Wall clock time and date at job start Mon Mar 30 2020 00:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.52104 * 119.99920 * 2 1 4 4 C 1.53349 * 107.35752 * 122.26927 * 3 2 1 5 5 C 1.52776 * 107.67120 * 239.99744 * 3 2 1 6 6 C 1.52833 * 110.19434 * 166.58029 * 5 3 2 7 7 C 1.52829 * 108.83548 * 300.99089 * 6 5 3 8 8 H 1.09373 * 109.23624 * 178.80205 * 7 6 5 9 9 O 1.43027 * 109.64886 * 298.03063 * 7 6 5 10 10 C 1.42893 * 113.99940 * 271.15865 * 9 7 6 11 11 C 1.53002 * 109.47148 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47435 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00033 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99804 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00316 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99770 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47060 * 60.00145 * 16 14 12 18 18 H 1.48502 * 109.47128 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47267 * 300.00035 * 16 14 12 20 20 C 1.52770 * 110.27735 * 58.75739 * 7 6 5 21 21 C 1.53391 * 109.36707 * 77.46748 * 20 7 6 22 22 C 1.54391 * 107.68035 * 193.82440 * 20 7 6 23 23 O 1.40811 * 112.85919 * 313.33798 * 20 7 6 24 24 H 1.07999 * 120.00212 * 180.02562 * 1 2 3 25 25 H 1.08000 * 120.00179 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.00179 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47488 * 176.58424 * 4 3 2 28 28 H 1.09006 * 109.47063 * 296.58637 * 4 3 2 29 29 H 1.09002 * 109.47561 * 56.57938 * 4 3 2 30 30 H 1.09163 * 109.52554 * 45.89176 * 5 3 2 31 31 H 1.09299 * 109.34106 * 286.81605 * 5 3 2 32 32 H 1.09468 * 109.15142 * 181.94291 * 6 5 3 33 33 H 1.08717 * 110.48812 * 62.45085 * 6 5 3 34 34 H 1.08998 * 109.47414 * 299.99799 * 10 9 7 35 35 H 1.08995 * 109.47711 * 60.00256 * 10 9 7 36 36 H 1.08999 * 109.47170 * 300.00220 * 11 10 9 37 37 H 1.09004 * 109.46965 * 60.00043 * 11 10 9 38 38 H 0.97000 * 119.99894 * 180.02562 * 15 14 12 39 39 H 1.09002 * 109.47270 * 176.56208 * 21 20 7 40 40 H 1.09001 * 109.46996 * 56.56227 * 21 20 7 41 41 H 1.09004 * 109.46979 * 296.56280 * 21 20 7 42 42 H 1.08996 * 109.47397 * 302.33301 * 22 20 7 43 43 H 1.08999 * 109.47034 * 62.33458 * 22 20 7 44 44 H 1.08998 * 109.46918 * 182.33468 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0705 1.3173 0.0000 4 6 2.9760 1.3228 1.2376 5 6 2.9327 1.3550 -1.2606 6 6 3.4621 2.7693 -1.4956 7 6 2.2762 3.7228 -1.6376 8 1 2.6479 4.7408 -1.7848 9 8 1.4912 3.3483 -2.7730 10 6 1.9089 3.9592 -3.9954 11 6 1.0033 3.4897 -5.1357 12 6 1.4433 4.1345 -6.4248 13 1 2.2851 4.8112 -6.4302 14 6 0.7720 3.8597 -7.5973 15 7 -0.2527 3.0354 -7.5907 16 14 1.3170 4.6595 -9.1950 17 1 2.7214 4.2750 -9.4871 18 1 0.4381 4.2037 -10.3018 19 1 1.2246 6.1360 -9.0662 20 6 1.4095 3.6806 -0.3802 21 6 2.0843 4.4957 0.7303 22 6 0.0698 4.3732 -0.7107 23 8 1.1352 2.3687 0.0514 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 3.5834 2.2278 1.2394 28 1 2.3615 1.2958 2.1375 29 1 3.6266 0.4485 1.2157 30 1 2.3376 1.0386 -2.1193 31 1 3.7745 0.6676 -1.1441 32 1 4.0479 2.7844 -2.4202 33 1 4.1016 3.0779 -0.6724 34 1 1.8418 5.0431 -3.9014 35 1 2.9395 3.6762 -4.2095 36 1 1.0699 2.4059 -5.2299 37 1 -0.0272 3.7731 -4.9215 38 1 -0.7247 2.8418 -8.4157 39 1 1.4388 4.5177 1.6083 40 1 2.2565 5.5136 0.3803 41 1 3.0372 4.0351 0.9912 42 1 0.2608 5.3922 -1.0471 43 1 -0.4404 3.8200 -1.4992 44 1 -0.5568 4.3964 0.1808 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205649443.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:29 Heat of formation + Delta-G solvation = -88.288522 kcal Electronic energy + Delta-G solvation = -22018.279281 eV Core-core repulsion = 18935.861556 eV Total energy + Delta-G solvation = -3082.417725 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.29421 -37.17108 -35.16207 -33.46155 -32.66590 -31.74104 -29.94108 -29.24514 -27.09416 -25.82420 -24.55545 -23.16916 -21.99805 -20.76754 -20.04395 -18.22966 -16.52639 -16.02337 -15.87046 -15.65160 -15.16187 -15.01835 -14.50131 -14.01297 -13.60476 -13.56794 -13.05082 -12.84919 -12.52216 -12.32720 -12.25974 -12.18010 -11.97257 -11.92824 -11.52040 -11.43912 -11.24013 -11.04528 -10.85565 -10.69522 -10.49977 -10.43210 -10.14948 -9.75254 -9.61660 -9.37654 -9.19911 -9.03357 -8.71425 -8.34211 -6.02281 -4.06086 2.49940 3.31950 3.36358 3.38259 3.49678 4.19447 4.48281 4.69569 4.88878 4.91096 4.97366 5.08861 5.26688 5.33556 5.33815 5.38304 5.47053 5.50794 5.59528 5.63582 5.74265 5.83553 5.88837 5.92072 5.95561 6.03776 6.07164 6.16356 6.22439 6.27517 6.36716 6.40172 6.50429 6.64779 6.80274 6.91060 6.94783 7.56272 7.80792 7.83412 7.99680 8.13455 8.37137 9.00368 9.57519 11.09208 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.025943 B = 0.004496 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.023665 B = 6226.659379 C = 6493.147275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.164 4.164 3 C 0.168 3.832 4 C -0.167 4.167 5 C -0.134 4.134 6 C -0.143 4.143 7 C 0.064 3.936 8 H 0.061 0.939 9 O -0.370 6.370 10 C 0.068 3.932 11 C 0.028 3.972 12 C -0.525 4.525 13 H 0.054 0.946 14 C 0.060 3.940 15 N -0.891 5.891 16 Si 0.895 3.105 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.276 1.276 20 C 0.140 3.860 21 C -0.172 4.172 22 C -0.137 4.137 23 O -0.368 6.368 24 H 0.091 0.909 25 H 0.111 0.889 26 H 0.114 0.886 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.033 0.967 35 H 0.032 0.968 36 H 0.023 0.977 37 H 0.024 0.976 38 H 0.262 0.738 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.811 -1.568 18.251 19.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.182 4.182 3 C 0.128 3.872 4 C -0.224 4.224 5 C -0.172 4.172 6 C -0.181 4.181 7 C 0.005 3.995 8 H 0.079 0.921 9 O -0.290 6.290 10 C -0.008 4.008 11 C -0.009 4.009 12 C -0.563 4.563 13 H 0.073 0.927 14 C -0.142 4.142 15 N -0.529 5.529 16 Si 0.723 3.277 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 C 0.101 3.899 21 C -0.229 4.229 22 C -0.194 4.194 23 O -0.287 6.287 24 H 0.109 0.891 25 H 0.129 0.871 26 H 0.132 0.868 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.041 0.959 37 H 0.042 0.958 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.354 -1.810 18.191 19.049 hybrid contribution 0.935 0.602 -1.140 1.593 sum 6.289 -1.208 17.051 18.214 Atomic orbital electron populations 1.23829 0.96276 1.02029 0.98125 1.23155 0.96394 0.96010 1.02615 1.19983 0.88217 0.85289 0.93668 1.22487 0.99580 1.01859 0.98521 1.21932 0.99633 0.96906 0.98708 1.21920 0.97772 0.96096 1.02303 1.22506 0.91468 0.97285 0.88243 0.92096 1.88047 1.55101 1.70197 1.15607 1.22912 0.98640 0.95236 0.84001 1.19028 0.94819 0.97368 0.89678 1.21017 1.15264 1.27537 0.92487 0.92726 1.24982 0.94927 0.95174 0.99097 1.69972 1.20226 1.35014 1.27688 0.86611 0.78545 0.79713 0.82845 1.20208 1.21165 1.20185 1.21262 0.96039 0.81834 0.90809 1.22543 1.00987 1.00047 0.99336 1.22050 0.95555 0.99698 1.02123 1.86151 1.41774 1.16725 1.84084 0.89064 0.87084 0.86788 0.92474 0.92091 0.91873 0.89832 0.91445 0.91152 0.91435 0.94892 0.95009 0.95870 0.95790 0.92805 0.91582 0.91673 0.92479 0.91679 0.90370 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 14.06 29.02 0.41 -1.77 16 2 C -0.16 -2.09 8.53 -35.33 -0.30 -2.39 16 3 C 0.17 2.21 1.06 -91.01 -0.10 2.11 16 4 C -0.17 -1.78 8.37 37.34 0.31 -1.46 16 5 C -0.13 -1.87 4.60 -26.93 -0.12 -1.99 16 6 C -0.14 -1.99 5.42 -26.90 -0.15 -2.13 16 7 C 0.06 0.99 1.91 -26.94 -0.05 0.94 16 8 H 0.06 0.90 7.60 -51.72 -0.39 0.51 16 9 O -0.37 -7.38 8.06 -35.23 -0.28 -7.66 16 10 C 0.07 1.48 5.67 37.16 0.21 1.69 16 11 C 0.03 0.76 5.34 -27.88 -0.15 0.61 16 12 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 13 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -27.05 13.29 55.43 0.74 -26.32 16 16 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 C 0.14 1.96 0.96 -89.81 -0.09 1.88 16 21 C -0.17 -1.91 8.42 37.36 0.31 -1.59 16 22 C -0.14 -1.97 8.27 37.89 0.31 -1.66 16 23 O -0.37 -5.42 7.17 -33.89 -0.24 -5.66 16 24 H 0.09 1.02 8.06 -52.49 -0.42 0.60 16 25 H 0.11 1.62 6.83 -52.49 -0.36 1.26 16 26 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 27 H 0.06 0.58 5.42 -51.93 -0.28 0.30 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 30 H 0.08 1.41 7.64 -51.84 -0.40 1.02 16 31 H 0.07 0.80 8.04 -51.76 -0.42 0.38 16 32 H 0.07 1.02 7.75 -51.66 -0.40 0.62 16 33 H 0.07 0.79 6.54 -52.09 -0.34 0.45 16 34 H 0.03 0.69 8.07 -51.93 -0.42 0.27 16 35 H 0.03 0.67 7.71 -51.93 -0.40 0.27 16 36 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.65 8.07 -51.93 -0.42 0.24 16 41 H 0.06 0.59 5.51 -51.93 -0.29 0.31 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.08 1.34 7.37 -51.93 -0.38 0.95 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 342.26 15.07 5.16 5.16 Total: -1.00 -30.60 342.26 -7.30 -37.90 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -7.84 Total: -0.60 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 0.19 Total: -19.45 kcal Atomic # 7 Polarization: -27.05 SS G_CDS: 0.74 Total: -26.32 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.53 Total: -13.32 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.60 -7.30 -37.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205649443.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.391 kcal (2) G-P(sol) polarization free energy of solvation -30.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds