Wall clock time and date at job start Mon Mar 30 2020 01:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00339 * 2 1 4 4 H 1.48497 * 109.47253 * 270.00489 * 3 2 1 5 5 H 1.48496 * 109.47071 * 149.99953 * 3 2 1 6 6 H 1.48504 * 109.46574 * 30.00238 * 3 2 1 7 7 C 1.38822 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99743 * 209.93028 * 7 2 1 9 9 N 1.36936 * 119.99816 * 29.92198 * 7 2 1 10 10 C 1.47423 * 125.64643 * 10.52579 * 9 7 2 11 11 C 1.55138 * 104.72145 * 155.81357 * 10 9 7 12 12 C 1.55156 * 101.48292 * 37.29571 * 11 10 9 13 13 H 1.09001 * 110.72458 * 82.69277 * 12 11 10 14 14 O 1.42896 * 110.87238 * 205.89722 * 12 11 10 15 15 C 1.42902 * 114.00419 * 205.05988 * 14 12 11 16 16 C 1.52996 * 109.47286 * 179.97438 * 15 14 12 17 17 N 1.46905 * 109.46866 * 63.69798 * 16 15 14 18 18 C 1.46848 * 110.99794 * 199.71612 * 17 16 15 19 19 C 1.53036 * 109.52541 * 174.15805 * 18 17 16 20 20 C 1.53126 * 109.27676 * 59.17913 * 19 18 17 21 21 C 1.53121 * 109.15816 * 302.34894 * 20 19 18 22 22 C 1.46848 * 110.99960 * 75.51012 * 17 16 15 23 23 C 1.47021 * 125.64787 * 190.82741 * 9 7 2 24 24 H 0.97009 * 119.99832 * 185.75524 * 1 2 3 25 25 H 1.09002 * 110.36863 * 274.74214 * 10 9 7 26 26 H 1.09002 * 110.36861 * 37.06833 * 10 9 7 27 27 H 1.08999 * 111.19151 * 279.19298 * 11 10 9 28 28 H 1.09004 * 110.93836 * 155.28505 * 11 10 9 29 29 H 1.08992 * 109.47198 * 300.00317 * 15 14 12 30 30 H 1.09004 * 109.46664 * 60.00396 * 15 14 12 31 31 H 1.09002 * 109.47094 * 183.69564 * 16 15 14 32 32 H 1.08999 * 109.47630 * 303.69850 * 16 15 14 33 33 H 1.08999 * 109.46238 * 294.17935 * 18 17 16 34 34 H 1.09003 * 109.46197 * 54.14450 * 18 17 16 35 35 H 1.08999 * 109.50098 * 299.24167 * 19 18 17 36 36 H 1.08995 * 109.54161 * 179.14120 * 19 18 17 37 37 H 1.08997 * 109.52204 * 182.44282 * 20 19 18 38 38 H 1.09002 * 109.57330 * 62.28452 * 20 19 18 39 39 H 1.08998 * 109.50257 * 297.71015 * 21 20 19 40 40 H 1.09007 * 109.53271 * 177.61533 * 21 20 19 41 41 H 1.09001 * 109.46123 * 305.84971 * 22 17 16 42 42 H 1.08996 * 109.46398 * 65.82351 * 22 17 16 43 43 H 1.08997 * 109.88421 * 300.44313 * 23 9 7 44 44 H 1.09008 * 109.87954 * 61.45699 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 3.5477 1.4400 0.7000 6 1 1.4476 2.6526 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 2.9822 -1.2647 0.4661 9 7 1.4625 -2.3088 -0.5926 10 6 0.2612 -2.3201 -1.4472 11 6 0.4179 -3.5857 -2.3307 12 6 1.0539 -4.5851 -1.3288 13 1 0.2873 -5.0508 -0.7094 14 8 1.8181 -5.5780 -2.0159 15 6 1.9578 -6.8048 -1.2966 16 6 2.7888 -7.7886 -2.1227 17 7 4.1457 -7.2545 -2.3006 18 6 4.8194 -7.8968 -3.4364 19 6 6.1684 -7.2173 -3.6819 20 6 7.0299 -7.3336 -2.4212 21 6 6.2846 -6.7001 -1.2431 22 6 4.9322 -7.3947 -1.0684 23 6 1.9712 -3.6833 -0.4762 24 1 -0.4850 -0.8359 0.0842 25 1 -0.6386 -2.3903 -0.8360 26 1 0.2296 -1.4254 -2.0690 27 1 1.0847 -3.3985 -3.1724 28 1 -0.5526 -3.9425 -2.6756 29 1 2.4577 -6.6144 -0.3470 30 1 0.9719 -7.2304 -1.1093 31 1 2.8403 -8.7459 -1.6039 32 1 2.3227 -7.9285 -3.0980 33 1 4.9792 -8.9520 -3.2144 34 1 4.1982 -7.8033 -4.3272 35 1 6.0083 -6.1652 -3.9174 36 1 6.6754 -7.7037 -4.5152 37 1 7.9749 -6.8133 -2.5766 38 1 7.2236 -8.3846 -2.2070 39 1 6.1264 -5.6398 -1.4404 40 1 6.8740 -6.8171 -0.3337 41 1 4.3930 -6.9364 -0.2393 42 1 5.0915 -8.4522 -0.8576 43 1 2.9932 -3.7333 -0.8518 44 1 1.9434 -4.0018 0.5659 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206709489.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:04 Heat of formation + Delta-G solvation = -47.111586 kcal Electronic energy + Delta-G solvation = -21367.783913 eV Core-core repulsion = 18319.444506 eV Total energy + Delta-G solvation = -3048.339408 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.28435 -39.64197 -37.67836 -34.92526 -34.09878 -31.78204 -31.13816 -29.98671 -28.63807 -26.26074 -25.14109 -23.97832 -22.52468 -21.96307 -21.91695 -20.60594 -19.65326 -18.03155 -17.35716 -16.68923 -16.19070 -15.97526 -15.56122 -15.40414 -15.26625 -15.22700 -15.05514 -14.57150 -14.23582 -13.99830 -13.84122 -13.49505 -13.04750 -12.99453 -12.63953 -12.53272 -12.47193 -12.25197 -12.16030 -12.08531 -11.88604 -11.64198 -11.62295 -11.54507 -11.28125 -11.17035 -10.59991 -10.39545 -9.15430 -9.08057 -8.38995 -5.32355 1.56551 1.64617 1.82923 2.56522 2.70983 2.94990 3.13624 3.55207 3.72249 3.88087 3.90252 3.91200 3.98910 4.06665 4.18174 4.28073 4.33724 4.39283 4.43559 4.48361 4.50041 4.62284 4.66146 4.69564 4.80570 4.83559 4.87925 4.91622 4.94896 4.97270 5.04981 5.05975 5.08098 5.21966 5.26124 5.30413 5.47455 5.60726 6.15125 6.23772 6.27629 6.41500 6.85917 7.67533 8.24461 8.95680 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022126 B = 0.004377 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.173169 B = 6395.755217 C = 7186.920470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.074 4.074 3 Si 1.117 2.883 4 H -0.284 1.284 5 H -0.274 1.274 6 H -0.289 1.289 7 C -0.353 4.353 8 H 0.058 0.942 9 N -0.626 5.626 10 C 0.147 3.853 11 C -0.113 4.113 12 C 0.094 3.906 13 H 0.080 0.920 14 O -0.370 6.370 15 C 0.059 3.941 16 C 0.063 3.937 17 N -0.554 5.554 18 C 0.059 3.941 19 C -0.118 4.118 20 C -0.116 4.116 21 C -0.119 4.119 22 C 0.057 3.943 23 C 0.119 3.881 24 H 0.257 0.743 25 H 0.014 0.986 26 H 0.026 0.974 27 H 0.069 0.931 28 H 0.101 0.899 29 H 0.039 0.961 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.045 0.955 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.044 0.956 43 H 0.022 0.978 44 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.846 -20.485 -5.942 23.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.270 4.270 3 Si 0.941 3.059 4 H -0.211 1.211 5 H -0.199 1.199 6 H -0.215 1.215 7 C -0.481 4.481 8 H 0.076 0.924 9 N -0.354 5.354 10 C 0.022 3.978 11 C -0.151 4.151 12 C 0.036 3.964 13 H 0.098 0.902 14 O -0.288 6.288 15 C -0.018 4.018 16 C -0.065 4.065 17 N -0.279 5.279 18 C -0.068 4.068 19 C -0.155 4.155 20 C -0.153 4.153 21 C -0.157 4.157 22 C -0.071 4.071 23 C -0.006 4.006 24 H 0.067 0.933 25 H 0.032 0.968 26 H 0.045 0.955 27 H 0.088 0.912 28 H 0.119 0.881 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.040 0.960 44 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 8.793 -18.277 -6.247 21.223 hybrid contribution -0.013 -2.154 0.921 2.343 sum 8.781 -20.431 -5.327 22.867 Atomic orbital electron populations 1.70871 1.07523 1.29528 1.50608 1.27119 0.96506 1.04152 0.99239 0.82833 0.74056 0.71898 0.77084 1.21085 1.19867 1.21526 1.20042 1.01038 0.90025 1.36997 0.92432 1.44758 1.31357 1.03141 1.56176 1.21520 0.88903 0.96049 0.91320 1.22804 1.01419 0.93614 0.97250 1.22855 0.91877 0.88342 0.93369 0.90192 1.87995 1.73443 1.23607 1.43773 1.22762 0.99211 0.84881 0.94908 1.22112 0.88484 0.94677 1.01181 1.61762 1.02323 1.58751 1.05110 1.22095 0.95559 0.95756 0.93393 1.21592 0.94894 1.00844 0.98213 1.21549 0.98296 1.01080 0.94406 1.21582 0.95314 0.99576 0.99256 1.22092 0.94387 0.98723 0.91867 1.21812 0.96968 0.85293 0.96558 0.93270 0.96808 0.95546 0.91220 0.88072 0.94281 0.91256 0.91193 0.89655 0.93978 0.90821 0.93120 0.89863 0.91370 0.91121 0.93574 0.90630 0.92141 0.93784 0.95953 0.96881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.58 12.77 21.65 0.28 -59.31 16 2 C -0.07 -4.45 5.04 84.87 0.43 -4.02 16 3 Si 1.12 53.31 30.01 68.60 2.06 55.37 16 4 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 7 C -0.35 -21.39 10.03 84.04 0.84 -20.55 16 8 H 0.06 3.50 7.98 -2.91 -0.02 3.48 16 9 N -0.63 -34.55 3.34 -691.52 -2.31 -36.86 16 10 C 0.15 7.34 5.23 86.94 0.45 7.80 16 11 C -0.11 -4.32 6.83 32.07 0.22 -4.10 16 12 C 0.09 3.46 3.39 31.78 0.11 3.57 16 13 H 0.08 2.63 7.88 -2.39 -0.02 2.61 16 14 O -0.37 -12.32 10.01 -148.98 -1.49 -13.81 16 15 C 0.06 1.48 5.99 71.98 0.43 1.91 16 16 C 0.06 1.29 5.39 86.30 0.47 1.76 16 17 N -0.55 -12.99 4.52 -896.35 -4.05 -17.04 16 18 C 0.06 1.13 5.43 86.33 0.47 1.60 16 19 C -0.12 -2.17 6.09 30.65 0.19 -1.98 16 20 C -0.12 -2.01 6.00 30.68 0.18 -1.82 16 21 C -0.12 -2.54 6.09 30.65 0.19 -2.35 16 22 C 0.06 1.24 5.29 86.33 0.46 1.69 16 23 C 0.12 5.52 7.01 86.73 0.61 6.12 16 24 H 0.26 16.37 5.99 -92.70 -0.55 15.82 16 25 H 0.01 0.73 6.94 -2.39 -0.02 0.71 16 26 H 0.03 1.45 7.64 -2.39 -0.02 1.43 16 27 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 28 H 0.10 3.16 8.14 -2.39 -0.02 3.15 16 29 H 0.04 1.03 6.72 -2.39 -0.02 1.02 16 30 H 0.07 1.43 8.11 -2.38 -0.02 1.41 16 31 H 0.07 1.11 8.00 -2.39 -0.02 1.09 16 32 H 0.09 1.67 7.80 -2.39 -0.02 1.65 16 33 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.07 1.38 7.93 -2.39 -0.02 1.36 16 35 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 41 H 0.06 1.46 6.65 -2.39 -0.02 1.45 16 42 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.02 1.09 8.06 -2.39 -0.02 1.08 16 44 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 Total: -1.00 -71.36 339.04 0.67 -70.68 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 1.15 Total: 11.35 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 5.04 Total: -10.39 kcal Atomic # 7 Polarization: -107.12 SS G_CDS: -6.08 Total: -113.20 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -1.49 Total: -13.81 kcal Atomic # 14 Polarization: 53.31 SS G_CDS: 2.06 Total: 55.37 kcal Total: -71.36 0.67 -70.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206709489.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.570 kcal (2) G-P(sol) polarization free energy of solvation -71.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds