Wall clock time and date at job start Mon Mar 30 2020 00:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.52096 * 119.99958 * 2 1 4 4 C 1.53356 * 107.36270 * 122.26456 * 3 2 1 5 5 C 1.52778 * 107.67802 * 239.99767 * 3 2 1 6 6 C 1.52886 * 110.09973 * 166.71508 * 5 3 2 7 7 C 1.52906 * 108.53863 * 300.48273 * 6 5 3 8 8 H 1.09247 * 109.36218 * 299.14622 * 7 6 5 9 9 O 1.43061 * 109.46421 * 179.78160 * 7 6 5 10 10 C 1.42901 * 114.00351 * 89.99896 * 9 7 6 11 11 C 1.52998 * 109.47238 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.46889 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00218 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99936 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00026 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99719 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46918 * 90.00745 * 16 14 12 18 18 H 1.48509 * 109.46906 * 210.00262 * 16 14 12 19 19 H 1.48501 * 109.47611 * 330.00149 * 16 14 12 20 20 C 1.52796 * 110.14028 * 59.37092 * 7 6 5 21 21 C 1.54375 * 107.68388 * 193.52015 * 20 7 6 22 22 C 1.53380 * 109.38396 * 77.12512 * 20 7 6 23 23 O 1.40819 * 108.34370 * 2.22121 * 3 2 1 24 24 H 1.07995 * 119.99647 * 179.97438 * 1 2 3 25 25 H 1.08002 * 120.00047 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.00448 * 179.97438 * 2 1 3 27 27 H 1.09008 * 109.47215 * 176.59464 * 4 3 2 28 28 H 1.09001 * 109.47666 * 296.59007 * 4 3 2 29 29 H 1.08997 * 109.47163 * 56.59371 * 4 3 2 30 30 H 1.09209 * 109.45873 * 46.36623 * 5 3 2 31 31 H 1.09204 * 109.45803 * 287.05945 * 5 3 2 32 32 H 1.08630 * 110.55563 * 61.87569 * 6 5 3 33 33 H 1.09432 * 109.17391 * 181.59196 * 6 5 3 34 34 H 1.08995 * 109.47164 * 300.00690 * 10 9 7 35 35 H 1.08998 * 109.46210 * 59.99741 * 10 9 7 36 36 H 1.08992 * 109.47287 * 300.00567 * 11 10 9 37 37 H 1.09004 * 109.46896 * 60.01020 * 11 10 9 38 38 H 0.97000 * 119.99809 * 179.97438 * 15 14 12 39 39 H 1.09001 * 109.46999 * 182.30304 * 21 20 7 40 40 H 1.09001 * 109.47227 * 302.30134 * 21 20 7 41 41 H 1.09006 * 109.47286 * 62.30776 * 21 20 7 42 42 H 1.09007 * 109.47134 * 294.86586 * 22 20 7 43 43 H 1.09000 * 109.46904 * 54.85937 * 22 20 7 44 44 H 1.08994 * 109.47445 * 174.86401 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0705 1.3172 0.0000 4 6 2.9760 1.3229 1.2377 5 6 2.9328 1.3550 -1.2606 6 6 3.4638 2.7700 -1.4916 7 6 2.2732 3.7174 -1.6431 8 1 1.6744 3.4117 -2.5042 9 8 2.7484 5.0500 -1.8554 10 6 2.9419 5.3859 -3.2308 11 6 3.4479 6.8258 -3.3378 12 6 3.6514 7.1802 -4.7883 13 1 3.4405 6.4515 -5.5570 14 6 4.1057 8.4352 -5.1342 15 7 4.3621 9.3228 -4.1982 16 14 4.3573 8.8746 -6.9323 17 1 3.1030 9.4494 -7.4815 18 1 5.4517 9.8716 -7.0498 19 1 4.7172 7.6524 -7.6950 20 6 1.4075 3.6798 -0.3846 21 6 0.0669 4.3695 -0.7168 22 6 2.0825 4.4994 0.7223 23 8 1.1354 2.3688 0.0518 24 1 -0.5399 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8501 -0.9352 0.0004 27 1 3.5833 2.2281 1.2395 28 1 2.3616 1.2959 2.1376 29 1 3.6268 0.4488 1.2157 30 1 2.3341 1.0465 -2.1203 31 1 3.7722 0.6657 -1.1480 32 1 4.0949 3.0804 -0.6637 33 1 4.0551 2.7861 -2.4123 34 1 3.6747 4.7092 -3.6704 35 1 1.9958 5.2929 -3.7640 36 1 2.7148 7.5021 -2.8983 37 1 4.3940 6.9191 -2.8046 38 1 4.6821 10.2056 -4.4416 39 1 -0.5592 4.3953 0.1751 40 1 0.2566 5.3875 -1.0572 41 1 -0.4432 3.8126 -1.5028 42 1 3.0215 4.0236 1.0055 43 1 2.2813 5.5073 0.3581 44 1 1.4246 4.5497 1.5898 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205649441.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:26 Heat of formation + Delta-G solvation = -106.158126 kcal Electronic energy + Delta-G solvation = -21751.508229 eV Core-core repulsion = 18668.315620 eV Total energy + Delta-G solvation = -3083.192609 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.46219 -38.80463 -36.27270 -35.40262 -34.13837 -32.80358 -31.71904 -30.51588 -28.18920 -27.15210 -26.30905 -24.36967 -23.03990 -22.85858 -21.13856 -19.44499 -18.66487 -17.41825 -17.21791 -16.94818 -16.59395 -16.30436 -16.11449 -15.22813 -14.92487 -14.67954 -14.54320 -14.21048 -14.15555 -13.50066 -13.48427 -13.41038 -13.17310 -12.99739 -12.89041 -12.81988 -12.75778 -12.55123 -12.36411 -12.34950 -11.94599 -11.84124 -11.50770 -11.46576 -11.34147 -11.08417 -10.62611 -10.56575 -10.27383 -10.00161 -8.24448 -6.37486 1.40319 1.42409 1.47806 1.53491 2.29613 2.39844 2.84145 3.09543 3.62723 3.70702 3.74663 3.84176 3.98906 4.09190 4.22573 4.37415 4.40324 4.45183 4.48019 4.53325 4.61838 4.72292 4.79314 4.83430 4.88563 4.91092 4.92823 4.95063 4.95523 5.06245 5.10544 5.20611 5.34200 5.37692 5.39777 5.42600 5.57823 5.71824 5.77365 5.92961 6.10547 6.36901 6.78247 6.85454 7.32344 8.88453 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.034588 B = 0.003881 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.334042 B = 7213.674645 C = 7363.372194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.163 4.163 3 C 0.151 3.849 4 C -0.166 4.166 5 C -0.131 4.131 6 C -0.143 4.143 7 C 0.062 3.938 8 H 0.058 0.942 9 O -0.389 6.389 10 C 0.087 3.913 11 C 0.032 3.968 12 C -0.546 4.546 13 H 0.066 0.934 14 C 0.002 3.998 15 N -0.931 5.931 16 Si 0.972 3.028 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.261 1.261 20 C 0.142 3.858 21 C -0.139 4.139 22 C -0.160 4.160 23 O -0.376 6.376 24 H 0.113 0.887 25 H 0.094 0.906 26 H 0.141 0.859 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.041 0.959 35 H 0.042 0.958 36 H -0.005 1.005 37 H -0.006 1.006 38 H 0.266 0.734 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.864 -19.453 9.000 22.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.180 4.180 3 C 0.112 3.888 4 C -0.223 4.223 5 C -0.169 4.169 6 C -0.181 4.181 7 C 0.004 3.996 8 H 0.076 0.924 9 O -0.309 6.309 10 C 0.011 3.989 11 C -0.006 4.006 12 C -0.584 4.584 13 H 0.084 0.916 14 C -0.196 4.196 15 N -0.571 5.571 16 Si 0.796 3.204 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.185 1.185 20 C 0.102 3.898 21 C -0.196 4.196 22 C -0.217 4.217 23 O -0.296 6.296 24 H 0.131 0.869 25 H 0.112 0.888 26 H 0.159 0.841 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.013 0.987 37 H 0.012 0.988 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.929 -19.189 9.239 22.107 hybrid contribution 0.566 0.720 -1.062 1.402 sum -5.363 -18.469 8.177 20.898 Atomic orbital electron populations 1.23934 0.96443 1.02291 0.98622 1.23366 0.96452 0.96102 1.02120 1.20328 0.88615 0.85316 0.94544 1.22457 0.99523 1.02775 0.97542 1.22091 1.00617 0.96165 0.97986 1.21958 0.97860 0.95378 1.02924 1.22690 0.95240 0.83467 0.98212 0.92374 1.87951 1.86673 1.29932 1.26325 1.22485 0.98319 0.96990 0.81102 1.18893 0.94866 0.90729 0.96080 1.21464 1.45230 0.99044 0.92674 0.91629 1.26015 0.94672 0.96147 1.02814 1.70121 1.45837 1.06023 1.35074 0.85341 0.78099 0.78365 0.78594 1.19564 1.20615 1.18464 1.21080 0.95163 0.81843 0.91674 1.22158 0.95233 0.99815 1.02385 1.22329 1.00607 1.00359 0.98442 1.86194 1.42630 1.16781 1.83984 0.86934 0.88806 0.84148 0.93001 0.92015 0.89688 0.91190 0.88297 0.91076 0.91730 0.94059 0.94007 0.98659 0.98772 0.92543 0.90744 0.91817 0.92060 0.92564 0.92281 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.11 14.06 67.78 0.95 -2.16 16 2 C -0.16 -2.80 8.54 26.09 0.22 -2.58 16 3 C 0.15 3.14 1.06 -11.05 -0.01 3.13 16 4 C -0.17 -3.07 8.37 72.10 0.60 -2.46 16 5 C -0.13 -2.73 4.74 30.48 0.14 -2.58 16 6 C -0.14 -3.88 5.37 30.53 0.16 -3.72 16 7 C 0.06 1.94 1.79 30.50 0.05 2.00 16 8 H 0.06 1.82 7.65 -2.26 -0.02 1.81 16 9 O -0.39 -15.52 8.30 -148.98 -1.24 -16.75 16 10 C 0.09 3.83 5.68 71.98 0.41 4.24 16 11 C 0.03 1.74 5.34 29.85 0.16 1.90 16 12 C -0.55 -31.41 9.11 25.60 0.23 -31.18 16 13 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 14 C 0.00 0.11 5.46 84.66 0.46 0.57 16 15 N -0.93 -57.28 13.29 21.45 0.28 -57.00 16 16 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 20 C 0.14 3.97 0.99 -10.27 -0.01 3.96 16 21 C -0.14 -3.75 8.54 72.45 0.62 -3.13 16 22 C -0.16 -4.56 8.24 72.11 0.59 -3.96 16 23 O -0.38 -9.47 7.17 -144.28 -1.03 -10.51 16 24 H 0.11 1.50 8.06 -2.91 -0.02 1.48 16 25 H 0.09 1.98 6.83 -2.91 -0.02 1.96 16 26 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 27 H 0.05 1.07 5.38 -2.38 -0.01 1.06 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.47 8.04 -2.28 -0.02 1.45 16 31 H 0.10 1.62 8.04 -2.28 -0.02 1.60 16 32 H 0.07 1.97 6.51 -2.58 -0.02 1.96 16 33 H 0.06 1.81 7.91 -2.16 -0.02 1.79 16 34 H 0.04 1.74 7.88 -2.39 -0.02 1.72 16 35 H 0.04 1.76 8.08 -2.39 -0.02 1.74 16 36 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 37 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 38 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 39 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.06 1.93 7.94 -2.39 -0.02 1.91 16 41 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 42 H 0.06 1.54 5.48 -2.38 -0.01 1.53 16 43 H 0.06 1.96 7.14 -2.39 -0.02 1.94 16 44 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -64.75 342.92 5.57 -59.18 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.94 Total: 14.99 kcal Atomic # 6 Polarization: -40.57 SS G_CDS: 4.60 Total: -35.97 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 0.28 Total: -57.00 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -2.27 Total: -27.26 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -64.75 5.57 -59.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205649441.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.979 kcal (2) G-P(sol) polarization free energy of solvation -64.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds