Wall clock time and date at job start Mon Mar 30 2020 01:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34939 * 126.03802 * 2 1 4 4 C 1.35314 * 107.74885 * 180.02562 * 3 2 1 5 5 C 1.50694 * 126.04478 * 179.73964 * 4 3 2 6 6 O 1.42903 * 109.47402 * 89.99827 * 5 4 3 7 7 C 1.42898 * 114.00221 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.47156 * 30.00032 * 7 6 5 9 9 C 1.50701 * 109.47235 * 270.00021 * 7 6 5 10 10 H 1.07994 * 120.00286 * 119.99720 * 9 7 6 11 11 C 1.37880 * 119.99659 * 300.00054 * 9 7 6 12 12 N 1.31521 * 120.00063 * 359.97438 * 11 9 7 13 13 Si 1.86795 * 120.00066 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.46858 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47193 * 119.99877 * 13 11 9 16 16 H 1.48499 * 109.47453 * 239.99955 * 13 11 9 17 17 C 1.52997 * 109.47301 * 149.99608 * 7 6 5 18 18 N 1.46898 * 109.47194 * 293.29549 * 17 7 6 19 19 C 1.46903 * 109.47339 * 64.49884 * 18 17 7 20 20 C 1.46905 * 109.47115 * 184.49709 * 18 17 7 21 21 C 1.46898 * 109.47136 * 304.49472 * 18 17 7 22 22 C 1.39874 * 107.91557 * 359.97438 * 4 3 2 23 23 N 1.30840 * 108.20494 * 0.02562 * 22 4 3 24 24 H 1.08998 * 109.47445 * 89.99838 * 1 2 3 25 25 H 1.09004 * 109.47387 * 210.00149 * 1 2 3 26 26 H 1.09001 * 109.46749 * 330.00011 * 1 2 3 27 27 H 1.08008 * 126.13162 * 359.97438 * 3 2 1 28 28 H 1.09002 * 109.47326 * 209.99875 * 5 4 3 29 29 H 1.08998 * 109.47428 * 329.99700 * 5 4 3 30 30 H 0.96997 * 119.99875 * 180.02562 * 12 11 9 31 31 H 1.09007 * 109.46768 * 53.29628 * 17 7 6 32 32 H 1.09001 * 109.47280 * 173.29201 * 17 7 6 33 33 H 1.08996 * 109.46878 * 50.74420 * 19 18 17 34 34 H 1.08996 * 109.47092 * 170.74416 * 19 18 17 35 35 H 1.09001 * 109.46794 * 290.74378 * 19 18 17 36 36 H 1.09000 * 109.46777 * 60.00239 * 20 18 17 37 37 H 1.09000 * 109.46991 * 179.97438 * 20 18 17 38 38 H 1.08993 * 109.47201 * 300.00322 * 20 18 17 39 39 H 1.09007 * 109.46912 * 60.00152 * 21 18 17 40 40 H 1.09000 * 109.47276 * 179.97438 * 21 18 17 41 41 H 1.09000 * 109.47676 * 300.00325 * 21 18 17 42 42 H 1.08003 * 125.89765 * 180.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 4.7680 1.5451 -0.0063 6 8 5.1574 1.8284 1.3391 7 6 6.3146 2.6599 1.4465 8 1 6.3645 3.3262 0.5852 9 6 7.5503 1.7983 1.4873 10 1 8.3096 1.9067 0.7270 11 6 7.7114 0.8714 2.4952 12 7 6.7869 0.7396 3.4214 13 14 9.2427 -0.1972 2.5455 14 1 10.1220 0.1437 1.3983 15 1 9.9719 0.0421 3.8168 16 1 8.8515 -1.6272 2.4609 17 6 6.2290 3.4899 2.7289 18 7 5.1173 4.4441 2.6214 19 6 3.8480 3.7095 2.5362 20 6 5.1015 5.3131 3.8057 21 6 5.2906 5.2639 1.4148 22 6 3.5346 -0.7322 -0.0003 23 7 2.2890 -1.1328 -0.0002 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.9282 2.1194 -0.0004 28 1 5.5812 1.0319 -0.5195 29 1 4.5434 2.4779 -0.5236 30 1 6.9005 0.0878 4.1307 31 1 6.0596 2.8288 3.5789 32 1 7.1624 4.0342 2.8724 33 1 3.7947 2.9812 3.3453 34 1 3.0167 4.4093 2.6219 35 1 3.7908 3.1930 1.5780 36 1 6.0433 5.8582 3.8689 37 1 4.2769 6.0214 3.7257 38 1 4.9730 4.7048 4.7010 39 1 5.3023 4.6191 0.5360 40 1 4.4654 5.9716 1.3348 41 1 6.2324 5.8090 1.4780 42 1 4.4053 -1.3711 -0.0003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222429999.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:04 Heat of formation + Delta-G solvation = 144.685981 kcal Electronic energy + Delta-G solvation = -22041.074208 eV Core-core repulsion = 18949.281595 eV Total energy + Delta-G solvation = -3091.792613 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.177 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.19416 -41.92082 -38.20964 -34.67955 -33.93471 -31.99497 -30.91689 -30.30834 -30.14383 -28.32137 -27.55727 -25.54752 -24.77794 -22.48879 -21.87751 -21.07523 -18.91726 -18.56761 -18.23237 -17.83020 -17.62430 -16.73841 -16.19547 -15.81658 -15.59109 -15.29593 -14.98616 -14.70145 -14.69230 -14.20297 -14.07058 -13.89905 -13.80962 -13.68325 -13.60010 -13.55857 -13.26051 -13.02337 -12.62296 -12.25706 -12.10516 -11.99884 -11.42987 -11.10578 -10.95404 -10.18974 -10.03863 -9.64695 -9.24650 -7.59556 -5.79151 0.40943 1.06940 1.71765 1.99328 2.19005 2.34050 2.36572 2.39795 2.41570 2.46609 3.12201 3.17918 3.23960 3.39971 3.49048 3.61722 3.70067 3.72598 3.78188 3.79406 3.80692 3.87437 3.94932 4.21577 4.28835 4.30715 4.36466 4.39453 4.47907 4.50134 4.70572 4.85367 5.04183 5.07497 5.36502 5.46098 5.90087 6.18065 6.34641 6.41534 6.87723 6.94652 7.38250 8.04065 9.43239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.379 5.379 3 C 0.058 3.942 4 C -0.227 4.227 5 C 0.144 3.856 6 O -0.370 6.370 7 C 0.199 3.801 8 H 0.030 0.970 9 C -0.566 4.566 10 H 0.072 0.928 11 C 0.093 3.907 12 N -0.860 5.860 13 Si 0.897 3.103 14 H -0.268 1.268 15 H -0.278 1.278 16 H -0.275 1.275 17 C -0.003 4.003 18 N -0.270 5.270 19 C -0.038 4.038 20 C -0.041 4.041 21 C -0.045 4.045 22 C 0.074 3.926 23 N -0.299 5.299 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.167 0.833 28 H 0.061 0.939 29 H 0.032 0.968 30 H 0.274 0.726 31 H 0.156 0.844 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.092 0.908 35 H 0.135 0.865 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.106 0.894 41 H 0.113 0.887 42 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.234 16.251 0.097 18.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.161 5.161 3 C -0.089 4.089 4 C -0.238 4.238 5 C 0.066 3.934 6 O -0.290 6.290 7 C 0.143 3.857 8 H 0.048 0.952 9 C -0.603 4.603 10 H 0.090 0.910 11 C -0.116 4.116 12 N -0.494 5.494 13 Si 0.723 3.277 14 H -0.192 1.192 15 H -0.203 1.203 16 H -0.201 1.201 17 C -0.122 4.122 18 N 0.071 4.929 19 C -0.179 4.179 20 C -0.183 4.183 21 C -0.187 4.187 22 C -0.113 4.113 23 N -0.120 5.120 24 H 0.092 0.908 25 H 0.108 0.892 26 H 0.103 0.897 27 H 0.184 0.816 28 H 0.079 0.921 29 H 0.050 0.950 30 H 0.084 0.916 31 H 0.173 0.827 32 H 0.132 0.868 33 H 0.137 0.863 34 H 0.110 0.890 35 H 0.153 0.847 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.125 0.875 41 H 0.132 0.868 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -10.352 15.065 0.439 18.284 hybrid contribution 1.420 0.094 0.002 1.423 sum -8.932 15.160 0.442 17.601 Atomic orbital electron populations 1.21841 0.74309 1.04470 1.03346 1.48477 1.06606 1.03965 1.57032 1.22179 0.90899 0.93081 1.02752 1.19887 0.93578 0.94152 1.16203 1.20299 0.92578 0.94832 0.85668 1.88121 1.45760 1.70997 1.24119 1.19914 0.87196 0.89663 0.88957 0.95227 1.21273 1.04540 1.21343 1.13123 0.91013 1.24970 0.96423 0.95815 0.94436 1.69654 1.32448 1.34218 1.13051 0.86417 0.81887 0.80626 0.78769 1.19232 1.20330 1.20068 1.24973 0.86669 0.90952 1.09565 1.46393 1.17582 1.15519 1.13402 1.24288 0.82677 0.99339 1.11581 1.23984 1.07626 0.97355 0.89295 1.24035 1.07204 0.98320 0.89172 1.23877 0.94988 0.94793 0.97610 1.77456 1.01835 1.07912 1.24831 0.90781 0.89220 0.89662 0.81572 0.92069 0.95036 0.91628 0.82688 0.86752 0.86348 0.88954 0.84741 0.86974 0.87468 0.86643 0.86259 0.87500 0.86802 0.79929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 -0.21 11.47 59.85 0.69 0.47 16 2 N -0.38 -0.73 4.01 -68.16 -0.27 -1.00 16 3 C 0.06 0.00 11.40 -17.23 -0.20 -0.20 16 4 C -0.23 -0.52 5.73 -105.06 -0.60 -1.12 16 5 C 0.14 0.18 5.54 36.00 0.20 0.38 16 6 O -0.37 -0.73 6.44 -35.23 -0.23 -0.96 16 7 C 0.20 0.22 1.85 -27.88 -0.05 0.16 16 8 H 0.03 -0.04 5.49 -51.93 -0.28 -0.33 16 9 C -0.57 -4.12 8.89 -34.44 -0.31 -4.42 16 10 H 0.07 0.62 7.81 -52.49 -0.41 0.21 16 11 C 0.09 0.87 5.24 -17.82 -0.09 0.77 16 12 N -0.86 -8.08 10.95 55.43 0.61 -7.47 16 13 Si 0.90 8.57 29.54 -169.99 -5.02 3.55 16 14 H -0.27 -2.70 7.11 56.52 0.40 -2.30 16 15 H -0.28 -2.81 7.11 56.52 0.40 -2.41 16 16 H -0.28 -3.04 7.11 56.52 0.40 -2.64 16 17 C 0.00 0.01 3.53 -3.83 -0.01 0.00 16 18 N -0.27 2.54 0.05 -395.62 -0.02 2.53 16 19 C -0.04 0.32 7.17 60.07 0.43 0.75 16 20 C -0.04 0.48 8.00 60.07 0.48 0.96 16 21 C -0.05 0.51 7.54 60.06 0.45 0.96 16 22 C 0.07 0.36 11.96 -17.36 -0.21 0.15 16 23 N -0.30 -1.65 12.58 30.63 0.39 -1.26 16 24 H 0.07 -0.22 8.14 -51.93 -0.42 -0.64 16 25 H 0.09 -0.15 8.14 -51.93 -0.42 -0.58 16 26 H 0.08 -0.42 8.14 -51.93 -0.42 -0.85 16 27 H 0.17 -0.76 8.06 -52.48 -0.42 -1.18 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.03 -0.07 8.08 -51.93 -0.42 -0.49 16 30 H 0.27 2.79 8.31 -40.82 -0.34 2.46 16 31 H 0.16 0.02 6.12 -51.92 -0.32 -0.30 16 32 H 0.11 -0.45 8.09 -51.93 -0.42 -0.87 16 33 H 0.12 -0.72 7.94 -51.93 -0.41 -1.13 16 34 H 0.09 -1.08 8.01 -51.93 -0.42 -1.49 16 35 H 0.13 -0.88 5.04 -51.93 -0.26 -1.15 16 36 H 0.11 -1.39 8.12 -51.93 -0.42 -1.82 16 37 H 0.11 -1.49 8.07 -51.93 -0.42 -1.91 16 38 H 0.11 -1.27 8.14 -51.93 -0.42 -1.70 16 39 H 0.12 -1.15 5.86 -51.92 -0.30 -1.45 16 40 H 0.11 -1.45 8.14 -51.93 -0.42 -1.87 16 41 H 0.11 -1.34 8.14 -51.93 -0.42 -1.76 16 42 H 0.18 0.77 8.06 -52.48 -0.42 0.35 16 LS Contribution 333.25 15.07 5.02 5.02 Total: 0.00 -19.00 333.25 -5.77 -24.77 By element: Atomic # 1 Polarization: -17.01 SS G_CDS: -7.03 Total: -24.03 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 0.78 Total: -1.14 kcal Atomic # 7 Polarization: -7.91 SS G_CDS: 0.70 Total: -7.21 kcal Atomic # 8 Polarization: -0.73 SS G_CDS: -0.23 Total: -0.96 kcal Atomic # 14 Polarization: 8.57 SS G_CDS: -5.02 Total: 3.55 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -19.00 -5.77 -24.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222429999.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.456 kcal (2) G-P(sol) polarization free energy of solvation -18.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds