Wall clock time and date at job start Mon Mar 30 2020 00:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.52104 * 119.99920 * 2 1 4 4 C 1.53349 * 107.35752 * 122.26927 * 3 2 1 5 5 C 1.52776 * 107.67120 * 239.99744 * 3 2 1 6 6 C 1.52833 * 110.19434 * 166.58029 * 5 3 2 7 7 C 1.52829 * 108.83548 * 300.99089 * 6 5 3 8 8 H 1.09373 * 109.23624 * 178.80205 * 7 6 5 9 9 O 1.43027 * 109.64886 * 298.03063 * 7 6 5 10 10 C 1.42893 * 113.99940 * 271.15865 * 9 7 6 11 11 C 1.53002 * 109.47148 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47435 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00033 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99804 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00316 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99770 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47060 * 60.00145 * 16 14 12 18 18 H 1.48502 * 109.47128 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47267 * 300.00035 * 16 14 12 20 20 C 1.52770 * 110.27735 * 58.75739 * 7 6 5 21 21 C 1.53391 * 109.36707 * 77.46748 * 20 7 6 22 22 C 1.54391 * 107.68035 * 193.82440 * 20 7 6 23 23 O 1.40811 * 112.85919 * 313.33798 * 20 7 6 24 24 H 1.07999 * 120.00212 * 180.02562 * 1 2 3 25 25 H 1.08000 * 120.00179 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.00179 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47488 * 176.58424 * 4 3 2 28 28 H 1.09006 * 109.47063 * 296.58637 * 4 3 2 29 29 H 1.09002 * 109.47561 * 56.57938 * 4 3 2 30 30 H 1.09163 * 109.52554 * 45.89176 * 5 3 2 31 31 H 1.09299 * 109.34106 * 286.81605 * 5 3 2 32 32 H 1.09468 * 109.15142 * 181.94291 * 6 5 3 33 33 H 1.08717 * 110.48812 * 62.45085 * 6 5 3 34 34 H 1.08998 * 109.47414 * 299.99799 * 10 9 7 35 35 H 1.08995 * 109.47711 * 60.00256 * 10 9 7 36 36 H 1.08999 * 109.47170 * 300.00220 * 11 10 9 37 37 H 1.09004 * 109.46965 * 60.00043 * 11 10 9 38 38 H 0.97000 * 119.99894 * 180.02562 * 15 14 12 39 39 H 1.09002 * 109.47270 * 176.56208 * 21 20 7 40 40 H 1.09001 * 109.46996 * 56.56227 * 21 20 7 41 41 H 1.09004 * 109.46979 * 296.56280 * 21 20 7 42 42 H 1.08996 * 109.47397 * 302.33301 * 22 20 7 43 43 H 1.08999 * 109.47034 * 62.33458 * 22 20 7 44 44 H 1.08998 * 109.46918 * 182.33468 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0705 1.3173 0.0000 4 6 2.9760 1.3228 1.2376 5 6 2.9327 1.3550 -1.2606 6 6 3.4621 2.7693 -1.4956 7 6 2.2762 3.7228 -1.6376 8 1 2.6479 4.7408 -1.7848 9 8 1.4912 3.3483 -2.7730 10 6 1.9089 3.9592 -3.9954 11 6 1.0033 3.4897 -5.1357 12 6 1.4433 4.1345 -6.4248 13 1 2.2851 4.8112 -6.4302 14 6 0.7720 3.8597 -7.5973 15 7 -0.2527 3.0354 -7.5907 16 14 1.3170 4.6595 -9.1950 17 1 2.7214 4.2750 -9.4871 18 1 0.4381 4.2037 -10.3018 19 1 1.2246 6.1360 -9.0662 20 6 1.4095 3.6806 -0.3802 21 6 2.0843 4.4957 0.7303 22 6 0.0698 4.3732 -0.7107 23 8 1.1352 2.3687 0.0514 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 3.5834 2.2278 1.2394 28 1 2.3615 1.2958 2.1375 29 1 3.6266 0.4485 1.2157 30 1 2.3376 1.0386 -2.1193 31 1 3.7745 0.6676 -1.1441 32 1 4.0479 2.7844 -2.4202 33 1 4.1016 3.0779 -0.6724 34 1 1.8418 5.0431 -3.9014 35 1 2.9395 3.6762 -4.2095 36 1 1.0699 2.4059 -5.2299 37 1 -0.0272 3.7731 -4.9215 38 1 -0.7247 2.8418 -8.4157 39 1 1.4388 4.5177 1.6083 40 1 2.2565 5.5136 0.3803 41 1 3.0372 4.0351 0.9912 42 1 0.2608 5.3922 -1.0471 43 1 -0.4404 3.8200 -1.4992 44 1 -0.5568 4.3964 0.1808 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205649443.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:28 Heat of formation + Delta-G solvation = -105.515382 kcal Electronic energy + Delta-G solvation = -22019.026294 eV Core-core repulsion = 18935.861556 eV Total energy + Delta-G solvation = -3083.164738 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.41889 -38.59920 -36.29616 -35.38307 -34.09731 -32.79006 -31.81548 -30.34990 -28.15279 -27.14990 -26.32589 -24.32157 -23.25624 -22.58555 -21.10771 -19.47734 -18.50782 -17.35475 -17.01984 -16.89478 -16.55375 -16.50004 -16.18928 -15.32684 -14.81637 -14.74402 -14.36692 -14.25945 -13.88873 -13.62419 -13.42358 -13.31593 -13.07194 -12.97330 -12.94931 -12.88779 -12.61410 -12.58364 -12.43254 -12.27766 -11.92028 -11.75573 -11.47922 -11.43097 -11.36427 -10.91376 -10.62561 -10.54194 -10.28050 -9.93403 -8.24218 -6.38004 1.39600 1.43807 1.47614 1.51877 2.35427 2.45644 2.90705 3.09391 3.64259 3.76812 3.82464 3.92142 4.10194 4.15595 4.26673 4.31301 4.42635 4.43294 4.48459 4.58411 4.64610 4.70938 4.77576 4.84106 4.89945 4.92352 4.95491 4.96218 4.99489 5.05075 5.20027 5.28255 5.33180 5.37467 5.44420 5.47376 5.57128 5.72783 5.75583 5.93484 6.10971 6.47504 6.77984 6.95944 7.32040 8.88610 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.025943 B = 0.004496 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.023665 B = 6226.659379 C = 6493.147275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.166 4.166 3 C 0.159 3.841 4 C -0.159 4.159 5 C -0.133 4.133 6 C -0.140 4.140 7 C 0.053 3.947 8 H 0.073 0.927 9 O -0.392 6.392 10 C 0.087 3.913 11 C 0.033 3.967 12 C -0.547 4.547 13 H 0.067 0.933 14 C 0.001 3.999 15 N -0.933 5.933 16 Si 0.974 3.026 17 H -0.264 1.264 18 H -0.282 1.282 19 H -0.263 1.263 20 C 0.137 3.863 21 C -0.163 4.163 22 C -0.136 4.136 23 O -0.385 6.385 24 H 0.108 0.892 25 H 0.089 0.911 26 H 0.137 0.863 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.042 0.958 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.099 0.901 34 H 0.043 0.957 35 H 0.040 0.960 36 H -0.012 1.012 37 H -0.009 1.009 38 H 0.266 0.734 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.038 0.962 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.104 -0.641 19.265 20.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.184 4.184 3 C 0.120 3.880 4 C -0.216 4.216 5 C -0.171 4.171 6 C -0.178 4.178 7 C -0.005 4.005 8 H 0.091 0.909 9 O -0.311 6.311 10 C 0.011 3.989 11 C -0.004 4.004 12 C -0.584 4.584 13 H 0.085 0.915 14 C -0.197 4.197 15 N -0.572 5.572 16 Si 0.797 3.203 17 H -0.189 1.189 18 H -0.207 1.207 19 H -0.188 1.188 20 C 0.098 3.902 21 C -0.221 4.221 22 C -0.194 4.194 23 O -0.305 6.305 24 H 0.126 0.874 25 H 0.108 0.892 26 H 0.154 0.846 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.110 0.890 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.006 0.994 37 H 0.009 0.991 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.058 0.942 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.659 -0.878 19.231 20.718 hybrid contribution 0.167 0.256 -1.403 1.436 sum 7.826 -0.622 17.828 19.480 Atomic orbital electron populations 1.23863 0.96779 1.01882 0.99343 1.23485 0.96447 0.96992 1.01477 1.20209 0.88370 0.84903 0.94515 1.22414 0.99236 1.03205 0.96777 1.21914 0.99982 0.97572 0.97600 1.21932 0.97171 0.95533 1.03146 1.22885 0.92136 0.98395 0.87112 0.90896 1.88024 1.56507 1.70462 1.16136 1.22445 0.97341 0.95480 0.83599 1.18866 0.94265 0.95157 0.92116 1.21440 1.15783 1.27919 0.93288 0.91475 1.26046 0.94711 0.95549 1.03408 1.70130 1.21587 1.36505 1.28967 0.85375 0.78482 0.79018 0.77408 1.18870 1.20749 1.18808 1.21367 0.95486 0.82153 0.91176 1.22472 1.01319 1.00102 0.98174 1.22041 0.96237 0.99638 1.01452 1.86128 1.43059 1.17284 1.84077 0.87421 0.89231 0.84551 0.91543 0.91961 0.90070 0.93944 0.89040 0.92045 0.88224 0.93853 0.94208 0.99354 0.99083 0.92571 0.90767 0.90386 0.91194 0.90848 0.94227 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.86 14.06 67.78 0.95 -3.90 16 2 C -0.17 -4.12 8.53 26.10 0.22 -3.90 16 3 C 0.16 3.97 1.06 -11.05 -0.01 3.96 16 4 C -0.16 -2.88 8.37 72.10 0.60 -2.28 16 5 C -0.13 -3.58 4.60 30.46 0.14 -3.44 16 6 C -0.14 -3.65 5.42 30.48 0.17 -3.49 16 7 C 0.05 1.60 1.91 30.46 0.06 1.66 16 8 H 0.07 2.02 7.60 -2.19 -0.02 2.01 16 9 O -0.39 -16.13 8.06 -148.98 -1.20 -17.33 16 10 C 0.09 3.90 5.67 71.98 0.41 4.31 16 11 C 0.03 1.88 5.34 29.85 0.16 2.04 16 12 C -0.55 -31.80 9.11 25.60 0.23 -31.57 16 13 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 14 C 0.00 0.07 5.46 84.66 0.46 0.53 16 15 N -0.93 -58.30 13.29 21.45 0.28 -58.02 16 16 Si 0.97 44.36 29.54 68.60 2.03 46.38 16 17 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 19 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 20 C 0.14 3.72 0.96 -10.27 -0.01 3.71 16 21 C -0.16 -3.15 8.42 72.11 0.61 -2.54 16 22 C -0.14 -3.98 8.27 72.45 0.60 -3.38 16 23 O -0.39 -11.17 7.17 -144.20 -1.03 -12.21 16 24 H 0.11 2.42 8.06 -2.91 -0.02 2.40 16 25 H 0.09 2.76 6.83 -2.91 -0.02 2.74 16 26 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 27 H 0.07 1.08 5.42 -2.39 -0.01 1.07 16 28 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.08 1.19 8.13 -2.39 -0.02 1.17 16 30 H 0.04 1.48 7.64 -2.30 -0.02 1.46 16 31 H 0.09 1.98 8.04 -2.23 -0.02 1.96 16 32 H 0.06 1.70 7.75 -2.14 -0.02 1.69 16 33 H 0.10 1.96 6.54 -2.54 -0.02 1.95 16 34 H 0.04 1.82 8.07 -2.39 -0.02 1.81 16 35 H 0.04 1.69 7.71 -2.39 -0.02 1.67 16 36 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 37 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 38 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.08 1.31 8.07 -2.39 -0.02 1.29 16 41 H 0.07 1.17 5.51 -2.38 -0.01 1.16 16 42 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 43 H 0.04 1.43 7.37 -2.39 -0.02 1.42 16 44 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -68.78 342.26 5.61 -63.17 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.94 Total: 16.28 kcal Atomic # 6 Polarization: -42.87 SS G_CDS: 4.59 Total: -38.28 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: 0.28 Total: -58.02 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -2.23 Total: -29.53 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -68.78 5.61 -63.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205649443.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.344 kcal (2) G-P(sol) polarization free energy of solvation -68.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds