Wall clock time and date at job start Mon Mar 30 2020 01:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99732 * 2 1 4 4 H 1.48500 * 109.46866 * 269.99815 * 3 2 1 5 5 H 1.48500 * 109.47526 * 29.99403 * 3 2 1 6 6 H 1.48501 * 109.47029 * 149.99557 * 3 2 1 7 7 C 1.37873 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00216 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99955 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47271 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47184 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.47417 * 179.97438 * 11 10 9 13 13 C 1.34768 * 120.00426 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00179 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.00084 * 179.97438 * 13 12 11 16 16 H 1.09002 * 109.47152 * 40.00061 * 15 13 12 17 17 N 1.46899 * 109.47107 * 159.99973 * 15 13 12 18 18 C 1.53002 * 109.46966 * 280.00201 * 15 13 12 19 19 C 1.52996 * 109.46972 * 299.99823 * 18 15 13 20 20 C 1.53002 * 109.46969 * 180.02562 * 19 18 15 21 21 C 1.53002 * 109.47454 * 59.99949 * 20 19 18 22 22 C 1.52996 * 109.46891 * 300.00332 * 21 20 19 23 23 C 1.53002 * 109.47346 * 59.99997 * 22 21 20 24 24 H 0.97004 * 120.00213 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47041 * 59.99868 * 9 7 2 26 26 H 1.09000 * 109.47325 * 299.99951 * 9 7 2 27 27 H 1.08996 * 109.47346 * 59.99633 * 10 9 7 28 28 H 1.09000 * 109.47065 * 300.00305 * 10 9 7 29 29 H 1.08998 * 109.47191 * 60.00024 * 11 10 9 30 30 H 1.09000 * 109.47261 * 300.00053 * 11 10 9 31 31 H 0.97000 * 119.99295 * 359.97438 * 12 11 10 32 32 H 1.00893 * 111.00096 * 296.05175 * 17 15 13 33 33 H 1.00903 * 110.99833 * 59.99796 * 17 15 13 34 34 H 1.08996 * 109.47407 * 60.00310 * 18 15 13 35 35 H 1.09004 * 109.47298 * 300.00176 * 19 18 15 36 36 H 1.09004 * 109.47552 * 60.00305 * 19 18 15 37 37 H 1.09004 * 109.46930 * 300.00004 * 20 19 18 38 38 H 1.09002 * 109.47067 * 180.02562 * 20 19 18 39 39 H 1.08992 * 109.47056 * 179.97438 * 21 20 19 40 40 H 1.09004 * 109.47006 * 60.00102 * 21 20 19 41 41 H 1.08996 * 109.47261 * 299.99425 * 22 21 20 42 42 H 1.09004 * 109.47368 * 179.97438 * 22 21 20 43 43 H 1.09002 * 109.47075 * 180.02562 * 23 22 21 44 44 H 1.08996 * 109.47407 * 59.99517 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9870 -0.0001 12 7 2.4324 -6.1006 -0.0007 13 6 1.9832 -7.3712 -0.0008 14 8 0.7908 -7.5929 -0.0009 15 6 2.9625 -8.5166 -0.0021 16 1 3.7975 -8.2815 0.6579 17 7 2.2919 -9.7347 0.4717 18 6 3.4832 -8.7409 -1.4232 19 6 2.3112 -9.0710 -2.3495 20 6 2.8319 -9.2959 -3.7705 21 6 3.8260 -10.4590 -3.7714 22 6 4.9979 -10.1289 -2.8449 23 6 4.4772 -9.9041 -1.4239 24 1 -0.4851 0.8401 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6043 0.8904 28 1 2.8720 -3.6042 -0.8894 29 1 0.8540 -5.0445 -0.8903 30 1 0.8534 -5.0450 0.8896 31 1 3.3860 -5.9233 -0.0011 32 1 1.9956 -9.6346 1.4309 33 1 1.5135 -9.9740 -0.1240 34 1 3.9808 -7.8371 -1.7747 35 1 1.8136 -9.9749 -1.9980 36 1 1.6028 -8.2426 -2.3487 37 1 3.3298 -8.3923 -4.1223 38 1 1.9969 -9.5307 -4.4306 39 1 4.1965 -10.6195 -4.7837 40 1 3.3281 -11.3627 -3.4196 41 1 5.4958 -9.2254 -3.1967 42 1 5.7059 -10.9577 -2.8451 43 1 5.3121 -9.6685 -0.7640 44 1 3.9793 -10.8077 -1.0722 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220191886.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:33 Heat of formation + Delta-G solvation = -86.485678 kcal Electronic energy + Delta-G solvation = -20717.943330 eV Core-core repulsion = 17667.896534 eV Total energy + Delta-G solvation = -3050.046797 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.31941 -38.33189 -35.58170 -34.44808 -33.34285 -31.25489 -30.89714 -30.25686 -27.32254 -25.45769 -23.16264 -22.77356 -21.72481 -20.73615 -19.94847 -19.38678 -16.99405 -16.65098 -16.36756 -15.91314 -15.38380 -15.04952 -14.51142 -14.38954 -14.34722 -13.83293 -13.69516 -13.45930 -13.31398 -12.39923 -12.31603 -12.24204 -11.89699 -11.85026 -11.59523 -11.25947 -11.22927 -10.92637 -10.77692 -10.64013 -10.60962 -10.45849 -10.24510 -10.04901 -9.90390 -9.55963 -9.18085 -8.82790 -8.77408 -8.39870 -6.04322 -4.07695 2.67613 3.28989 3.35023 3.36766 3.40081 4.33021 4.42039 4.47045 4.49862 4.60741 4.87831 4.93196 5.08340 5.16134 5.24645 5.31455 5.35268 5.38764 5.44613 5.50675 5.68716 5.71215 5.73258 5.87707 5.96600 5.98970 6.06226 6.09996 6.11642 6.18448 6.35746 6.44216 6.55512 6.77307 6.83313 6.96663 7.20784 7.60248 7.65726 7.72487 7.94068 8.30490 8.35898 8.98957 9.56719 11.06960 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028009 B = 0.003177 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.433859 B = 8811.769043 C = 9195.413375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.115 3.885 12 N -0.722 5.722 13 C 0.476 3.524 14 O -0.550 6.550 15 C 0.077 3.923 16 H 0.100 0.900 17 N -0.818 5.818 18 C -0.072 4.072 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.121 4.121 23 C -0.103 4.103 24 H 0.261 0.739 25 H 0.018 0.982 26 H 0.018 0.982 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.398 0.602 32 H 0.343 0.657 33 H 0.349 0.651 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.481 -21.277 -3.808 23.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.008 4.008 12 N -0.372 5.372 13 C 0.260 3.740 14 O -0.428 6.428 15 C -0.039 4.039 16 H 0.118 0.882 17 N -0.347 5.347 18 C -0.091 4.091 19 C -0.156 4.156 20 C -0.156 4.156 21 C -0.156 4.156 22 C -0.159 4.159 23 C -0.141 4.141 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.232 0.768 32 H 0.155 0.845 33 H 0.164 0.836 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.148 -21.683 -3.937 23.861 hybrid contribution -0.035 1.876 0.157 1.883 sum 9.114 -19.807 -3.780 22.128 Atomic orbital electron populations 1.69966 1.06080 1.26722 1.50518 1.25033 0.94862 0.99335 0.95237 0.86575 0.79803 0.83385 0.78120 1.20631 1.21185 1.19869 1.21200 0.92993 0.90936 1.51007 0.92637 1.19025 0.93838 0.90894 0.97601 1.21882 0.99747 0.93371 1.00850 1.21645 0.91982 0.85379 1.01822 1.46333 1.10764 1.06173 1.73978 1.22013 0.90730 0.85159 0.76141 1.90693 1.16969 1.84881 1.50274 1.21636 0.96040 0.87530 0.98675 0.88228 1.59194 1.35691 1.31961 1.07878 1.21117 0.96599 0.99531 0.91847 1.21613 0.97188 1.02142 0.94671 1.21514 0.98741 0.98628 0.96697 1.21531 0.96458 0.98425 0.99213 1.21565 0.97483 1.01290 0.95538 1.21459 0.97776 0.98796 0.96054 0.92902 0.96332 0.96329 0.92746 0.92734 0.91905 0.91916 0.76817 0.84458 0.83566 0.90608 0.91408 0.91815 0.92044 0.92093 0.92383 0.92021 0.92203 0.92152 0.92207 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.83 13.29 55.43 0.74 -26.10 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.34 5.27 -26.74 -0.14 -2.48 16 11 C 0.11 2.01 5.67 -4.04 -0.02 1.99 16 12 N -0.72 -10.00 5.56 -60.30 -0.33 -10.33 16 13 C 0.48 6.58 5.92 -10.99 -0.07 6.51 16 14 O -0.55 -9.66 15.95 5.55 0.09 -9.57 16 15 C 0.08 0.78 2.97 -68.86 -0.20 0.57 16 16 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 17 N -0.82 -7.93 8.16 -5.65 -0.05 -7.98 16 18 C -0.07 -0.66 2.06 -90.62 -0.19 -0.85 16 19 C -0.12 -1.22 4.61 -26.73 -0.12 -1.34 16 20 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 21 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 22 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 23 C -0.10 -0.84 5.05 -26.73 -0.13 -0.97 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.40 4.45 8.47 -40.82 -0.35 4.11 16 32 H 0.34 3.24 9.06 -39.30 -0.36 2.88 16 33 H 0.35 3.66 6.75 -39.29 -0.27 3.40 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.69 6.67 -51.93 -0.35 0.34 16 36 H 0.06 0.82 7.00 -51.93 -0.36 0.45 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.68 7.60 -51.93 -0.39 0.29 16 LS Contribution 346.41 15.07 5.22 5.22 Total: -1.00 -31.08 346.41 -9.21 -40.29 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -7.95 Total: 4.92 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -1.90 Total: -12.88 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.36 Total: -44.41 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.08 -9.21 -40.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220191886.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.191 kcal (2) G-P(sol) polarization free energy of solvation -31.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds