6806 0.3806 21 6 0.0691 4.3729 0.7100 22 6 2.0851 4.4960 -0.7288 23 8 1.1352 2.3686 -0.0517 24 1 -0.5401 -0.9353 0.0004 25 1 -0.5401 0.9353 0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 3.6266 0.4483 -1.2156 28 1 2.3617 1.2957 -2.1376 29 1 3.5836 2.2275 -1.2393 30 1 3.7750 0.6680 1.1437 31 1 2.3379 1.0375 2.1191 32 1 4.1007 3.0787 0.6735 33 1 4.0470 2.7844 2.4211 34 1 1.8044 5.0564 3.8870 35 1 2.9227 3.7111 4.2150 36 1 1.0681 2.4196 5.2364 37 1 -0.0496 3.7654 4.9080 38 1 -0.5507 2.6223 6.7556 39 1 0.2567 5.4046 1.0075 40 1 -0.5727 4.3601 -0.1709 41 1 -0.4226 3.8432 1.5260 42 1 3.0650 4.0710 -0.9465 43 1 1.4692 4.4673 -1.6277 44 1 2.2019 5.5289 -0.4008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205649438.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:24 Heat of formation + Delta-G solvation = -92.731590 kcal Electronic energy + Delta-G solvation = -22058.769368 eV Core-core repulsion = 18976.158978 eV Total energy + Delta-G solvation = -3082.610391 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.35702 -37.26910 -35.23221 -33.72837 -32.79887 -31.79561 -29.83071 -29.17044 -27.14992 -25.82282 -24.20917 -23.19044 -22.07714 -21.12681 -20.10472 -18.31553 -16.74187 -16.19355 -15.93818 -15.77483 -15.26246 -15.17468 -14.11602 -13.81082 -13.69738 -13.64599 -13.25390 -12.94577 -12.62502 -12.48097 -12.30801 -12.16768 -12.00183 -11.86604 -11.60611 -11.51198 -11.45721 -11.15751 -10.82396 -10.74272 -10.53759 -10.25968 -10.14038 -9.83561 -9.79014 -9.51715 -9.10572 -8.79776 -8.63535 -8.32308 -6.38646 -4.08305 2.44605 3.42385 3.44051 3.47298 3.60057 4.13105 4.55095 4.63909 4.82844 4.84852 4.91399 5.03457 5.20585 5.27519 5.32203 5.39961 5.41916 5.46349 5.53654 5.58840 5.68246 5.77968 5.83235 5.87009 5.89479 5.97884 6.00674 6.11048 6.14013 6.16213 6.28335 6.33485 6.43571 6.57369 6.74813 6.75085 6.89251 7.28594 7.51480 7.84889 7.94978 8.19761 8.43749 8.85391 9.64748 11.02903 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.026023 B = 0.004512 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.724785 B = 6204.540907 C = 6471.616595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.164 4.164 3 C 0.168 3.832 4 C -0.167 4.167 5 C -0.134 4.134 6 C -0.143 4.143 7 C 0.064 3.936 8 H 0.062 0.938 9 O -0.372 6.372 10 C 0.075 3.925 11 C 0.015 3.985 12 C -0.605 4.605 13 H 0.049 0.951 14 C 0.017 3.983 15 N -0.911 5.911 16 Si 1.076 2.924 17 H -0.289 1.289 18 H -0.286 1.286 19 H -0.286 1.286 20 C 0.140 3.860 21 C -0.138 4.138 22 C -0.171 4.171 23 O -0.368 6.368 24 H 0.091 0.909 25 H 0.111 0.889 26 H 0.115 0.885 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.035 0.965 35 H 0.034 0.966 36 H 0.014 0.986 37 H 0.015 0.985 38 H 0.271 0.729 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.076 0.924 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.312 -1.343 -18.609 19.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.182 4.182 3 C 0.128 3.872 4 C -0.224 4.224 5 C -0.172 4.172 6 C -0.181 4.181 7 C 0.005 3.995 8 H 0.080 0.920 9 O -0.292 6.292 10 C -0.001 4.001 11 C -0.022 4.022 12 C -0.643 4.643 13 H 0.068 0.932 14 C -0.187 4.187 15 N -0.547 5.547 16 Si 0.905 3.095 17 H -0.215 1.215 18 H -0.213 1.213 19 H -0.212 1.212 20 C 0.100 3.900 21 C -0.195 4.195 22 C -0.229 4.229 23 O -0.287 6.287 24 H 0.110 0.890 25 H 0.129 0.871 26 H 0.133 0.867 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.032 0.968 37 H 0.033 0.967 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.654 -1.396 -17.056 18.023 hybrid contribution 1.056 0.102 -1.466 1.810 sum 6.710 -1.294 -18.522 19.743 Atomic orbital electron populations 1.23834 0.96277 1.02034 0.98151 1.23159 0.96397 0.96020 1.02590 1.19989 0.88222 0.85278 0.93686 1.22479 0.99574 1.01894 0.98486 1.21929 0.99655 0.96909 0.98671 1.21913 0.97717 0.96073 1.02349 1.22508 0.91471 0.97356 0.88133 0.92016 1.88028 1.56046 1.69110 1.15982 1.22743 0.98526 0.95116 0.83694 1.19173 0.94812 0.96842 0.91422 1.21939 1.19081 1.29524 0.93780 0.93222 1.25851 0.94212 0.96239 1.02402 1.70696 1.25822 1.26830 1.31303 0.83449 0.75552 0.75767 0.74776 1.21545 1.21267 1.21234 1.21268 0.96011 0.81874 0.90809 1.22058 0.95575 0.99565 1.02317 1.22537 1.00947 1.00050 0.99366 1.86154 1.41819 1.16732 1.84041 0.89023 0.87116 0.86744 0.91836 0.92051 0.92475 0.91371 0.89966 0.91311 0.91177 0.94684 0.94811 0.96769 0.96679 0.91803 0.91700 0.92529 0.90456 0.92499 0.91498 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 14.06 29.02 0.41 -1.75 16 2 C -0.16 -2.07 8.53 -35.33 -0.30 -2.37 16 3 C 0.17 2.19 1.06 -91.01 -0.10 2.09 16 4 C -0.17 -1.76 8.38 37.34 0.31 -1.45 16 5 C -0.13 -1.86 4.60 -26.94 -0.12 -1.98 16 6 C -0.14 -1.98 5.44 -26.91 -0.15 -2.12 16 7 C 0.06 1.00 1.91 -26.93 -0.05 0.95 16 8 H 0.06 0.92 7.63 -51.72 -0.39 0.52 16 9 O -0.37 -7.40 8.01 -35.23 -0.28 -7.68 16 10 C 0.07 1.65 5.68 37.16 0.21 1.86 16 11 C 0.01 0.39 4.65 -27.88 -0.13 0.26 16 12 C -0.60 -17.56 9.11 -34.44 -0.31 -17.87 16 13 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 14 C 0.02 0.50 5.46 -17.82 -0.10 0.41 16 15 N -0.91 -28.42 13.65 55.43 0.76 -27.66 16 16 Si 1.08 25.57 29.90 -169.99 -5.08 20.48 16 17 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 C 0.14 1.95 0.96 -89.81 -0.09 1.86 16 21 C -0.14 -1.98 8.32 37.88 0.32 -1.66 16 22 C -0.17 -1.89 8.39 37.36 0.31 -1.58 16 23 O -0.37 -5.38 7.17 -33.91 -0.24 -5.62 16 24 H 0.09 1.01 8.06 -52.48 -0.42 0.59 16 25 H 0.11 1.60 6.83 -52.48 -0.36 1.24 16 26 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 27 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.57 5.52 -51.93 -0.29 0.29 16 30 H 0.07 0.80 8.04 -51.76 -0.42 0.39 16 31 H 0.08 1.38 7.63 -51.83 -0.40 0.99 16 32 H 0.07 0.80 6.46 -52.09 -0.34 0.46 16 33 H 0.07 1.02 7.85 -51.66 -0.41 0.61 16 34 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 35 H 0.03 0.73 7.81 -51.93 -0.41 0.32 16 36 H 0.01 0.40 8.01 -51.93 -0.42 -0.02 16 37 H 0.01 0.42 8.01 -51.93 -0.42 0.01 16 38 H 0.27 8.52 7.22 -40.82 -0.29 8.22 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.08 1.32 7.27 -51.93 -0.38 0.94 16 42 H 0.06 0.58 5.54 -51.93 -0.29 0.30 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.66 8.13 -51.93 -0.42 0.23 16 LS Contribution 341.19 15.07 5.14 5.14 Total: -1.00 -31.36 341.19 -7.29 -38.65 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -7.79 Total: 0.03 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: 0.21 Total: -23.34 kcal Atomic # 7 Polarization: -28.42 SS G_CDS: 0.76 Total: -27.66 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.53 Total: -13.30 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -5.08 Total: 20.48 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.36 -7.29 -38.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205649438.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.082 kcal (2) G-P(sol) polarization free energy of solvation -31.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds