Wall clock time and date at job start Mon Mar 30 2020 00:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.52095 * 120.00156 * 2 1 4 4 C 1.53359 * 107.35574 * 237.72570 * 3 2 1 5 5 C 1.52776 * 107.67435 * 120.00299 * 3 2 1 6 6 C 1.52820 * 110.20570 * 193.46853 * 5 3 2 7 7 C 1.52838 * 108.82832 * 59.00548 * 6 5 3 8 8 H 1.09370 * 109.24694 * 181.15212 * 7 6 5 9 9 O 1.43019 * 109.65101 * 61.90043 * 7 6 5 10 10 C 1.42898 * 113.99613 * 90.00458 * 9 7 6 11 11 C 1.53002 * 109.46917 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.47207 * 179.97438 * 11 10 9 13 13 H 1.07994 * 119.99603 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99838 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00380 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99848 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47261 * 239.99776 * 16 14 12 19 19 H 1.48500 * 109.47454 * 119.99769 * 16 14 12 20 20 C 1.52779 * 110.25777 * 301.18661 * 7 6 5 21 21 C 1.54384 * 107.68717 * 166.22968 * 20 7 6 22 22 C 1.53384 * 109.36655 * 282.60033 * 20 7 6 23 23 O 1.40816 * 108.33369 * 357.78214 * 3 2 1 24 24 H 1.08006 * 120.00466 * 180.02562 * 1 2 3 25 25 H 1.08006 * 120.00216 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.99578 * 180.02562 * 2 1 3 27 27 H 1.08991 * 109.47305 * 303.41866 * 4 3 2 28 28 H 1.09003 * 109.47141 * 63.42328 * 4 3 2 29 29 H 1.08998 * 109.47065 * 183.42122 * 4 3 2 30 30 H 1.09305 * 109.33923 * 73.22519 * 5 3 2 31 31 H 1.09167 * 109.52146 * 314.16761 * 5 3 2 32 32 H 1.08711 * 110.48954 * 297.54353 * 6 5 3 33 33 H 1.09471 * 109.16069 * 178.04658 * 6 5 3 34 34 H 1.08993 * 109.47571 * 59.99826 * 10 9 7 35 35 H 1.09006 * 109.47135 * 299.99316 * 10 9 7 36 36 H 1.09005 * 109.47493 * 59.99717 * 11 10 9 37 37 H 1.08998 * 109.47006 * 299.99681 * 11 10 9 38 38 H 0.97001 * 119.99667 * 0.02562 * 15 14 12 39 39 H 1.09001 * 109.47084 * 60.00017 * 21 20 7 40 40 H 1.09001 * 109.47174 * 179.97438 * 21 20 7 41 41 H 1.09004 * 109.47083 * 300.00037 * 21 20 7 42 42 H 1.09004 * 109.47107 * 59.99555 * 22 20 7 43 43 H 1.09003 * 109.47232 * 179.97438 * 22 20 7 44 44 H 1.09003 * 109.47149 * 299.99894 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0705 1.3172 0.0000 4 6 2.9761 1.3225 -1.2376 5 6 2.9328 1.3549 1.2606 6 6 3.4613 2.7693 1.4964 7 6 2.2746 3.7219 1.6389 8 1 2.6454 4.7400 1.7875 9 8 1.4890 3.3453 2.7730 10 6 1.8889 3.9749 3.9919 11 6 0.9841 3.5013 5.1312 12 6 1.4061 4.1648 6.4169 13 1 2.2369 4.8548 6.4209 14 6 0.7323 3.8900 7.5879 15 7 -0.2790 3.0494 7.5831 16 14 1.2550 4.7129 9.1813 17 1 2.4102 5.6089 8.9200 18 1 1.6473 3.6755 10.1688 19 1 0.1236 5.5084 9.7221 20 6 1.4091 3.6806 0.3806 21 6 0.0691 4.3729 0.7100 22 6 2.0851 4.4960 -0.7288 23 8 1.1352 2.3686 -0.0517 24 1 -0.5401 -0.9353 0.0004 25 1 -0.5401 0.9353 0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 3.6266 0.4483 -1.2156 28 1 2.3617 1.2957 -2.1376 29 1 3.5836 2.2275 -1.2393 30 1 3.7750 0.6680 1.1437 31 1 2.3379 1.0375 2.1191 32 1 4.1007 3.0787 0.6735 33 1 4.0470 2.7844 2.4211 34 1 1.8044 5.0564 3.8870 35 1 2.9227 3.7111 4.2150 36 1 1.0681 2.4196 5.2364 37 1 -0.0496 3.7654 4.9080 38 1 -0.5507 2.6223 6.7556 39 1 0.2567 5.4046 1.0075 40 1 -0.5727 4.3601 -0.1709 41 1 -0.4226 3.8432 1.5260 42 1 3.0650 4.0710 -0.9465 43 1 1.4692 4.4673 -1.6277 44 1 2.2019 5.5289 -0.4008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205649438.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:23 Heat of formation + Delta-G solvation = -110.557342 kcal Electronic energy + Delta-G solvation = -22059.542351 eV Core-core repulsion = 18976.158978 eV Total energy + Delta-G solvation = -3083.383373 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.48014 -38.70881 -36.39722 -35.70834 -34.16234 -32.83447 -31.60947 -30.36699 -28.20190 -27.02245 -26.14209 -24.38215 -23.48049 -22.81569 -21.15419 -19.61120 -18.78039 -17.54612 -17.06508 -16.97763 -16.70949 -16.27595 -15.68819 -15.48328 -15.16700 -14.81923 -14.58454 -14.15681 -13.92325 -13.69916 -13.51270 -13.38003 -13.23935 -13.09614 -13.00022 -12.97074 -12.59017 -12.55747 -12.38236 -12.04823 -11.92057 -11.83783 -11.67277 -11.47491 -11.02743 -10.84034 -10.63008 -10.58614 -10.36510 -9.98754 -8.76725 -6.48123 1.43473 1.51466 1.62018 1.78195 2.37177 2.52310 2.81147 3.10854 3.58684 3.70101 3.76577 3.86589 4.05278 4.08516 4.20229 4.22722 4.30002 4.30733 4.44189 4.53209 4.58053 4.65438 4.72852 4.75695 4.79069 4.86572 4.89612 4.91036 4.93882 4.99876 5.08128 5.15547 5.23125 5.30196 5.32008 5.39452 5.42074 5.71549 5.84443 5.89375 6.09437 6.35649 6.46191 6.90785 7.36364 8.64466 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.026023 B = 0.004512 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.724785 B = 6204.540907 C = 6471.616595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.166 4.166 3 C 0.159 3.841 4 C -0.159 4.159 5 C -0.133 4.133 6 C -0.140 4.140 7 C 0.053 3.947 8 H 0.073 0.927 9 O -0.392 6.392 10 C 0.094 3.906 11 C 0.017 3.983 12 C -0.620 4.620 13 H 0.058 0.942 14 C -0.037 4.037 15 N -0.935 5.935 16 Si 1.128 2.872 17 H -0.265 1.265 18 H -0.277 1.277 19 H -0.276 1.276 20 C 0.138 3.862 21 C -0.137 4.137 22 C -0.163 4.163 23 O -0.385 6.385 24 H 0.108 0.892 25 H 0.089 0.911 26 H 0.137 0.863 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.041 0.959 32 H 0.101 0.899 33 H 0.060 0.940 34 H 0.043 0.957 35 H 0.040 0.960 36 H -0.014 1.014 37 H -0.011 1.011 38 H 0.254 0.746 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.038 0.962 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.567 -0.450 -19.782 21.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.184 4.184 3 C 0.120 3.880 4 C -0.216 4.216 5 C -0.170 4.170 6 C -0.177 4.177 7 C -0.005 4.005 8 H 0.091 0.909 9 O -0.311 6.311 10 C 0.018 3.982 11 C -0.021 4.021 12 C -0.657 4.657 13 H 0.076 0.924 14 C -0.235 4.235 15 N -0.572 5.572 16 Si 0.948 3.052 17 H -0.190 1.190 18 H -0.203 1.203 19 H -0.202 1.202 20 C 0.098 3.902 21 C -0.195 4.195 22 C -0.221 4.221 23 O -0.305 6.305 24 H 0.126 0.874 25 H 0.108 0.892 26 H 0.155 0.845 27 H 0.100 0.900 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.060 0.940 32 H 0.119 0.881 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.004 0.996 37 H 0.007 0.993 38 H 0.063 0.937 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.057 0.943 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.916 -0.506 -18.269 19.917 hybrid contribution 0.317 -0.227 -1.173 1.236 sum 8.232 -0.733 -19.442 21.126 Atomic orbital electron populations 1.23868 0.96770 1.01894 0.99334 1.23485 0.96452 0.96981 1.01483 1.20215 0.88373 0.84902 0.94513 1.22409 0.99234 1.03234 0.96753 1.21913 1.00018 0.97524 0.97589 1.21928 0.97104 0.95554 1.03162 1.22896 0.92162 0.98429 0.87030 0.90901 1.88008 1.57412 1.69294 1.16428 1.22286 0.97192 0.95264 0.83463 1.19058 0.94519 0.95017 0.93459 1.22335 1.19196 1.29510 0.94680 0.92369 1.27605 0.93377 0.95852 1.06644 1.70848 1.27486 1.28436 1.30382 0.82815 0.76295 0.75468 0.70588 1.18957 1.20269 1.20199 1.21370 0.95451 0.82215 0.91127 1.22051 0.96294 0.99632 1.01492 1.22469 1.01301 1.00092 0.98202 1.86133 1.43092 1.17273 1.84027 0.87378 0.89249 0.84512 0.90033 0.91915 0.91556 0.88961 0.94036 0.88086 0.92143 0.93852 0.94212 0.99595 0.99309 0.93661 0.90789 0.91155 0.94287 0.91189 0.90672 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.78 14.06 67.78 0.95 -3.83 16 2 C -0.17 -4.06 8.53 26.10 0.22 -3.84 16 3 C 0.16 3.92 1.06 -11.05 -0.01 3.91 16 4 C -0.16 -2.84 8.38 72.10 0.60 -2.24 16 5 C -0.13 -3.54 4.60 30.46 0.14 -3.40 16 6 C -0.14 -3.62 5.44 30.48 0.17 -3.46 16 7 C 0.05 1.59 1.91 30.47 0.06 1.65 16 8 H 0.07 2.03 7.63 -2.19 -0.02 2.01 16 9 O -0.39 -16.03 8.01 -148.98 -1.19 -17.22 16 10 C 0.09 4.22 5.68 71.98 0.41 4.63 16 11 C 0.02 0.94 4.65 29.85 0.14 1.07 16 12 C -0.62 -36.47 9.11 25.60 0.23 -36.24 16 13 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 14 C -0.04 -2.22 5.46 84.65 0.46 -1.76 16 15 N -0.93 -59.96 13.65 21.45 0.29 -59.67 16 16 Si 1.13 50.72 29.90 68.60 2.05 52.77 16 17 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 18 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 19 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 20 C 0.14 3.69 0.96 -10.27 -0.01 3.68 16 21 C -0.14 -3.97 8.32 72.45 0.60 -3.36 16 22 C -0.16 -3.11 8.39 72.11 0.61 -2.50 16 23 O -0.38 -11.03 7.17 -144.26 -1.03 -12.06 16 24 H 0.11 2.39 8.06 -2.91 -0.02 2.36 16 25 H 0.09 2.72 6.83 -2.91 -0.02 2.70 16 26 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 27 H 0.08 1.17 8.13 -2.39 -0.02 1.15 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 1.06 5.52 -2.39 -0.01 1.05 16 30 H 0.09 1.97 8.04 -2.23 -0.02 1.95 16 31 H 0.04 1.43 7.63 -2.30 -0.02 1.41 16 32 H 0.10 1.97 6.46 -2.54 -0.02 1.96 16 33 H 0.06 1.68 7.85 -2.14 -0.02 1.66 16 34 H 0.04 1.85 8.07 -2.39 -0.02 1.83 16 35 H 0.04 1.72 7.81 -2.38 -0.02 1.70 16 36 H -0.01 -0.87 8.01 -2.38 -0.02 -0.89 16 37 H -0.01 -0.69 8.01 -2.39 -0.02 -0.71 16 38 H 0.25 16.78 7.22 -92.71 -0.67 16.11 16 39 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.04 1.40 7.27 -2.39 -0.02 1.38 16 42 H 0.07 1.15 5.54 -2.38 -0.01 1.14 16 43 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.08 1.30 8.13 -2.39 -0.02 1.28 16 Total: -1.00 -70.15 341.19 5.73 -64.42 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 1.04 Total: 17.44 kcal Atomic # 6 Polarization: -50.25 SS G_CDS: 4.57 Total: -45.68 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: 0.29 Total: -59.67 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -2.23 Total: -29.29 kcal Atomic # 14 Polarization: 50.72 SS G_CDS: 2.05 Total: 52.77 kcal Total: -70.15 5.73 -64.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205649438.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.135 kcal (2) G-P(sol) polarization free energy of solvation -70.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds