Wall clock time and date at job start Mon Mar 30 2020 00:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.52096 * 119.99958 * 2 1 4 4 C 1.53356 * 107.36270 * 122.26456 * 3 2 1 5 5 C 1.52778 * 107.67802 * 239.99767 * 3 2 1 6 6 C 1.52886 * 110.09973 * 166.71508 * 5 3 2 7 7 C 1.52906 * 108.53863 * 300.48273 * 6 5 3 8 8 H 1.09247 * 109.36218 * 299.14622 * 7 6 5 9 9 O 1.43061 * 109.46421 * 179.78160 * 7 6 5 10 10 C 1.42901 * 114.00351 * 89.99896 * 9 7 6 11 11 C 1.52998 * 109.47238 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.46889 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00218 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99936 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00026 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99719 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46918 * 90.00745 * 16 14 12 18 18 H 1.48509 * 109.46906 * 210.00262 * 16 14 12 19 19 H 1.48501 * 109.47611 * 330.00149 * 16 14 12 20 20 C 1.52796 * 110.14028 * 59.37092 * 7 6 5 21 21 C 1.54375 * 107.68388 * 193.52015 * 20 7 6 22 22 C 1.53380 * 109.38396 * 77.12512 * 20 7 6 23 23 O 1.40819 * 108.34370 * 2.22121 * 3 2 1 24 24 H 1.07995 * 119.99647 * 179.97438 * 1 2 3 25 25 H 1.08002 * 120.00047 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.00448 * 179.97438 * 2 1 3 27 27 H 1.09008 * 109.47215 * 176.59464 * 4 3 2 28 28 H 1.09001 * 109.47666 * 296.59007 * 4 3 2 29 29 H 1.08997 * 109.47163 * 56.59371 * 4 3 2 30 30 H 1.09209 * 109.45873 * 46.36623 * 5 3 2 31 31 H 1.09204 * 109.45803 * 287.05945 * 5 3 2 32 32 H 1.08630 * 110.55563 * 61.87569 * 6 5 3 33 33 H 1.09432 * 109.17391 * 181.59196 * 6 5 3 34 34 H 1.08995 * 109.47164 * 300.00690 * 10 9 7 35 35 H 1.08998 * 109.46210 * 59.99741 * 10 9 7 36 36 H 1.08992 * 109.47287 * 300.00567 * 11 10 9 37 37 H 1.09004 * 109.46896 * 60.01020 * 11 10 9 38 38 H 0.97000 * 119.99809 * 179.97438 * 15 14 12 39 39 H 1.09001 * 109.46999 * 182.30304 * 21 20 7 40 40 H 1.09001 * 109.47227 * 302.30134 * 21 20 7 41 41 H 1.09006 * 109.47286 * 62.30776 * 21 20 7 42 42 H 1.09007 * 109.47134 * 294.86586 * 22 20 7 43 43 H 1.09000 * 109.46904 * 54.85937 * 22 20 7 44 44 H 1.08994 * 109.47445 * 174.86401 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0705 1.3172 0.0000 4 6 2.9760 1.3229 1.2377 5 6 2.9328 1.3550 -1.2606 6 6 3.4638 2.7700 -1.4916 7 6 2.2732 3.7174 -1.6431 8 1 1.6744 3.4117 -2.5042 9 8 2.7484 5.0500 -1.8554 10 6 2.9419 5.3859 -3.2308 11 6 3.4479 6.8258 -3.3378 12 6 3.6514 7.1802 -4.7883 13 1 3.4405 6.4515 -5.5570 14 6 4.1057 8.4352 -5.1342 15 7 4.3621 9.3228 -4.1982 16 14 4.3573 8.8746 -6.9323 17 1 3.1030 9.4494 -7.4815 18 1 5.4517 9.8716 -7.0498 19 1 4.7172 7.6524 -7.6950 20 6 1.4075 3.6798 -0.3846 21 6 0.0669 4.3695 -0.7168 22 6 2.0825 4.4994 0.7223 23 8 1.1354 2.3688 0.0518 24 1 -0.5399 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8501 -0.9352 0.0004 27 1 3.5833 2.2281 1.2395 28 1 2.3616 1.2959 2.1376 29 1 3.6268 0.4488 1.2157 30 1 2.3341 1.0465 -2.1203 31 1 3.7722 0.6657 -1.1480 32 1 4.0949 3.0804 -0.6637 33 1 4.0551 2.7861 -2.4123 34 1 3.6747 4.7092 -3.6704 35 1 1.9958 5.2929 -3.7640 36 1 2.7148 7.5021 -2.8983 37 1 4.3940 6.9191 -2.8046 38 1 4.6821 10.2056 -4.4416 39 1 -0.5592 4.3953 0.1751 40 1 0.2566 5.3875 -1.0572 41 1 -0.4432 3.8126 -1.5028 42 1 3.0215 4.0236 1.0055 43 1 2.2813 5.5073 0.3581 44 1 1.4246 4.5497 1.5898 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205649441.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:26 Heat of formation + Delta-G solvation = -90.099674 kcal Electronic energy + Delta-G solvation = -21750.811883 eV Core-core repulsion = 18668.315620 eV Total energy + Delta-G solvation = -3082.496262 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.37564 -37.40717 -35.18729 -33.54354 -32.73746 -31.82226 -29.86190 -29.48593 -27.04929 -25.82356 -24.58578 -23.22351 -21.99279 -20.89907 -20.27328 -18.29853 -16.73673 -16.14017 -16.03561 -15.69276 -15.13276 -14.90272 -14.51059 -14.09885 -13.65699 -13.60371 -13.25780 -13.03659 -12.52851 -12.38058 -12.27076 -12.00646 -11.97188 -11.84797 -11.77046 -11.52521 -11.21940 -11.08434 -10.90701 -10.82866 -10.57307 -10.41391 -10.28640 -9.95302 -9.61463 -9.49239 -9.23021 -9.15953 -8.78025 -8.36908 -6.04838 -4.08451 2.23170 3.29643 3.34995 3.36281 3.39059 4.15180 4.45254 4.59538 4.76448 4.77547 4.95047 4.98498 5.17123 5.24211 5.31352 5.32311 5.42292 5.48986 5.55402 5.64315 5.80267 5.82437 5.90630 5.91956 5.97208 5.97976 6.07845 6.13522 6.16158 6.24801 6.32002 6.36990 6.46591 6.54317 6.57203 6.70218 6.87546 7.49670 7.75093 7.77066 7.89141 8.09810 8.34355 8.98088 9.55407 11.06745 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.034588 B = 0.003881 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.334042 B = 7213.674645 C = 7363.372194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.161 4.161 3 C 0.163 3.837 4 C -0.168 4.168 5 C -0.137 4.137 6 C -0.145 4.145 7 C 0.068 3.932 8 H 0.059 0.941 9 O -0.375 6.375 10 C 0.069 3.931 11 C 0.027 3.973 12 C -0.524 4.524 13 H 0.056 0.944 14 C 0.060 3.940 15 N -0.891 5.891 16 Si 0.896 3.104 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.137 3.863 21 C -0.140 4.140 22 C -0.164 4.164 23 O -0.373 6.373 24 H 0.092 0.908 25 H 0.111 0.889 26 H 0.116 0.884 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.033 0.967 35 H 0.034 0.966 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.262 0.738 39 H 0.060 0.940 40 H 0.081 0.919 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.082 0.918 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.667 -17.304 9.666 20.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.179 4.179 3 C 0.124 3.876 4 C -0.226 4.226 5 C -0.175 4.175 6 C -0.183 4.183 7 C 0.009 3.991 8 H 0.077 0.923 9 O -0.294 6.294 10 C -0.007 4.007 11 C -0.010 4.010 12 C -0.563 4.563 13 H 0.074 0.926 14 C -0.142 4.142 15 N -0.529 5.529 16 Si 0.723 3.277 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.198 1.198 20 C 0.098 3.902 21 C -0.197 4.197 22 C -0.221 4.221 23 O -0.293 6.293 24 H 0.110 0.890 25 H 0.129 0.871 26 H 0.134 0.866 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.101 0.899 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.723 -17.014 9.895 20.498 hybrid contribution 0.522 0.086 -1.365 1.464 sum -5.201 -16.928 8.530 19.656 Atomic orbital electron populations 1.23849 0.96266 1.02038 0.98721 1.23237 0.96382 0.96193 1.02081 1.20045 0.88299 0.85171 0.94112 1.22474 0.99602 1.02307 0.98180 1.22105 0.99844 0.97659 0.97909 1.21988 0.98771 0.94125 1.03393 1.22439 0.94148 0.85124 0.97360 0.92306 1.87983 1.86236 1.27300 1.27925 1.22933 0.98109 1.00025 0.79643 1.19051 0.97047 0.87931 0.96994 1.21051 1.45029 0.98370 0.91810 0.92618 1.24988 0.95335 0.96346 0.97560 1.69979 1.45119 1.05469 1.32378 0.86540 0.77890 0.78287 0.84963 1.20554 1.21107 1.19843 1.21203 0.95424 0.80964 0.92570 1.22188 0.95119 1.00826 1.01575 1.22383 1.00061 1.01713 0.97969 1.86183 1.41863 1.17123 1.84137 0.88977 0.87128 0.86595 0.91883 0.91932 0.91835 0.91233 0.90639 0.90654 0.91088 0.94835 0.94730 0.95755 0.95792 0.92842 0.92130 0.90066 0.92588 0.92834 0.89903 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 14.06 29.01 0.41 -1.32 16 2 C -0.16 -1.62 8.54 -35.33 -0.30 -1.93 16 3 C 0.16 1.87 1.06 -91.01 -0.10 1.77 16 4 C -0.17 -1.74 8.37 37.34 0.31 -1.43 16 5 C -0.14 -1.58 4.74 -26.90 -0.13 -1.71 16 6 C -0.15 -2.02 5.37 -26.84 -0.14 -2.17 16 7 C 0.07 1.07 1.79 -26.88 -0.05 1.02 16 8 H 0.06 0.93 7.65 -51.79 -0.40 0.54 16 9 O -0.37 -7.28 8.30 -35.23 -0.29 -7.57 16 10 C 0.07 1.48 5.68 37.16 0.21 1.69 16 11 C 0.03 0.71 5.34 -27.89 -0.15 0.57 16 12 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 16 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 C 0.14 1.95 0.99 -89.81 -0.09 1.86 16 21 C -0.14 -1.90 8.54 37.88 0.32 -1.57 16 22 C -0.16 -2.32 8.24 37.35 0.31 -2.01 16 23 O -0.37 -4.95 7.17 -33.92 -0.24 -5.19 16 24 H 0.09 0.75 8.06 -52.49 -0.42 0.32 16 25 H 0.11 1.25 6.83 -52.49 -0.36 0.89 16 26 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 27 H 0.06 0.70 5.38 -51.92 -0.28 0.42 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.81 8.04 -51.81 -0.42 0.39 16 31 H 0.07 0.74 8.04 -51.81 -0.42 0.32 16 32 H 0.07 1.06 6.51 -52.14 -0.34 0.73 16 33 H 0.07 1.02 7.91 -51.68 -0.41 0.61 16 34 H 0.03 0.70 7.88 -51.93 -0.41 0.29 16 35 H 0.03 0.72 8.08 -51.93 -0.42 0.30 16 36 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.08 1.19 7.94 -51.93 -0.41 0.78 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.73 5.48 -51.92 -0.28 0.45 16 43 H 0.08 1.32 7.14 -51.93 -0.37 0.95 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 342.92 15.07 5.17 5.17 Total: -1.00 -29.81 342.92 -7.31 -37.12 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -7.86 Total: -1.15 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: 0.20 Total: -18.80 kcal Atomic # 7 Polarization: -26.82 SS G_CDS: 0.74 Total: -26.09 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -0.54 Total: -12.77 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.81 -7.31 -37.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205649441.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.981 kcal (2) G-P(sol) polarization free energy of solvation -29.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds