Wall clock time and date at job start Mon Mar 30 2020 01:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99732 * 2 1 4 4 H 1.48500 * 109.46866 * 269.99815 * 3 2 1 5 5 H 1.48500 * 109.47526 * 29.99403 * 3 2 1 6 6 H 1.48501 * 109.47029 * 149.99557 * 3 2 1 7 7 C 1.37873 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00216 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99955 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47271 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47184 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.47417 * 179.97438 * 11 10 9 13 13 C 1.34768 * 120.00426 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00179 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.00084 * 179.97438 * 13 12 11 16 16 H 1.09002 * 109.47152 * 40.00061 * 15 13 12 17 17 N 1.46899 * 109.47107 * 159.99973 * 15 13 12 18 18 C 1.53002 * 109.46966 * 280.00201 * 15 13 12 19 19 C 1.52996 * 109.46972 * 299.99823 * 18 15 13 20 20 C 1.53002 * 109.46969 * 180.02562 * 19 18 15 21 21 C 1.53002 * 109.47454 * 59.99949 * 20 19 18 22 22 C 1.52996 * 109.46891 * 300.00332 * 21 20 19 23 23 C 1.53002 * 109.47346 * 59.99997 * 22 21 20 24 24 H 0.97004 * 120.00213 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47041 * 59.99868 * 9 7 2 26 26 H 1.09000 * 109.47325 * 299.99951 * 9 7 2 27 27 H 1.08996 * 109.47346 * 59.99633 * 10 9 7 28 28 H 1.09000 * 109.47065 * 300.00305 * 10 9 7 29 29 H 1.08998 * 109.47191 * 60.00024 * 11 10 9 30 30 H 1.09000 * 109.47261 * 300.00053 * 11 10 9 31 31 H 0.97000 * 119.99295 * 359.97438 * 12 11 10 32 32 H 1.00893 * 111.00096 * 296.05175 * 17 15 13 33 33 H 1.00903 * 110.99833 * 59.99796 * 17 15 13 34 34 H 1.08996 * 109.47407 * 60.00310 * 18 15 13 35 35 H 1.09004 * 109.47298 * 300.00176 * 19 18 15 36 36 H 1.09004 * 109.47552 * 60.00305 * 19 18 15 37 37 H 1.09004 * 109.46930 * 300.00004 * 20 19 18 38 38 H 1.09002 * 109.47067 * 180.02562 * 20 19 18 39 39 H 1.08992 * 109.47056 * 179.97438 * 21 20 19 40 40 H 1.09004 * 109.47006 * 60.00102 * 21 20 19 41 41 H 1.08996 * 109.47261 * 299.99425 * 22 21 20 42 42 H 1.09004 * 109.47368 * 179.97438 * 22 21 20 43 43 H 1.09002 * 109.47075 * 180.02562 * 23 22 21 44 44 H 1.08996 * 109.47407 * 59.99517 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9870 -0.0001 12 7 2.4324 -6.1006 -0.0007 13 6 1.9832 -7.3712 -0.0008 14 8 0.7908 -7.5929 -0.0009 15 6 2.9625 -8.5166 -0.0021 16 1 3.7975 -8.2815 0.6579 17 7 2.2919 -9.7347 0.4717 18 6 3.4832 -8.7409 -1.4232 19 6 2.3112 -9.0710 -2.3495 20 6 2.8319 -9.2959 -3.7705 21 6 3.8260 -10.4590 -3.7714 22 6 4.9979 -10.1289 -2.8449 23 6 4.4772 -9.9041 -1.4239 24 1 -0.4851 0.8401 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6043 0.8904 28 1 2.8720 -3.6042 -0.8894 29 1 0.8540 -5.0445 -0.8903 30 1 0.8534 -5.0450 0.8896 31 1 3.3860 -5.9233 -0.0011 32 1 1.9956 -9.6346 1.4309 33 1 1.5135 -9.9740 -0.1240 34 1 3.9808 -7.8371 -1.7747 35 1 1.8136 -9.9749 -1.9980 36 1 1.6028 -8.2426 -2.3487 37 1 3.3298 -8.3923 -4.1223 38 1 1.9969 -9.5307 -4.4306 39 1 4.1965 -10.6195 -4.7837 40 1 3.3281 -11.3627 -3.4196 41 1 5.4958 -9.2254 -3.1967 42 1 5.7059 -10.9577 -2.8451 43 1 5.3121 -9.6685 -0.7640 44 1 3.9793 -10.8077 -1.0722 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220191886.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:33 Heat of formation + Delta-G solvation = -107.562209 kcal Electronic energy + Delta-G solvation = -20718.857277 eV Core-core repulsion = 17667.896534 eV Total energy + Delta-G solvation = -3050.960744 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.35153 -39.22023 -37.06110 -35.32642 -35.22288 -33.03398 -31.58904 -31.00973 -28.96887 -26.70300 -24.74354 -23.54417 -22.65947 -22.35052 -20.96248 -20.26766 -18.59147 -18.02403 -17.41918 -17.07742 -16.56847 -16.43201 -16.20204 -15.25884 -15.20276 -14.99772 -14.83485 -14.27853 -14.22488 -14.10815 -13.77342 -13.57499 -13.11920 -12.95780 -12.76659 -12.58267 -12.45761 -12.39466 -11.94573 -11.92902 -11.71083 -11.66538 -11.39487 -11.27484 -11.21247 -10.98365 -10.82635 -10.57789 -10.12425 -9.74387 -8.21590 -6.33572 1.40686 1.42100 1.53151 1.56027 2.21360 2.41445 3.12183 3.48227 3.70019 3.74140 3.87196 3.97356 4.15064 4.16255 4.24687 4.37891 4.46837 4.50617 4.53299 4.64546 4.70280 4.74004 4.79499 4.89741 4.95511 5.04106 5.13015 5.20179 5.27707 5.33706 5.37060 5.40755 5.43666 5.48776 5.49845 5.66779 5.69439 5.81238 5.98508 6.19497 6.37193 6.56057 6.83994 7.20908 7.36419 8.90569 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028009 B = 0.003177 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.433859 B = 8811.769043 C = 9195.413375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.259 1.259 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.101 4.101 11 C 0.129 3.871 12 N -0.712 5.712 13 C 0.474 3.526 14 O -0.591 6.591 15 C 0.088 3.912 16 H 0.125 0.875 17 N -0.810 5.810 18 C -0.069 4.069 19 C -0.116 4.116 20 C -0.118 4.118 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.097 4.097 24 H 0.263 0.737 25 H -0.010 1.010 26 H -0.009 1.009 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.415 0.585 32 H 0.346 0.654 33 H 0.345 0.655 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.031 0.969 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.376 -21.857 -3.812 25.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.580 4.580 8 H 0.085 0.915 9 C -0.014 4.014 10 C -0.139 4.139 11 C 0.005 3.995 12 N -0.364 5.364 13 C 0.260 3.740 14 O -0.471 6.471 15 C -0.028 4.028 16 H 0.143 0.857 17 N -0.339 5.339 18 C -0.088 4.088 19 C -0.154 4.154 20 C -0.155 4.155 21 C -0.154 4.154 22 C -0.157 4.157 23 C -0.134 4.134 24 H 0.072 0.928 25 H 0.008 0.992 26 H 0.009 0.991 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.252 0.748 32 H 0.158 0.842 33 H 0.159 0.841 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.050 0.950 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.092 -22.287 -3.938 25.660 hybrid contribution -0.999 2.011 0.148 2.250 sum 11.093 -20.276 -3.790 23.421 Atomic orbital electron populations 1.70114 1.08004 1.27842 1.51656 1.26043 0.95751 1.03643 0.94712 0.85398 0.78703 0.78157 0.78496 1.19779 1.21041 1.18311 1.21682 0.93777 0.91974 1.50538 0.91457 1.18939 0.94434 0.93109 0.94899 1.21589 0.98391 0.91799 1.02122 1.21191 0.92116 0.86005 1.00216 1.46137 1.11042 1.05352 1.73881 1.22845 0.90878 0.85651 0.74611 1.90677 1.19097 1.85405 1.51934 1.21744 0.95481 0.85714 0.99900 0.85732 1.59239 1.35442 1.31195 1.07976 1.21138 0.96398 1.00449 0.90795 1.21560 0.97088 1.00745 0.95962 1.21510 0.99070 0.99220 0.95736 1.21517 0.96241 0.97643 0.99968 1.21567 0.97414 1.01868 0.94887 1.21409 0.97554 0.97686 0.96771 0.92789 0.99172 0.99108 0.91300 0.91374 0.93756 0.93560 0.74839 0.84160 0.84091 0.90192 0.91582 0.94975 0.92318 0.92355 0.91511 0.91981 0.92029 0.90938 0.90984 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.39 13.29 21.45 0.28 -57.10 16 2 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 3 Si 0.97 43.70 29.54 68.60 2.03 45.73 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.54 -30.26 9.11 25.60 0.23 -30.03 16 8 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 9 C 0.02 1.25 4.97 29.85 0.15 1.40 16 10 C -0.10 -3.89 5.27 30.59 0.16 -3.73 16 11 C 0.13 4.58 5.67 86.38 0.49 5.07 16 12 N -0.71 -19.00 5.56 -463.07 -2.57 -21.58 16 13 C 0.47 12.82 5.92 87.66 0.52 13.34 16 14 O -0.59 -21.10 15.95 -3.04 -0.05 -21.15 16 15 C 0.09 1.60 2.97 44.17 0.13 1.73 16 16 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 17 N -0.81 -14.56 8.16 -171.79 -1.40 -15.96 16 18 C -0.07 -1.14 2.06 -10.79 -0.02 -1.17 16 19 C -0.12 -2.33 4.61 30.59 0.14 -2.19 16 20 C -0.12 -2.03 5.92 30.60 0.18 -1.85 16 21 C -0.12 -1.60 5.92 30.59 0.18 -1.42 16 22 C -0.12 -1.48 5.92 30.59 0.18 -1.30 16 23 C -0.10 -1.30 5.05 30.60 0.15 -1.14 16 24 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 25 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 26 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 27 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.41 8.30 8.47 -92.71 -0.79 7.52 16 32 H 0.35 6.05 9.06 -89.70 -0.81 5.24 16 33 H 0.34 7.03 6.75 -89.69 -0.61 6.42 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.07 1.33 6.67 -2.38 -0.02 1.31 16 36 H 0.03 0.84 7.00 -2.39 -0.02 0.82 16 37 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 39 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 1.08 7.60 -2.39 -0.02 1.07 16 Total: -1.00 -68.18 346.41 0.03 -68.15 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: -1.22 Total: 22.96 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: 2.96 Total: -21.04 kcal Atomic # 7 Polarization: -90.95 SS G_CDS: -3.69 Total: -94.64 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.05 Total: -21.15 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -68.18 0.03 -68.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220191886.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.414 kcal (2) G-P(sol) polarization free energy of solvation -68.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds