Wall clock time and date at job start Mon Mar 30 2020 01:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00339 * 2 1 4 4 H 1.48497 * 109.47253 * 270.00489 * 3 2 1 5 5 H 1.48496 * 109.47071 * 149.99953 * 3 2 1 6 6 H 1.48504 * 109.46574 * 30.00238 * 3 2 1 7 7 C 1.38822 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99743 * 209.93028 * 7 2 1 9 9 N 1.36936 * 119.99816 * 29.92198 * 7 2 1 10 10 C 1.47423 * 125.64643 * 10.52579 * 9 7 2 11 11 C 1.55138 * 104.72145 * 155.81357 * 10 9 7 12 12 C 1.55156 * 101.48292 * 37.29571 * 11 10 9 13 13 H 1.09001 * 110.72458 * 82.69277 * 12 11 10 14 14 O 1.42896 * 110.87238 * 205.89722 * 12 11 10 15 15 C 1.42902 * 114.00419 * 205.05988 * 14 12 11 16 16 C 1.52996 * 109.47286 * 179.97438 * 15 14 12 17 17 N 1.46905 * 109.46866 * 63.69798 * 16 15 14 18 18 C 1.46848 * 110.99794 * 199.71612 * 17 16 15 19 19 C 1.53036 * 109.52541 * 174.15805 * 18 17 16 20 20 C 1.53126 * 109.27676 * 59.17913 * 19 18 17 21 21 C 1.53121 * 109.15816 * 302.34894 * 20 19 18 22 22 C 1.46848 * 110.99960 * 75.51012 * 17 16 15 23 23 C 1.47021 * 125.64787 * 190.82741 * 9 7 2 24 24 H 0.97009 * 119.99832 * 185.75524 * 1 2 3 25 25 H 1.09002 * 110.36863 * 274.74214 * 10 9 7 26 26 H 1.09002 * 110.36861 * 37.06833 * 10 9 7 27 27 H 1.08999 * 111.19151 * 279.19298 * 11 10 9 28 28 H 1.09004 * 110.93836 * 155.28505 * 11 10 9 29 29 H 1.08992 * 109.47198 * 300.00317 * 15 14 12 30 30 H 1.09004 * 109.46664 * 60.00396 * 15 14 12 31 31 H 1.09002 * 109.47094 * 183.69564 * 16 15 14 32 32 H 1.08999 * 109.47630 * 303.69850 * 16 15 14 33 33 H 1.08999 * 109.46238 * 294.17935 * 18 17 16 34 34 H 1.09003 * 109.46197 * 54.14450 * 18 17 16 35 35 H 1.08999 * 109.50098 * 299.24167 * 19 18 17 36 36 H 1.08995 * 109.54161 * 179.14120 * 19 18 17 37 37 H 1.08997 * 109.52204 * 182.44282 * 20 19 18 38 38 H 1.09002 * 109.57330 * 62.28452 * 20 19 18 39 39 H 1.08998 * 109.50257 * 297.71015 * 21 20 19 40 40 H 1.09007 * 109.53271 * 177.61533 * 21 20 19 41 41 H 1.09001 * 109.46123 * 305.84971 * 22 17 16 42 42 H 1.08996 * 109.46398 * 65.82351 * 22 17 16 43 43 H 1.08997 * 109.88421 * 300.44313 * 23 9 7 44 44 H 1.09008 * 109.87954 * 61.45699 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 3.5477 1.4400 0.7000 6 1 1.4476 2.6526 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 2.9822 -1.2647 0.4661 9 7 1.4625 -2.3088 -0.5926 10 6 0.2612 -2.3201 -1.4472 11 6 0.4179 -3.5857 -2.3307 12 6 1.0539 -4.5851 -1.3288 13 1 0.2873 -5.0508 -0.7094 14 8 1.8181 -5.5780 -2.0159 15 6 1.9578 -6.8048 -1.2966 16 6 2.7888 -7.7886 -2.1227 17 7 4.1457 -7.2545 -2.3006 18 6 4.8194 -7.8968 -3.4364 19 6 6.1684 -7.2173 -3.6819 20 6 7.0299 -7.3336 -2.4212 21 6 6.2846 -6.7001 -1.2431 22 6 4.9322 -7.3947 -1.0684 23 6 1.9712 -3.6833 -0.4762 24 1 -0.4850 -0.8359 0.0842 25 1 -0.6386 -2.3903 -0.8360 26 1 0.2296 -1.4254 -2.0690 27 1 1.0847 -3.3985 -3.1724 28 1 -0.5526 -3.9425 -2.6756 29 1 2.4577 -6.6144 -0.3470 30 1 0.9719 -7.2304 -1.1093 31 1 2.8403 -8.7459 -1.6039 32 1 2.3227 -7.9285 -3.0980 33 1 4.9792 -8.9520 -3.2144 34 1 4.1982 -7.8033 -4.3272 35 1 6.0083 -6.1652 -3.9174 36 1 6.6754 -7.7037 -4.5152 37 1 7.9749 -6.8133 -2.5766 38 1 7.2236 -8.3846 -2.2070 39 1 6.1264 -5.6398 -1.4404 40 1 6.8740 -6.8171 -0.3337 41 1 4.3930 -6.9364 -0.2393 42 1 5.0915 -8.4522 -0.8576 43 1 2.9932 -3.7333 -0.8518 44 1 1.9434 -4.0018 0.5659 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206709489.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:05 Heat of formation + Delta-G solvation = -26.170108 kcal Electronic energy + Delta-G solvation = -21366.875823 eV Core-core repulsion = 18319.444506 eV Total energy + Delta-G solvation = -3047.431317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.22782 -38.21751 -36.07692 -33.80951 -32.20754 -30.94462 -29.35361 -28.69860 -26.89846 -24.41625 -23.98253 -23.14384 -21.45905 -20.29259 -20.07406 -19.76121 -17.49429 -16.63055 -16.42326 -15.23401 -14.93882 -14.63429 -14.34625 -14.24522 -13.98048 -13.68430 -13.43383 -13.09559 -13.00684 -12.86397 -12.43003 -12.11775 -11.95743 -11.59106 -11.28864 -11.13710 -10.96865 -10.82105 -10.67944 -10.55381 -10.46528 -10.36400 -10.30114 -9.98504 -9.87638 -9.51511 -9.03494 -8.32981 -8.28907 -6.88591 -6.05108 -3.01830 3.56991 3.60020 3.75751 3.76468 3.97976 4.67197 4.68840 4.73016 4.80917 5.03946 5.15371 5.16902 5.26610 5.30968 5.36071 5.38761 5.44570 5.47329 5.48246 5.54204 5.60514 5.67386 5.72334 5.79855 5.82125 5.86111 5.93040 6.07202 6.09067 6.17857 6.30878 6.36946 6.47796 6.64188 6.77170 7.03704 7.04924 7.07789 7.11764 7.73175 7.85811 8.54882 9.09125 9.89596 10.44438 11.29383 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022126 B = 0.004377 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.173169 B = 6395.755217 C = 7186.920470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.026 4.026 3 Si 1.064 2.936 4 H -0.293 1.293 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.334 4.334 8 H 0.067 0.933 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.128 4.128 12 C 0.076 3.924 13 H 0.059 0.941 14 O -0.359 6.359 15 C 0.067 3.933 16 C 0.059 3.941 17 N -0.526 5.526 18 C 0.059 3.941 19 C -0.118 4.118 20 C -0.120 4.120 21 C -0.118 4.118 22 C 0.056 3.944 23 C 0.120 3.880 24 H 0.268 0.732 25 H 0.024 0.976 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.026 0.974 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.027 0.973 43 H 0.038 0.962 44 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.266 -18.646 -5.314 21.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.227 4.227 3 Si 0.894 3.106 4 H -0.221 1.221 5 H -0.219 1.219 6 H -0.217 1.217 7 C -0.462 4.462 8 H 0.085 0.915 9 N -0.331 5.331 10 C 0.019 3.981 11 C -0.166 4.166 12 C 0.018 3.982 13 H 0.077 0.923 14 O -0.278 6.278 15 C -0.010 4.010 16 C -0.069 4.069 17 N -0.251 5.251 18 C -0.069 4.069 19 C -0.156 4.156 20 C -0.157 4.157 21 C -0.156 4.156 22 C -0.072 4.072 23 C -0.006 4.006 24 H 0.080 0.920 25 H 0.042 0.958 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.045 0.955 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.045 0.955 43 H 0.056 0.944 44 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 8.202 -16.394 -5.612 19.171 hybrid contribution 0.136 -2.656 0.700 2.750 sum 8.339 -19.050 -4.912 21.367 Atomic orbital electron populations 1.70758 1.06682 1.30138 1.48580 1.25669 0.96377 1.00795 0.99899 0.83524 0.74540 0.75959 0.76530 1.22088 1.21941 1.21729 1.19803 1.01216 0.88439 1.36717 0.91483 1.44478 1.30605 1.02057 1.55934 1.21586 0.90084 0.94869 0.91516 1.22935 0.99478 0.95847 0.98348 1.23137 0.92469 0.88429 0.94183 0.92310 1.88005 1.73703 1.22585 1.43465 1.22454 0.97506 0.86037 0.95016 1.22109 0.89247 0.94535 1.00964 1.61788 1.01548 1.57477 1.04301 1.22070 0.95648 0.95078 0.94102 1.21585 0.94591 1.02127 0.97250 1.21567 0.98465 1.00300 0.95414 1.21583 0.94822 1.01293 0.97911 1.22126 0.94625 0.97943 0.92516 1.21708 0.96858 0.86112 0.95898 0.92033 0.95812 0.92419 0.90667 0.91716 0.93567 0.93570 0.93660 0.90152 0.95542 0.90796 0.90730 0.91850 0.91918 0.92675 0.90592 0.91756 0.90633 0.95478 0.94398 0.96572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.51 12.77 55.49 0.71 -27.80 16 2 C -0.03 -0.78 5.04 -17.43 -0.09 -0.87 16 3 Si 1.06 26.23 30.01 -169.99 -5.10 21.13 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.33 -9.90 10.03 -15.06 -0.15 -10.05 16 8 H 0.07 1.99 7.98 -52.49 -0.42 1.57 16 9 N -0.60 -16.26 3.34 -169.92 -0.57 -16.82 16 10 C 0.15 3.55 5.23 -2.41 -0.01 3.54 16 11 C -0.13 -2.52 6.83 -24.46 -0.17 -2.69 16 12 C 0.08 1.45 3.39 -24.90 -0.08 1.36 16 13 H 0.06 1.04 7.88 -51.93 -0.41 0.63 16 14 O -0.36 -6.27 10.01 -35.23 -0.35 -6.63 16 15 C 0.07 0.91 5.99 37.16 0.22 1.13 16 16 C 0.06 0.68 5.39 -3.82 -0.02 0.66 16 17 N -0.53 -6.56 4.52 -234.67 -1.06 -7.62 16 18 C 0.06 0.62 5.43 -3.83 -0.02 0.60 16 19 C -0.12 -1.17 6.09 -26.65 -0.16 -1.33 16 20 C -0.12 -1.14 6.00 -26.60 -0.16 -1.30 16 21 C -0.12 -1.29 6.09 -26.65 -0.16 -1.45 16 22 C 0.06 0.64 5.29 -3.83 -0.02 0.62 16 23 C 0.12 2.75 7.01 -3.06 -0.02 2.73 16 24 H 0.27 8.30 5.99 -40.82 -0.24 8.06 16 25 H 0.02 0.61 6.94 -51.93 -0.36 0.25 16 26 H 0.06 1.54 7.64 -51.93 -0.40 1.14 16 27 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.64 6.72 -51.93 -0.35 0.29 16 30 H 0.05 0.55 8.11 -51.93 -0.42 0.13 16 31 H 0.05 0.44 8.00 -51.93 -0.42 0.02 16 32 H 0.08 0.89 7.80 -51.93 -0.40 0.49 16 33 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 0.76 7.93 -51.93 -0.41 0.35 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.92 6.65 -51.93 -0.35 0.58 16 42 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.04 0.90 8.06 -51.93 -0.42 0.48 16 44 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 LS Contribution 339.04 15.07 5.11 5.11 Total: -1.00 -32.55 339.04 -10.15 -42.70 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -8.04 Total: -3.02 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -0.85 Total: -7.05 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.92 Total: -52.25 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: -0.35 Total: -6.63 kcal Atomic # 14 Polarization: 26.23 SS G_CDS: -5.10 Total: 21.13 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.55 -10.15 -42.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206709489.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.529 kcal (2) G-P(sol) polarization free energy of solvation -32.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds