Wall clock time and date at job start Mon Mar 30 2020 01:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99986 * 2 1 4 4 H 1.48500 * 109.46803 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47153 * 120.00239 * 3 2 1 6 6 H 1.48499 * 109.47196 * 240.00657 * 3 2 1 7 7 C 1.37874 * 119.99710 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99504 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00260 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46773 * 180.02562 * 9 7 2 11 11 C 1.47476 * 110.99875 * 265.96915 * 10 9 7 12 12 C 1.53513 * 87.93376 * 221.30071 * 11 10 9 13 13 O 1.42896 * 114.17338 * 139.67447 * 12 11 10 14 14 C 1.42902 * 114.00443 * 116.15883 * 13 12 11 15 15 C 1.53003 * 109.47206 * 180.02562 * 14 13 12 16 16 N 1.46900 * 109.47015 * 65.01873 * 15 14 13 17 17 C 1.46848 * 110.99657 * 200.01134 * 16 15 14 18 18 C 1.53039 * 109.51934 * 174.16365 * 17 16 15 19 19 C 1.53113 * 109.28115 * 59.18200 * 18 17 16 20 20 C 1.53120 * 109.15829 * 302.34692 * 19 18 17 21 21 C 1.46848 * 110.99915 * 75.80735 * 16 15 14 22 22 C 1.47483 * 110.99779 * 169.99769 * 10 9 7 23 23 H 0.96996 * 120.00006 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47057 * 299.99961 * 9 7 2 25 25 H 1.08997 * 109.47142 * 60.00337 * 9 7 2 26 26 H 1.09001 * 113.48110 * 336.06428 * 11 10 9 27 27 H 1.09001 * 113.47733 * 106.53418 * 11 10 9 28 28 H 1.08999 * 114.16968 * 272.37660 * 12 11 10 29 29 H 1.08996 * 109.46580 * 299.99997 * 14 13 12 30 30 H 1.09002 * 109.46955 * 59.99871 * 14 13 12 31 31 H 1.09001 * 109.46900 * 185.02094 * 15 14 13 32 32 H 1.08998 * 109.46613 * 305.01997 * 15 14 13 33 33 H 1.08997 * 109.46478 * 294.18149 * 17 16 15 34 34 H 1.09000 * 109.45963 * 54.15309 * 17 16 15 35 35 H 1.09003 * 109.50522 * 299.24042 * 18 17 16 36 36 H 1.09000 * 109.49781 * 179.12333 * 18 17 16 37 37 H 1.08997 * 109.52525 * 182.43789 * 19 18 17 38 38 H 1.09009 * 109.52138 * 62.24835 * 19 18 17 39 39 H 1.08998 * 109.50175 * 297.70593 * 20 19 18 40 40 H 1.09003 * 109.50008 * 177.59459 * 20 19 18 41 41 H 1.08998 * 109.46178 * 305.85417 * 21 16 15 42 42 H 1.08999 * 109.46180 * 65.81826 * 21 16 15 43 43 H 1.09002 * 113.47727 * 253.46539 * 22 10 9 44 44 H 1.08999 * 113.47760 * 23.93830 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1028 1.6965 -1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 2.4756 -4.0802 -1.3739 12 6 2.4191 -5.5181 -0.8392 13 8 1.7493 -6.4380 -1.7036 14 6 2.5903 -7.4750 -2.2128 15 6 1.7723 -8.3951 -3.1213 16 7 1.3234 -7.6447 -4.3017 17 6 0.1799 -8.3067 -4.9425 18 6 -0.3510 -7.4264 -6.0762 19 6 0.7645 -7.1907 -7.0981 20 6 1.9617 -6.5448 -6.3952 21 6 2.4256 -7.4505 -5.2523 22 6 1.5186 -4.8985 0.2386 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6241 -2.5567 -0.8903 26 1 1.6757 -3.8466 -2.0765 27 1 3.4598 -3.7929 -1.7440 28 1 3.3715 -5.8924 -0.4639 29 1 3.4066 -7.0331 -2.7840 30 1 2.9982 -8.0522 -1.3830 31 1 2.3900 -9.2355 -3.4382 32 1 0.9051 -8.7670 -2.5757 33 1 0.4967 -9.2680 -5.3470 34 1 -0.6078 -8.4646 -4.2059 35 1 -0.6808 -6.4700 -5.6704 36 1 -1.1899 -7.9252 -6.5617 37 1 0.4036 -6.5288 -7.8853 38 1 1.0677 -8.1434 -7.5326 39 1 1.6683 -5.5745 -5.9945 40 1 2.7752 -6.4135 -7.1087 41 1 3.2690 -6.9867 -4.7408 42 1 2.7319 -8.4159 -5.6554 43 1 1.6917 -5.3047 1.2352 44 1 0.4632 -4.8832 -0.0336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206709405.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:01 Heat of formation + Delta-G solvation = -34.756792 kcal Electronic energy + Delta-G solvation = -20871.182127 eV Core-core repulsion = 17823.378464 eV Total energy + Delta-G solvation = -3047.803664 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.02196 -39.93183 -37.78309 -35.08306 -34.53459 -31.76928 -31.20131 -29.66443 -27.06472 -26.70710 -25.13500 -23.97118 -23.44200 -22.35646 -20.88195 -20.58874 -18.65515 -17.94924 -17.33932 -16.93010 -16.32784 -16.19401 -15.86397 -15.43003 -15.24168 -15.07935 -14.91064 -14.43036 -14.11532 -14.00374 -13.81821 -13.63677 -13.22550 -13.09145 -12.86002 -12.79523 -12.47395 -12.29106 -12.12679 -11.98575 -11.95235 -11.62920 -11.57989 -11.26815 -11.20089 -11.15296 -10.62645 -10.27557 -9.74451 -9.13383 -8.23604 -6.35166 1.39290 1.43799 1.51949 2.38672 2.69729 2.97042 3.08209 3.43692 3.53804 3.89885 3.90180 3.99636 4.02573 4.18241 4.31374 4.34804 4.37964 4.47891 4.53559 4.54672 4.62087 4.67855 4.68036 4.70058 4.73930 4.83482 4.88286 4.90458 4.94674 4.98825 5.05448 5.08852 5.09566 5.23303 5.31718 5.48484 5.54858 5.73977 6.05205 6.18767 6.24659 6.40220 6.47529 6.78520 7.34434 8.87903 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021085 B = 0.003764 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.615514 B = 7436.544985 C = 8118.517410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.975 3.025 4 H -0.280 1.280 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.530 4.530 8 H 0.061 0.939 9 C 0.178 3.822 10 N -0.479 5.479 11 C -0.008 4.008 12 C 0.085 3.915 13 O -0.376 6.376 14 C 0.060 3.940 15 C 0.059 3.941 16 N -0.555 5.555 17 C 0.059 3.941 18 C -0.119 4.119 19 C -0.117 4.117 20 C -0.120 4.120 21 C 0.057 3.943 22 C -0.007 4.007 23 H 0.266 0.734 24 H 0.001 0.999 25 H -0.026 1.026 26 H 0.045 0.955 27 H 0.081 0.919 28 H 0.121 0.879 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.043 0.957 34 H 0.069 0.931 35 H 0.048 0.952 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.047 0.953 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.043 0.957 43 H 0.098 0.902 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.827 -20.688 -11.985 24.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.205 1.205 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.568 4.568 8 H 0.079 0.921 9 C 0.051 3.949 10 N -0.203 5.203 11 C -0.137 4.137 12 C 0.026 3.974 13 O -0.294 6.294 14 C -0.016 4.016 15 C -0.068 4.068 16 N -0.281 5.281 17 C -0.068 4.068 18 C -0.157 4.157 19 C -0.154 4.154 20 C -0.158 4.158 21 C -0.071 4.071 22 C -0.137 4.137 23 H 0.075 0.925 24 H 0.019 0.981 25 H -0.008 1.008 26 H 0.064 0.936 27 H 0.099 0.901 28 H 0.139 0.861 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.061 0.939 43 H 0.116 0.884 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.844 -19.862 -11.434 23.424 hybrid contribution -0.388 0.317 -0.559 0.751 sum 4.456 -19.545 -11.993 23.360 Atomic orbital electron populations 1.70090 1.07848 1.28164 1.51452 1.26004 0.95837 1.03479 0.94478 0.85351 0.78128 0.77397 0.79226 1.20476 1.19063 1.19196 1.21398 0.93643 0.91108 1.50654 0.92079 1.19895 0.90594 0.90547 0.93913 1.68830 1.32786 1.01865 1.16786 1.24216 1.01422 0.95868 0.92237 1.23620 0.96354 0.87386 0.90006 1.88040 1.36894 1.40398 1.64092 1.22791 0.93123 0.88996 0.96732 1.22141 0.99921 0.93888 0.90874 1.61775 1.08055 1.50568 1.07691 1.22074 0.93005 0.95287 0.96446 1.21599 0.98381 0.99904 0.95814 1.21553 0.95261 1.01058 0.97559 1.21591 0.98622 0.98668 0.96881 1.22120 0.93210 0.98724 0.93036 1.24090 0.97544 0.91614 1.00403 0.92521 0.98072 1.00795 0.93630 0.90064 0.86123 0.93171 0.90921 0.91033 0.90305 0.93932 0.91261 0.93299 0.90165 0.91511 0.91127 0.93402 0.90322 0.91252 0.93857 0.88366 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.57 13.29 21.45 0.28 -58.28 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.98 45.79 29.54 68.60 2.03 47.82 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 5 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.53 -32.02 9.39 25.60 0.24 -31.78 16 8 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 9 C 0.18 10.21 4.57 85.56 0.39 10.60 16 10 N -0.48 -22.46 6.32 -932.91 -5.89 -28.36 16 11 C -0.01 -0.32 7.55 83.58 0.63 0.31 16 12 C 0.09 2.75 4.65 30.94 0.14 2.90 16 13 O -0.38 -11.63 10.34 -148.98 -1.54 -13.17 16 14 C 0.06 1.30 5.98 71.98 0.43 1.73 16 15 C 0.06 1.12 5.39 86.30 0.47 1.59 16 16 N -0.56 -12.27 4.53 -896.38 -4.06 -16.33 16 17 C 0.06 1.13 5.43 86.33 0.47 1.59 16 18 C -0.12 -2.23 6.09 30.65 0.19 -2.04 16 19 C -0.12 -1.95 6.00 30.67 0.18 -1.77 16 20 C -0.12 -2.31 6.09 30.64 0.19 -2.12 16 21 C 0.06 1.08 5.29 86.32 0.46 1.54 16 22 C -0.01 -0.28 7.52 83.58 0.63 0.35 16 23 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 24 H 0.00 0.07 8.08 -2.39 -0.02 0.05 16 25 H -0.03 -1.60 7.30 -2.39 -0.02 -1.62 16 26 H 0.05 2.10 7.42 -2.39 -0.02 2.08 16 27 H 0.08 3.12 8.14 -2.39 -0.02 3.11 16 28 H 0.12 3.19 7.88 -2.39 -0.02 3.18 16 29 H 0.05 1.06 6.70 -2.39 -0.02 1.04 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.00 8.00 -2.39 -0.02 0.98 16 32 H 0.08 1.52 7.79 -2.39 -0.02 1.50 16 33 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.07 1.36 7.93 -2.39 -0.02 1.34 16 35 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.07 1.38 6.65 -2.39 -0.02 1.36 16 42 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 44 H 0.05 2.15 7.91 -2.39 -0.02 2.13 16 Total: -1.00 -70.08 346.09 -3.38 -73.46 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.93 Total: 11.51 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: 4.88 Total: -16.65 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -9.67 Total: -102.97 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -1.54 Total: -13.17 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -70.08 -3.38 -73.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206709405.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.701 kcal (2) G-P(sol) polarization free energy of solvation -70.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds